Wall clock time and date at job start Tue Mar 31 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47194 * 2 1 4 4 N 1.46898 * 109.47423 * 179.54106 * 3 2 1 5 5 C 1.46899 * 111.00217 * 288.00845 * 4 3 2 6 6 C 1.50694 * 109.47295 * 160.35577 * 5 4 3 7 7 H 1.08000 * 120.00243 * 4.65214 * 6 5 4 8 8 C 1.37884 * 120.00082 * 184.65940 * 6 5 4 9 9 N 1.31513 * 119.99587 * 0.02562 * 8 6 5 10 10 Si 1.86789 * 120.00086 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47512 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47282 * 119.99752 * 10 8 6 13 13 H 1.48503 * 109.47324 * 240.00079 * 10 8 6 14 14 C 1.46897 * 111.00144 * 164.05284 * 4 3 2 15 15 C 1.52998 * 109.47174 * 293.95591 * 14 4 3 16 16 C 1.53009 * 109.47033 * 180.02562 * 15 14 4 17 17 H 1.09000 * 109.47041 * 54.99961 * 16 15 14 18 18 C 1.53000 * 109.46822 * 294.99723 * 16 15 14 19 19 C 1.50703 * 109.46883 * 174.99862 * 16 15 14 20 20 C 1.34516 * 125.78720 * 239.71366 * 19 16 15 21 21 C 1.41384 * 106.83617 * 179.89371 * 20 19 16 22 22 C 1.34515 * 106.84326 * 0.36901 * 21 20 19 23 23 C 1.50697 * 125.78966 * 179.75109 * 22 21 20 24 24 O 1.34300 * 125.78782 * 60.02590 * 19 16 15 25 25 H 1.09005 * 109.46854 * 299.99269 * 1 2 3 26 26 H 1.09003 * 109.47628 * 59.99693 * 1 2 3 27 27 H 1.09000 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46754 * 240.00193 * 2 1 3 29 29 H 1.08997 * 109.47286 * 120.00525 * 2 1 3 30 30 H 1.09006 * 109.47428 * 59.54161 * 3 2 1 31 31 H 1.09001 * 109.47169 * 299.54403 * 3 2 1 32 32 H 1.09002 * 109.47285 * 280.35880 * 5 4 3 33 33 H 1.09004 * 109.46868 * 40.35356 * 5 4 3 34 34 H 0.97002 * 120.00037 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47154 * 173.95540 * 14 4 3 36 36 H 1.09002 * 109.47035 * 53.95689 * 14 4 3 37 37 H 1.08997 * 109.47513 * 60.00288 * 15 14 4 38 38 H 1.09002 * 109.47220 * 299.99984 * 15 14 4 39 39 H 1.08996 * 109.47021 * 299.99876 * 18 16 15 40 40 H 1.08996 * 109.46986 * 60.00399 * 18 16 15 41 41 H 1.09006 * 109.46574 * 180.02562 * 18 16 15 42 42 H 1.07995 * 126.57821 * 0.02972 * 20 19 16 43 43 H 1.08002 * 126.57945 * 180.12619 * 21 20 19 44 44 H 1.08998 * 109.47280 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.47356 * 300.00478 * 23 22 21 46 46 H 1.09002 * 109.47404 * 60.00121 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5089 1.4425 0.0111 5 6 4.0255 1.0220 1.3204 6 6 5.4559 0.5707 1.1747 7 1 5.9573 0.6641 0.2227 8 6 6.1245 0.0384 2.2567 9 7 5.5137 -0.0759 3.4157 10 14 7.8973 -0.5216 2.0759 11 1 8.3506 -0.2878 0.6812 12 1 8.7573 0.2476 3.0108 13 1 7.9938 -1.9694 2.3920 14 6 4.0382 2.7601 -0.3652 15 6 3.6852 3.0537 -1.8247 16 6 4.2370 4.4259 -2.2168 17 1 5.3074 4.4586 -2.0135 18 6 3.5297 5.5115 -1.4031 19 6 3.9972 4.6626 -3.6857 20 6 4.9469 4.8870 -4.6116 21 6 4.2820 5.0522 -5.8484 22 6 2.9654 4.9270 -5.6029 23 6 1.8641 5.0339 -6.6260 24 8 2.7988 4.6912 -4.2912 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6700 1.9587 0.8859 31 1 1.6833 1.9539 -0.8941 32 1 3.9780 1.8599 2.0159 33 1 3.4217 0.1986 1.7018 34 1 5.9842 -0.4500 4.1771 35 1 5.1216 2.7642 -0.2456 36 1 3.5990 3.5247 0.2757 37 1 2.6018 3.0497 -1.9444 38 1 4.1244 2.2892 -2.4656 39 1 2.4594 5.4786 -1.6065 40 1 3.7032 5.3402 -0.3408 41 1 3.9226 6.4890 -1.6828 42 1 6.0127 4.9302 -4.4430 43 1 4.7426 5.2460 -6.8059 44 1 0.9000 4.8897 -6.1384 45 1 1.8928 6.0203 -7.0891 46 1 2.0029 4.2695 -7.3905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208158330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:31 Heat of formation + Delta-G solvation = -27.343753 kcal Electronic energy + Delta-G solvation = -22029.867863 eV Core-core repulsion = 18919.585423 eV Total energy + Delta-G solvation = -3110.282440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.51938 -39.25195 -36.70254 -34.93910 -34.05608 -33.79009 -32.25566 -30.07616 -28.68414 -27.44674 -26.28193 -24.76395 -23.12070 -22.67017 -22.09192 -21.11083 -20.62315 -18.60243 -17.49705 -17.11028 -16.75172 -16.26493 -16.14694 -15.86825 -15.50316 -15.03141 -14.73755 -14.26901 -14.17627 -13.92592 -13.87050 -13.69133 -13.66717 -13.54706 -13.24734 -13.17316 -12.78217 -12.64072 -12.63200 -12.57570 -12.30720 -12.11297 -11.98242 -11.88703 -11.76400 -11.51169 -11.25780 -11.10212 -10.77306 -10.57307 -9.14069 -8.96191 -8.17917 -6.27419 0.80759 1.40684 1.41552 1.55112 1.70692 2.03636 2.41460 3.12258 3.25303 3.64202 3.85853 4.05034 4.07356 4.14434 4.16830 4.26591 4.29548 4.42418 4.51757 4.55425 4.62306 4.67814 4.74855 4.75238 4.77282 4.87656 4.90078 4.93061 4.97407 5.00905 5.08164 5.14002 5.15568 5.18716 5.27790 5.33848 5.35005 5.39337 5.41013 5.47334 5.69066 5.69585 6.11538 6.29360 6.44721 6.68158 6.88667 7.41861 8.92793 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.004135 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.947634 B = 6769.298636 C = 7949.863855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.055 3.945 4 N -0.546 5.546 5 C 0.208 3.792 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.068 3.932 15 C -0.093 4.093 16 C -0.006 4.006 17 H 0.106 0.894 18 C -0.143 4.143 19 C -0.013 4.013 20 C -0.223 4.223 21 C -0.224 4.224 22 C -0.033 4.033 23 C -0.071 4.071 24 O -0.189 6.189 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.014 0.986 31 H 0.084 0.916 32 H -0.042 1.042 33 H 0.011 0.989 34 H 0.263 0.737 35 H 0.061 0.939 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 11.054 -17.611 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.073 4.073 4 N -0.270 5.270 5 C 0.082 3.918 6 C -0.555 4.555 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.205 1.205 14 C -0.060 4.060 15 C -0.131 4.131 16 C -0.025 4.025 17 H 0.124 0.876 18 C -0.200 4.200 19 C -0.062 4.062 20 C -0.242 4.242 21 C -0.243 4.243 22 C -0.082 4.082 23 C -0.127 4.127 24 O -0.087 6.087 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.102 0.898 32 H -0.024 1.024 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.174 0.826 43 H 0.184 0.816 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.359 10.617 -17.644 21.868 hybrid contribution 0.954 0.071 1.130 1.481 sum -6.405 10.688 -16.514 20.687 Atomic orbital electron populations 1.21674 0.93629 1.02292 1.02081 1.21471 0.96651 0.96177 1.01221 1.22192 0.88023 0.97285 0.99788 1.62048 1.06936 1.27067 1.30978 1.19405 0.94945 0.92965 0.84513 1.21497 0.97677 1.40112 0.96246 0.92208 1.25887 1.02949 0.96025 0.94808 1.70092 1.38852 1.46865 1.01828 0.85373 0.79165 0.77864 0.78453 1.18819 1.20346 1.20506 1.21981 0.99933 0.88891 0.95199 1.21512 1.00877 0.95422 0.95255 1.19774 1.02079 0.95564 0.85041 0.87618 1.21848 1.00448 0.97785 0.99944 1.22520 0.82293 1.05640 0.95778 1.21880 1.00861 1.08606 0.92814 1.21837 0.93023 1.09463 0.99961 1.23210 0.97900 1.04748 0.82367 1.20456 0.93687 1.04864 0.93700 1.83939 1.32991 1.70432 1.21298 0.92994 0.91410 0.91752 0.92045 0.94572 0.96808 0.89800 1.02440 0.97118 0.92782 0.92068 0.95515 0.91661 0.92307 0.92538 0.91567 0.91404 0.82585 0.81596 0.90448 0.87961 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.12 -4.14 6.01 30.59 0.18 -3.96 16 3 C 0.06 2.05 4.83 86.30 0.42 2.46 16 4 N -0.55 -24.16 4.38 -900.81 -3.95 -28.11 16 5 C 0.21 11.31 4.59 85.56 0.39 11.70 16 6 C -0.52 -29.85 8.61 25.60 0.22 -29.63 16 7 H 0.06 3.42 7.66 -2.91 -0.02 3.39 16 8 C 0.00 0.05 5.46 84.66 0.46 0.51 16 9 N -0.94 -57.04 13.29 21.45 0.28 -56.76 16 10 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 14 C 0.07 2.60 4.54 86.30 0.39 2.99 16 15 C -0.09 -2.90 4.63 30.60 0.14 -2.76 16 16 C -0.01 -0.15 2.79 -11.54 -0.03 -0.18 16 17 H 0.11 2.67 8.10 -2.39 -0.02 2.65 16 18 C -0.14 -3.41 8.93 71.98 0.64 -2.77 16 19 C -0.01 -0.34 5.83 24.83 0.14 -0.19 16 20 C -0.22 -5.50 10.78 22.19 0.24 -5.26 16 21 C -0.22 -4.88 10.81 22.19 0.24 -4.64 16 22 C -0.03 -0.72 7.32 24.83 0.18 -0.53 16 23 C -0.07 -0.90 10.42 71.23 0.74 -0.16 16 24 O -0.19 -5.15 10.65 -2.48 -0.03 -5.18 16 25 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.04 1.49 6.53 -2.39 -0.02 1.48 16 30 H 0.01 0.53 8.05 -2.38 -0.02 0.51 16 31 H 0.08 2.71 5.94 -2.39 -0.01 2.70 16 32 H -0.04 -2.48 8.00 -2.39 -0.02 -2.49 16 33 H 0.01 0.63 6.24 -2.38 -0.01 0.62 16 34 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 35 H 0.06 2.56 7.32 -2.39 -0.02 2.54 16 36 H 0.03 0.99 6.55 -2.39 -0.02 0.98 16 37 H 0.06 1.99 6.28 -2.39 -0.02 1.97 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.63 6.57 -2.39 -0.02 1.61 16 41 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -67.50 367.70 4.34 -63.16 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.92 Total: 15.28 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 5.08 Total: -35.40 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.66 Total: -84.86 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.03 Total: -5.18 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.50 4.34 -63.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208158330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.815 kcal (2) G-P(sol) polarization free energy of solvation -67.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds