Wall clock time and date at job start Tue Mar 31 2020 02:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47623 * 2 1 4 4 C 1.52997 * 109.47623 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.36936 * 120.00372 * 275.04113 * 5 4 3 7 7 H 1.08004 * 119.99602 * 37.87029 * 6 5 4 8 8 C 1.38804 * 120.00247 * 217.87470 * 6 5 4 9 9 N 1.31621 * 120.00149 * 21.36207 * 8 6 5 10 10 Si 1.86800 * 120.00050 * 201.36288 * 8 6 5 11 11 H 1.48497 * 109.47149 * 60.00123 * 10 8 6 12 12 H 1.48507 * 109.47267 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47208 * 299.99964 * 10 8 6 14 14 C 1.46500 * 119.99759 * 95.31809 * 5 4 3 15 15 C 1.53006 * 109.47135 * 269.72152 * 14 5 4 16 16 C 1.52999 * 109.47329 * 180.02562 * 15 14 5 17 17 H 1.08991 * 109.46976 * 55.00149 * 16 15 14 18 18 C 1.53003 * 109.46746 * 295.00038 * 16 15 14 19 19 C 1.50702 * 109.46985 * 175.00174 * 16 15 14 20 20 C 1.34511 * 125.78740 * 239.71122 * 19 16 15 21 21 C 1.41385 * 106.84027 * 179.89044 * 20 19 16 22 22 C 1.34515 * 106.83837 * 0.37668 * 21 20 19 23 23 C 1.50700 * 125.78782 * 179.74671 * 22 21 20 24 24 O 1.34303 * 108.42275 * 359.76746 * 22 21 20 25 25 H 1.08996 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47089 * 300.00268 * 1 2 3 27 27 H 1.09004 * 109.46600 * 60.00196 * 1 2 3 28 28 H 1.08999 * 109.47550 * 239.99719 * 2 1 3 29 29 H 1.09007 * 109.47100 * 119.99888 * 2 1 3 30 30 H 1.08999 * 109.46887 * 59.99313 * 3 2 1 31 31 H 1.09007 * 109.46791 * 300.00077 * 3 2 1 32 32 H 1.09003 * 109.46845 * 59.99856 * 4 3 2 33 33 H 1.09000 * 109.47142 * 300.00290 * 4 3 2 34 34 H 0.96995 * 120.00138 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47545 * 29.72027 * 14 5 4 36 36 H 1.09003 * 109.47305 * 149.72583 * 14 5 4 37 37 H 1.08999 * 109.47241 * 300.00588 * 15 14 5 38 38 H 1.09003 * 109.46672 * 60.00044 * 15 14 5 39 39 H 1.08994 * 109.46981 * 60.00619 * 18 16 15 40 40 H 1.09009 * 109.46651 * 179.97438 * 18 16 15 41 41 H 1.08991 * 109.47473 * 299.99806 * 18 16 15 42 42 H 1.07998 * 126.58386 * 0.03306 * 20 19 16 43 43 H 1.07993 * 126.58399 * 180.12298 * 21 20 19 44 44 H 1.09002 * 109.47246 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47536 * 299.99951 * 23 22 21 46 46 H 1.09006 * 109.47031 * 60.00394 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.1889 3.5032 -1.1816 7 1 3.4575 3.3697 -1.9650 8 6 5.2612 4.3637 -1.3726 9 7 6.3500 4.2300 -0.6453 10 14 5.1591 5.7115 -2.6619 11 1 4.0255 6.6163 -2.3434 12 1 6.4254 6.4873 -2.6685 13 1 4.9455 5.1022 -3.9991 14 6 4.4129 3.4757 1.2631 15 6 3.1838 4.1875 1.8322 16 6 3.5542 4.8691 3.1509 17 1 4.4048 5.5315 2.9911 18 6 3.9230 3.8064 4.1881 19 6 2.3795 5.6710 3.6491 20 6 2.3705 6.9974 3.8722 21 6 1.0732 7.3274 4.3273 22 6 0.3696 6.1816 4.3631 23 6 -1.0681 6.0433 4.7930 24 8 1.1659 5.1815 3.9512 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 7.0995 4.8310 -0.7790 35 1 4.7603 2.7262 1.9741 36 1 5.2049 4.2036 1.0865 37 1 2.8364 4.9371 1.1212 38 1 2.3919 3.4596 2.0087 39 1 4.7726 3.2265 3.8278 40 1 4.1873 4.2921 5.1276 41 1 3.0724 3.1440 4.3479 42 1 3.1952 7.6799 3.7288 43 1 0.7169 8.3102 4.5986 44 1 -1.3705 4.9987 4.7194 45 1 -1.1730 6.3797 5.8244 46 1 -1.7008 6.6514 4.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208169185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:16 Heat of formation + Delta-G solvation = -14.549028 kcal Electronic energy + Delta-G solvation = -22485.524598 eV Core-core repulsion = 19375.796979 eV Total energy + Delta-G solvation = -3109.727619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.52373 -38.60726 -36.60106 -35.36468 -34.06611 -33.18355 -32.26155 -30.07255 -28.81159 -27.43653 -26.22193 -24.56239 -22.79673 -22.67063 -21.76510 -21.61277 -20.62621 -18.69835 -17.27544 -17.10519 -16.85379 -16.30049 -16.00813 -15.60275 -15.32042 -14.89686 -14.77142 -14.15082 -14.11166 -13.94598 -13.78852 -13.70904 -13.64454 -13.43042 -13.19509 -12.98652 -12.80242 -12.76149 -12.55102 -12.32015 -12.18621 -12.09375 -11.97514 -11.80420 -11.71363 -11.62253 -11.31677 -11.06675 -10.78576 -10.45476 -9.15002 -8.50980 -7.79669 -5.43736 0.80698 1.43520 1.46333 1.52636 1.69225 2.04256 2.50220 3.23144 3.59455 3.73812 3.94453 4.10189 4.13968 4.16225 4.19314 4.34965 4.42521 4.48081 4.54237 4.57953 4.65492 4.73513 4.82571 4.85070 4.86937 4.90978 4.95817 5.00960 5.02587 5.06422 5.09819 5.12872 5.17797 5.18873 5.27943 5.39866 5.42337 5.50079 5.51653 5.64077 5.68157 5.69841 5.86791 6.29146 6.49373 7.20427 7.90338 8.42695 9.14217 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.005950 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.265649 B = 4704.809322 C = 6199.291145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.123 4.123 4 C 0.146 3.854 5 N -0.602 5.602 6 C -0.266 4.266 7 H 0.048 0.952 8 C -0.030 4.030 9 N -0.914 5.914 10 Si 0.949 3.051 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.275 1.275 14 C 0.153 3.847 15 C -0.106 4.106 16 C -0.007 4.007 17 H 0.094 0.906 18 C -0.136 4.136 19 C -0.010 4.010 20 C -0.230 4.230 21 C -0.222 4.222 22 C -0.036 4.036 23 C -0.069 4.069 24 O -0.189 6.189 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.252 0.748 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.028 0.972 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.153 0.847 43 H 0.169 0.831 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 0.392 11.465 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.162 4.162 4 C 0.020 3.980 5 N -0.323 5.323 6 C -0.397 4.397 7 H 0.065 0.935 8 C -0.228 4.228 9 N -0.558 5.558 10 Si 0.777 3.223 11 H -0.211 1.211 12 H -0.214 1.214 13 H -0.201 1.201 14 C 0.027 3.973 15 C -0.146 4.146 16 C -0.026 4.026 17 H 0.112 0.888 18 C -0.193 4.193 19 C -0.060 4.060 20 C -0.249 4.249 21 C -0.240 4.240 22 C -0.086 4.086 23 C -0.125 4.125 24 O -0.087 6.087 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.171 0.829 43 H 0.186 0.814 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.861 0.148 11.425 16.470 hybrid contribution 0.419 1.141 -0.981 1.561 sum -11.443 1.289 10.444 15.546 Atomic orbital electron populations 1.21726 0.95116 1.02028 1.01405 1.21458 0.96429 0.95729 1.01937 1.22037 0.97399 0.96710 1.00101 1.20986 0.92874 0.85691 0.98453 1.43991 1.76231 1.09655 1.02412 1.19090 1.03934 1.21901 0.94748 0.93479 1.25749 0.93995 1.02990 1.00064 1.70099 1.03565 1.38221 1.43894 0.85636 0.76590 0.80085 0.79945 1.21056 1.21420 1.20086 1.20861 0.94954 0.96124 0.85315 1.22013 1.00090 0.98475 0.94016 1.19788 0.91139 0.96532 0.95159 0.88818 1.21779 1.01900 0.97817 0.97785 1.22657 0.85638 0.94020 1.03641 1.21865 0.99972 0.94967 1.08116 1.21812 0.93851 1.00014 1.08360 1.23269 0.95897 0.85877 1.03509 1.20455 0.84325 1.04539 1.03186 1.83941 1.21023 1.38158 1.65572 0.91285 0.93060 0.93416 0.92228 0.91551 0.93506 0.94601 0.95312 0.93755 0.93838 0.94602 0.91903 0.95344 0.93269 0.91327 0.91422 0.92627 0.82945 0.81363 0.90491 0.87679 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.35 5.93 30.59 0.18 -3.17 16 3 C -0.12 -4.53 5.51 30.59 0.17 -4.36 16 4 C 0.15 6.27 5.72 86.38 0.49 6.76 16 5 N -0.60 -30.51 2.43 -702.01 -1.71 -32.22 16 6 C -0.27 -14.90 9.45 84.03 0.79 -14.11 16 7 H 0.05 2.68 7.92 -2.91 -0.02 2.65 16 8 C -0.03 -1.70 4.95 84.86 0.42 -1.28 16 9 N -0.91 -53.27 11.47 21.65 0.25 -53.02 16 10 Si 0.95 45.31 29.60 68.60 2.03 47.34 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.15 7.19 5.09 86.38 0.44 7.63 16 15 C -0.11 -4.39 4.99 30.60 0.15 -4.24 16 16 C -0.01 -0.25 2.79 -11.54 -0.03 -0.28 16 17 H 0.09 3.26 8.10 -2.39 -0.02 3.24 16 18 C -0.14 -4.01 8.93 71.98 0.64 -3.37 16 19 C -0.01 -0.33 5.83 24.83 0.14 -0.18 16 20 C -0.23 -7.12 10.78 22.19 0.24 -6.88 16 21 C -0.22 -5.90 10.81 22.19 0.24 -5.66 16 22 C -0.04 -0.96 7.32 24.83 0.18 -0.78 16 23 C -0.07 -1.13 10.42 71.24 0.74 -0.39 16 24 O -0.19 -6.30 10.65 -2.49 -0.03 -6.33 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.05 1.77 6.66 -2.39 -0.02 1.75 16 31 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 33 H 0.04 1.78 7.83 -2.39 -0.02 1.76 16 34 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.04 1.57 6.28 -2.39 -0.02 1.56 16 36 H 0.06 3.37 5.52 -2.39 -0.01 3.35 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 39 H 0.07 2.05 6.57 -2.39 -0.02 2.03 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -64.53 369.65 6.98 -57.55 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.91 Total: 19.81 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 5.52 Total: -33.13 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.46 Total: -85.24 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.03 Total: -6.33 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.53 6.98 -57.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208169185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.002 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds