Wall clock time and date at job start Tue Mar 31 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46943 * 2 1 4 4 C 1.52998 * 109.46823 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46926 * 179.97438 * 4 3 2 6 6 C 1.36942 * 120.00104 * 272.57015 * 5 4 3 7 7 H 1.07992 * 120.00075 * 146.31573 * 6 5 4 8 8 C 1.38815 * 119.99473 * 326.31332 * 6 5 4 9 9 N 1.31617 * 120.00120 * 336.63957 * 8 6 5 10 10 Si 1.86798 * 119.99733 * 156.64702 * 8 6 5 11 11 H 1.48504 * 109.47352 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47674 * 119.99898 * 10 8 6 13 13 H 1.48498 * 109.46878 * 240.00094 * 10 8 6 14 14 C 1.46500 * 120.00231 * 92.56818 * 5 4 3 15 15 C 1.53001 * 109.47208 * 270.00166 * 14 5 4 16 16 C 1.53001 * 109.47501 * 180.02562 * 15 14 5 17 17 H 1.09005 * 109.46850 * 304.99845 * 16 15 14 18 18 C 1.52997 * 109.47113 * 64.99696 * 16 15 14 19 19 C 1.50697 * 109.47446 * 184.99906 * 16 15 14 20 20 C 1.34511 * 125.79131 * 119.99822 * 19 16 15 21 21 C 1.41376 * 106.84317 * 180.02562 * 20 19 16 22 22 C 1.34517 * 106.84000 * 359.97438 * 21 20 19 23 23 C 1.50697 * 125.78654 * 180.02562 * 22 21 20 24 24 O 1.34298 * 108.41955 * 359.74144 * 22 21 20 25 25 H 1.08995 * 109.47421 * 300.00148 * 1 2 3 26 26 H 1.09003 * 109.46792 * 60.00811 * 1 2 3 27 27 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47730 * 239.99402 * 2 1 3 29 29 H 1.09003 * 109.46792 * 119.99189 * 2 1 3 30 30 H 1.08995 * 109.47396 * 59.99197 * 3 2 1 31 31 H 1.09003 * 109.46714 * 299.99237 * 3 2 1 32 32 H 1.08995 * 109.47645 * 59.99528 * 4 3 2 33 33 H 1.09003 * 109.46999 * 299.99241 * 4 3 2 34 34 H 0.96997 * 119.99772 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47419 * 29.99821 * 14 5 4 36 36 H 1.08999 * 109.47305 * 150.00235 * 14 5 4 37 37 H 1.09001 * 109.46926 * 299.99653 * 15 14 5 38 38 H 1.08998 * 109.47242 * 59.99392 * 15 14 5 39 39 H 1.08995 * 109.47238 * 60.00285 * 18 16 15 40 40 H 1.09004 * 109.47330 * 180.02562 * 18 16 15 41 41 H 1.09003 * 109.47320 * 300.00443 * 18 16 15 42 42 H 1.08002 * 126.57645 * 359.96340 * 20 19 16 43 43 H 1.08000 * 126.58365 * 180.02562 * 21 20 19 44 44 H 1.09006 * 109.47238 * 90.00514 * 23 22 21 45 45 H 1.09005 * 109.47002 * 210.00106 * 23 22 21 46 46 H 1.09002 * 109.47428 * 329.99939 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2369 3.4863 -1.1850 7 1 4.0597 4.5501 -1.2409 8 6 4.6458 2.7904 -2.3144 9 7 5.2918 1.6507 -2.1872 10 14 4.2793 3.4716 -4.0147 11 1 3.5469 4.7570 -3.8858 12 1 5.5537 3.6984 -4.7425 13 1 3.4453 2.5007 -4.7677 14 6 4.3556 3.4962 1.2672 15 6 3.1004 4.2106 1.7721 16 6 3.4109 4.9135 3.0952 17 1 3.8147 4.1909 3.8044 18 6 4.4384 6.0214 2.8552 19 6 2.1466 5.5134 3.6542 20 6 1.5916 5.2130 4.8421 21 6 0.4252 6.0030 4.9608 22 6 0.3374 6.7395 3.8386 23 6 -0.7493 7.7335 3.5196 24 8 1.3860 6.4432 3.0535 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9338 0.9285 -0.8890 33 1 3.9330 0.9289 0.8910 34 1 5.5771 1.1643 -2.9764 35 1 4.6749 2.7588 2.0037 36 1 5.1515 4.2249 1.1138 37 1 2.7810 4.9480 1.0357 38 1 2.3044 3.4819 1.9254 39 1 4.0347 6.7439 2.1460 40 1 4.6600 6.5219 3.7979 41 1 5.3529 5.5875 2.4508 42 1 1.9649 4.5035 5.5658 43 1 -0.2629 6.0139 5.7932 44 1 -0.4610 8.7180 3.8883 45 1 -0.8955 7.7783 2.4403 46 1 -1.6777 7.4234 3.9994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208169184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:12 Heat of formation + Delta-G solvation = -13.343681 kcal Electronic energy + Delta-G solvation = -22361.178095 eV Core-core repulsion = 19251.502744 eV Total energy + Delta-G solvation = -3109.675351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.51097 -38.61799 -36.68720 -35.19791 -34.05549 -33.35242 -32.13906 -30.06390 -28.88539 -27.41676 -26.20199 -24.57606 -22.82188 -22.64765 -21.73634 -21.59803 -20.61781 -18.63057 -17.47985 -17.09710 -16.84268 -16.22102 -15.97150 -15.59432 -15.17078 -15.02053 -14.77774 -14.22106 -14.16102 -13.93289 -13.71409 -13.67266 -13.60229 -13.43090 -13.16414 -12.99172 -12.85352 -12.77917 -12.56702 -12.40660 -12.16577 -12.02511 -11.96321 -11.77879 -11.72309 -11.55808 -11.28360 -11.08625 -10.76447 -10.46783 -9.14863 -8.56165 -7.78015 -5.38259 0.82065 1.42169 1.46133 1.55580 1.72127 2.07720 2.51131 3.23532 3.60166 3.72300 3.93642 4.08106 4.17880 4.18382 4.19292 4.37292 4.43318 4.47141 4.52538 4.60362 4.66483 4.70737 4.74147 4.83699 4.87449 4.90283 4.94265 5.01803 5.03941 5.06868 5.12829 5.13195 5.16997 5.17825 5.34228 5.35860 5.44844 5.46908 5.57115 5.59949 5.70212 5.71684 5.94328 6.32064 6.48632 7.19763 7.92166 8.41252 9.15243 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.004723 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.691597 B = 5927.093298 C = 6617.015331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.119 4.119 4 C 0.140 3.860 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.050 0.950 8 C -0.036 4.036 9 N -0.915 5.915 10 Si 0.948 3.052 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.148 3.852 15 C -0.111 4.111 16 C -0.004 4.004 17 H 0.115 0.885 18 C -0.141 4.141 19 C -0.014 4.014 20 C -0.221 4.221 21 C -0.220 4.220 22 C -0.040 4.040 23 C -0.071 4.071 24 O -0.197 6.197 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.251 0.749 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.049 0.951 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.163 0.837 43 H 0.170 0.830 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 5.993 13.996 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.159 4.159 4 C 0.015 3.985 5 N -0.322 5.322 6 C -0.388 4.388 7 H 0.068 0.932 8 C -0.233 4.233 9 N -0.560 5.560 10 Si 0.777 3.223 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.216 1.216 14 C 0.022 3.978 15 C -0.151 4.151 16 C -0.023 4.023 17 H 0.133 0.867 18 C -0.198 4.198 19 C -0.064 4.064 20 C -0.240 4.240 21 C -0.239 4.239 22 C -0.089 4.089 23 C -0.127 4.127 24 O -0.094 6.094 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.180 0.820 43 H 0.187 0.813 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.975 6.032 13.596 17.909 hybrid contribution -0.009 0.123 -1.075 1.082 sum -9.984 6.155 12.521 17.156 Atomic orbital electron populations 1.21718 0.94853 1.02006 1.01427 1.21443 0.96535 0.96246 1.01376 1.22005 0.98263 0.96129 0.99473 1.20994 0.91304 0.85890 1.00359 1.44054 1.74773 1.12018 1.01397 1.19183 1.38568 0.93052 0.88033 0.93191 1.25626 0.97921 0.98382 1.01400 1.70099 1.38732 1.18387 1.28751 0.85515 0.77437 0.78048 0.81338 1.19783 1.21554 1.21570 1.20994 0.94370 0.95113 0.87336 1.22061 0.99757 0.98521 0.94766 1.19832 0.88393 0.96808 0.97297 0.86740 1.21818 0.98529 0.97604 1.01886 1.22734 0.96221 0.93496 0.93926 1.21872 0.98382 1.05330 0.98407 1.21861 1.00921 1.00775 1.00313 1.23230 0.91291 1.02828 0.91590 1.20447 0.93113 0.95604 1.03575 1.83960 1.31902 1.48377 1.45191 0.92588 0.93668 0.91324 0.93430 0.91581 0.93451 0.95319 0.91461 0.95454 0.94001 0.93582 0.93724 0.94658 0.93242 0.93869 0.91195 0.91129 0.81964 0.81291 0.88824 0.90945 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.12 -3.99 5.93 30.60 0.18 -3.81 16 3 C -0.12 -4.93 5.53 30.59 0.17 -4.76 16 4 C 0.14 6.72 5.36 86.38 0.46 7.19 16 5 N -0.60 -30.33 2.46 -702.02 -1.72 -32.05 16 6 C -0.26 -14.39 9.48 84.03 0.80 -13.59 16 7 H 0.05 2.83 7.93 -2.91 -0.02 2.81 16 8 C -0.04 -2.04 4.97 84.86 0.42 -1.62 16 9 N -0.91 -53.77 11.29 21.65 0.24 -53.52 16 10 Si 0.95 45.52 29.61 68.60 2.03 47.56 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 14 C 0.15 6.12 5.47 86.38 0.47 6.60 16 15 C -0.11 -4.08 4.99 30.59 0.15 -3.93 16 16 C 0.00 -0.13 2.79 -11.54 -0.03 -0.16 16 17 H 0.11 2.86 8.10 -2.38 -0.02 2.84 16 18 C -0.14 -3.89 8.93 71.98 0.64 -3.25 16 19 C -0.01 -0.42 5.83 24.83 0.14 -0.27 16 20 C -0.22 -5.73 10.78 22.19 0.24 -5.49 16 21 C -0.22 -5.18 10.81 22.19 0.24 -4.94 16 22 C -0.04 -1.01 7.32 24.83 0.18 -0.83 16 23 C -0.07 -1.16 10.42 71.24 0.74 -0.42 16 24 O -0.20 -6.31 10.65 -2.45 -0.03 -6.33 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.88 6.44 -2.39 -0.02 1.87 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 3.71 5.30 -2.39 -0.01 3.70 16 33 H 0.03 1.23 7.86 -2.39 -0.02 1.21 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.05 1.77 7.87 -2.39 -0.02 1.75 16 36 H 0.04 1.88 6.46 -2.39 -0.02 1.87 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.88 6.44 -2.39 -0.02 1.86 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.94 6.56 -2.39 -0.02 1.93 16 42 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 44 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 46 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -65.23 368.94 6.97 -58.26 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.92 Total: 18.64 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 5.53 Total: -32.55 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.48 Total: -85.58 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.03 Total: -6.33 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.56 kcal Total: -65.23 6.97 -58.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208169184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.917 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds