Wall clock time and date at job start Tue Mar 31 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47623 * 2 1 4 4 C 1.52997 * 109.47623 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00372 * 275.04113 * 5 4 3 7 7 H 1.08004 * 119.99602 * 37.87029 * 6 5 4 8 8 C 1.38804 * 120.00247 * 217.87470 * 6 5 4 9 9 N 1.31621 * 120.00149 * 21.36207 * 8 6 5 10 10 Si 1.86800 * 120.00050 * 201.36288 * 8 6 5 11 11 H 1.48497 * 109.47149 * 60.00123 * 10 8 6 12 12 H 1.48507 * 109.47267 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47208 * 299.99964 * 10 8 6 14 14 C 1.46500 * 119.99759 * 95.31809 * 5 4 3 15 15 C 1.53006 * 109.47135 * 269.72152 * 14 5 4 16 16 C 1.52999 * 109.47329 * 180.02562 * 15 14 5 17 17 H 1.08991 * 109.46976 * 55.00149 * 16 15 14 18 18 C 1.53003 * 109.46746 * 295.00038 * 16 15 14 19 19 C 1.50702 * 109.46985 * 175.00174 * 16 15 14 20 20 C 1.34511 * 125.78740 * 239.71122 * 19 16 15 21 21 C 1.41385 * 106.84027 * 179.89044 * 20 19 16 22 22 C 1.34515 * 106.83837 * 0.37668 * 21 20 19 23 23 C 1.50700 * 125.78782 * 179.74671 * 22 21 20 24 24 O 1.34303 * 108.42275 * 359.76746 * 22 21 20 25 25 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47089 * 300.00268 * 1 2 3 27 27 H 1.09004 * 109.46600 * 60.00196 * 1 2 3 28 28 H 1.08999 * 109.47550 * 239.99719 * 2 1 3 29 29 H 1.09007 * 109.47100 * 119.99888 * 2 1 3 30 30 H 1.08999 * 109.46887 * 59.99313 * 3 2 1 31 31 H 1.09007 * 109.46791 * 300.00077 * 3 2 1 32 32 H 1.09003 * 109.46845 * 59.99856 * 4 3 2 33 33 H 1.09000 * 109.47142 * 300.00290 * 4 3 2 34 34 H 0.96995 * 120.00138 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47545 * 29.72027 * 14 5 4 36 36 H 1.09003 * 109.47305 * 149.72583 * 14 5 4 37 37 H 1.08999 * 109.47241 * 300.00588 * 15 14 5 38 38 H 1.09003 * 109.46672 * 60.00044 * 15 14 5 39 39 H 1.08994 * 109.46981 * 60.00619 * 18 16 15 40 40 H 1.09009 * 109.46651 * 179.97438 * 18 16 15 41 41 H 1.08991 * 109.47473 * 299.99806 * 18 16 15 42 42 H 1.07998 * 126.58386 * 0.03306 * 20 19 16 43 43 H 1.07993 * 126.58399 * 180.12298 * 21 20 19 44 44 H 1.09002 * 109.47246 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47536 * 299.99951 * 23 22 21 46 46 H 1.09006 * 109.47031 * 60.00394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1889 3.5032 -1.1816 7 1 3.4575 3.3697 -1.9650 8 6 5.2612 4.3637 -1.3726 9 7 6.3500 4.2300 -0.6453 10 14 5.1591 5.7115 -2.6619 11 1 4.0255 6.6163 -2.3434 12 1 6.4254 6.4873 -2.6685 13 1 4.9455 5.1022 -3.9991 14 6 4.4129 3.4757 1.2631 15 6 3.1838 4.1875 1.8322 16 6 3.5542 4.8691 3.1509 17 1 4.4048 5.5315 2.9911 18 6 3.9230 3.8064 4.1881 19 6 2.3795 5.6710 3.6491 20 6 2.3705 6.9974 3.8722 21 6 1.0732 7.3274 4.3273 22 6 0.3696 6.1816 4.3631 23 6 -1.0681 6.0433 4.7930 24 8 1.1659 5.1815 3.9512 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 7.0995 4.8310 -0.7790 35 1 4.7603 2.7262 1.9741 36 1 5.2049 4.2036 1.0865 37 1 2.8364 4.9371 1.1212 38 1 2.3919 3.4596 2.0087 39 1 4.7726 3.2265 3.8278 40 1 4.1873 4.2921 5.1276 41 1 3.0724 3.1440 4.3479 42 1 3.1952 7.6799 3.7288 43 1 0.7169 8.3102 4.5986 44 1 -1.3705 4.9987 4.7194 45 1 -1.1730 6.3797 5.8244 46 1 -1.7008 6.6514 4.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208169185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:17 Heat of formation + Delta-G solvation = -1.474719 kcal Electronic energy + Delta-G solvation = -22484.957654 eV Core-core repulsion = 19375.796979 eV Total energy + Delta-G solvation = -3109.160674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34144 -36.88590 -35.17278 -33.77123 -32.93338 -31.43873 -31.01939 -28.59192 -27.12568 -26.32886 -24.41419 -23.12863 -21.53330 -21.32505 -20.26819 -20.00187 -19.30229 -16.79787 -15.98139 -15.90321 -14.88444 -14.83269 -14.38180 -14.31929 -13.63098 -13.51572 -13.35773 -13.10377 -13.07153 -12.72507 -12.55384 -12.48301 -12.19480 -11.93376 -11.89528 -11.71913 -11.17231 -11.09871 -10.89943 -10.75795 -10.62535 -10.55162 -10.45373 -10.20267 -10.16965 -9.92264 -9.64117 -9.53176 -9.34456 -8.39865 -7.98273 -6.48502 -5.73147 -3.31968 1.97826 2.85581 3.16544 3.39292 3.44799 3.48097 4.51287 4.80890 5.04502 5.22772 5.25441 5.30629 5.39121 5.39710 5.41259 5.48795 5.53902 5.62170 5.63335 5.74990 5.87543 5.99841 6.05236 6.12718 6.15216 6.18431 6.29551 6.33800 6.37447 6.42503 6.44964 6.48357 6.56096 6.64125 6.68906 6.78601 6.83105 6.91526 7.06243 7.22745 7.29270 7.47535 7.75205 7.87299 8.58161 9.25951 9.88345 10.47258 11.25711 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.005950 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.265649 B = 4704.809322 C = 6199.291145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.148 3.852 5 N -0.585 5.585 6 C -0.256 4.256 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.888 5.888 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.149 3.851 15 C -0.128 4.128 16 C -0.013 4.013 17 H 0.098 0.902 18 C -0.144 4.144 19 C 0.020 3.980 20 C -0.225 4.225 21 C -0.210 4.210 22 C -0.034 4.034 23 C -0.069 4.069 24 O -0.170 6.170 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 0.317 10.349 14.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.021 3.979 5 N -0.304 5.304 6 C -0.386 4.386 7 H 0.075 0.925 8 C -0.187 4.187 9 N -0.531 5.531 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.022 3.978 15 C -0.168 4.168 16 C -0.032 4.032 17 H 0.116 0.884 18 C -0.201 4.201 19 C -0.030 4.030 20 C -0.244 4.244 21 C -0.229 4.229 22 C -0.084 4.084 23 C -0.126 4.126 24 O -0.067 6.067 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.095 0.087 10.305 14.426 hybrid contribution -0.076 1.177 -0.669 1.356 sum -10.171 1.265 9.636 14.068 Atomic orbital electron populations 1.21762 0.96850 1.00515 1.01496 1.21503 0.94939 0.98468 1.01167 1.22253 0.99709 0.94319 1.01448 1.20872 0.91100 0.87316 0.98566 1.43736 1.75820 1.08315 1.02534 1.18940 1.04318 1.21336 0.94025 0.92510 1.25141 0.94241 1.01262 0.98039 1.69990 1.03128 1.37550 1.42424 0.86528 0.76877 0.82552 0.81802 1.20938 1.21618 1.20745 1.20963 0.94723 0.96498 0.85601 1.22348 1.01691 0.99615 0.93133 1.19949 0.90773 0.96147 0.96305 0.88429 1.21851 1.02138 0.98426 0.97683 1.22772 0.85319 0.93539 1.01410 1.21545 0.98769 0.95217 1.08901 1.21459 0.94610 0.98629 1.08213 1.22319 0.94476 0.86392 1.05216 1.20221 0.87173 1.03720 1.01462 1.83961 1.20792 1.36881 1.65020 0.93604 0.93171 0.93061 0.92548 0.92760 0.92930 0.92571 0.94025 0.94960 0.93591 0.95619 0.88989 0.92173 0.93162 0.90997 0.93236 0.92680 0.83815 0.84068 0.90828 0.90186 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.54 5.51 -26.73 -0.15 -2.69 16 4 C 0.15 3.15 5.72 -4.04 -0.02 3.13 16 5 N -0.58 -14.44 2.43 -173.24 -0.42 -14.86 16 6 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 7 H 0.06 1.56 7.92 -52.48 -0.42 1.15 16 8 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 9 N -0.89 -25.30 11.47 55.49 0.64 -24.67 16 10 Si 0.89 21.67 29.60 -169.99 -5.03 16.64 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.15 3.39 5.09 -4.04 -0.02 3.37 16 15 C -0.13 -2.58 4.99 -26.73 -0.13 -2.71 16 16 C -0.01 -0.22 2.79 -91.77 -0.26 -0.47 16 17 H 0.10 1.65 8.10 -51.93 -0.42 1.23 16 18 C -0.14 -2.17 8.93 37.16 0.33 -1.84 16 19 C 0.02 0.34 5.83 -35.62 -0.21 0.13 16 20 C -0.23 -3.57 10.78 -39.70 -0.43 -3.99 16 21 C -0.21 -2.99 10.81 -39.70 -0.43 -3.42 16 22 C -0.03 -0.49 7.32 -35.62 -0.26 -0.75 16 23 C -0.07 -0.67 10.42 36.01 0.38 -0.29 16 24 O -0.17 -2.89 10.65 5.71 0.06 -2.83 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.00 6.66 -51.93 -0.35 0.65 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.03 0.55 6.28 -51.93 -0.33 0.23 16 36 H 0.09 2.37 5.52 -51.93 -0.29 2.09 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.05 1.01 6.66 -51.93 -0.35 0.66 16 39 H 0.07 1.09 6.57 -51.93 -0.34 0.75 16 40 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 43 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -29.54 369.65 -8.77 -38.30 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.36 Total: 1.83 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.22 Total: -19.99 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.21 Total: -39.52 kcal Atomic # 8 Polarization: -2.89 SS G_CDS: 0.06 Total: -2.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.54 -8.77 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208169185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.828 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds