Wall clock time and date at job start Tue Mar 31 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47331 * 2 1 4 4 C 1.53002 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.47071 * 174.47281 * 4 3 2 6 6 C 1.46893 * 111.00191 * 76.43719 * 5 4 3 7 7 C 1.50702 * 109.46971 * 281.00261 * 6 5 4 8 8 H 1.07997 * 120.00669 * 1.20804 * 7 6 5 9 9 C 1.37881 * 119.99934 * 181.22074 * 7 6 5 10 10 N 1.31511 * 120.00130 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00054 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47046 * 90.00009 * 11 9 7 13 13 H 1.48503 * 109.47007 * 330.00667 * 11 9 7 14 14 H 1.48497 * 109.47429 * 210.00349 * 11 9 7 15 15 C 1.46897 * 110.99890 * 200.39545 * 5 4 3 16 16 C 1.55896 * 110.16922 * 285.21232 * 15 5 4 17 17 C 1.50443 * 104.22229 * 248.19752 * 16 15 5 18 18 H 1.08997 * 109.44177 * 80.75808 * 17 16 15 19 19 C 1.51080 * 125.06734 * 214.43147 * 17 16 15 20 20 C 1.53969 * 101.91283 * 156.72875 * 19 17 16 21 21 O 1.20758 * 126.71393 * 155.08780 * 20 19 17 22 22 C 1.53506 * 106.56802 * 335.05143 * 20 19 17 23 23 C 1.50472 * 104.48480 * 352.88142 * 22 20 19 24 24 H 1.08994 * 109.54913 * 278.99612 * 23 22 20 25 25 C 1.51127 * 124.96823 * 145.25187 * 23 22 20 26 26 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47261 * 299.99476 * 1 2 3 28 28 H 1.09003 * 109.47580 * 59.99226 * 1 2 3 29 29 H 1.09001 * 109.47057 * 240.00012 * 2 1 3 30 30 H 1.08998 * 109.47154 * 120.00631 * 2 1 3 31 31 H 1.09006 * 109.46586 * 60.00806 * 3 2 1 32 32 H 1.08998 * 109.47517 * 300.00409 * 3 2 1 33 33 H 1.08996 * 109.46909 * 54.47494 * 4 3 2 34 34 H 1.08999 * 109.47283 * 294.46922 * 4 3 2 35 35 H 1.08993 * 109.47538 * 160.99744 * 6 5 4 36 36 H 1.09007 * 109.47060 * 40.99623 * 6 5 4 37 37 H 0.97000 * 120.00551 * 179.97438 * 10 9 7 38 38 H 1.08999 * 110.15608 * 47.03834 * 15 5 4 39 39 H 1.09000 * 110.47980 * 6.88776 * 16 15 5 40 40 H 1.09007 * 110.47716 * 129.51356 * 16 15 5 41 41 H 1.09010 * 110.93987 * 274.88280 * 19 17 16 42 42 H 1.08997 * 110.94645 * 38.56705 * 19 17 16 43 43 H 1.08998 * 110.43193 * 234.12886 * 22 20 19 44 44 H 1.09001 * 110.42949 * 111.62973 * 22 20 19 45 45 H 1.08996 * 110.98724 * 85.17311 * 25 23 22 46 46 H 1.09003 * 110.98223 * 321.37025 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0597 2.8210 -0.1328 6 6 3.9315 3.5503 1.1359 7 6 2.5036 3.9972 1.3163 8 1 1.7611 3.7460 0.5733 9 6 2.1450 4.7269 2.4298 10 7 0.8991 5.1173 2.5870 11 14 3.4290 5.1611 3.7152 12 1 4.0546 6.4630 3.3699 13 1 4.4720 4.1046 3.7496 14 1 2.7815 5.2610 5.0478 15 6 5.4473 2.8424 -0.6144 16 6 6.4206 2.4308 0.5318 17 6 7.1816 3.6912 0.8409 18 1 6.5786 4.3301 1.4860 19 6 8.6302 3.7483 1.2661 20 6 9.0247 5.1799 0.8593 21 8 9.9093 5.8485 1.3376 22 6 8.0740 5.5907 -0.2738 23 6 7.3041 4.3376 -0.5919 24 1 7.9023 3.6964 -1.2392 25 6 5.8551 4.2963 -1.0194 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.8452 -0.8355 34 1 3.9329 1.0169 0.9362 35 1 4.5859 4.4218 1.1217 36 1 4.2146 2.8967 1.9610 37 1 0.6467 5.6303 3.3706 38 1 5.5602 2.1697 -1.4646 39 1 5.8611 2.0988 1.4063 40 1 7.0998 1.6485 0.1928 41 1 8.7259 3.6089 2.3430 42 1 9.2244 3.0118 0.7252 43 1 8.6402 5.9208 -1.1446 44 1 7.3984 6.3772 0.0627 45 1 5.7613 4.4427 -2.0954 46 1 5.2660 5.0334 -0.4738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254952989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:32 Heat of formation + Delta-G solvation = -40.730592 kcal Electronic energy + Delta-G solvation = -23108.738472 eV Core-core repulsion = 19997.875535 eV Total energy + Delta-G solvation = -3110.862937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71856 -38.61671 -36.59661 -34.13515 -32.62388 -31.29159 -30.40263 -28.51303 -27.26229 -26.21504 -24.02792 -22.73732 -21.21230 -20.34895 -20.09866 -19.38184 -18.63772 -16.94354 -16.21928 -15.49603 -15.23907 -15.10393 -14.72337 -14.46813 -14.15108 -14.01834 -13.67835 -13.27708 -13.13106 -12.82735 -12.48253 -12.32721 -11.84807 -11.78232 -11.68524 -11.53811 -11.18852 -11.14429 -10.93247 -10.77331 -10.69239 -10.40061 -10.29633 -10.11660 -10.02869 -9.96426 -9.88943 -9.64346 -9.52914 -9.05464 -8.52242 -7.35708 -6.04527 -3.99425 1.85524 3.24920 3.33220 3.34961 3.92244 3.99994 4.40636 4.61855 4.84338 4.88100 5.05015 5.13677 5.24150 5.25800 5.42490 5.51042 5.53710 5.58397 5.62342 5.67554 5.69586 5.71166 5.80925 5.87852 5.89752 6.02879 6.12214 6.14989 6.20080 6.24541 6.31467 6.38829 6.41127 6.47940 6.53779 6.61191 6.65686 6.84452 6.93788 7.06731 7.39001 7.40301 7.66872 7.92514 8.09151 8.68073 9.07473 9.57815 11.07871 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.006073 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.757456 B = 4609.299447 C = 5906.656807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.073 3.927 5 N -0.520 5.520 6 C 0.160 3.840 7 C -0.504 4.504 8 H 0.091 0.909 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.863 3.137 12 H -0.277 1.277 13 H -0.268 1.268 14 H -0.287 1.287 15 C 0.084 3.916 16 C -0.139 4.139 17 C -0.112 4.112 18 H 0.082 0.918 19 C -0.161 4.161 20 C 0.369 3.631 21 O -0.451 6.451 22 C -0.163 4.163 23 C -0.109 4.109 24 H 0.077 0.923 25 C -0.097 4.097 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.023 0.977 35 H 0.025 0.975 36 H -0.009 1.009 37 H 0.262 0.738 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.529 -6.784 -6.549 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.055 4.055 5 N -0.242 5.242 6 C 0.034 3.966 7 C -0.543 4.543 8 H 0.109 0.891 9 C -0.132 4.132 10 N -0.539 5.539 11 Si 0.691 3.309 12 H -0.203 1.203 13 H -0.193 1.193 14 H -0.213 1.213 15 C -0.026 4.026 16 C -0.179 4.179 17 C -0.130 4.130 18 H 0.100 0.900 19 C -0.198 4.198 20 C 0.244 3.756 21 O -0.323 6.323 22 C -0.201 4.201 23 C -0.128 4.128 24 H 0.095 0.905 25 C -0.135 4.135 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.566 -6.088 -6.519 13.828 hybrid contribution 1.086 -0.144 1.455 1.822 sum 11.653 -6.232 -5.064 14.151 Atomic orbital electron populations 1.21726 0.96291 1.00338 1.02247 1.21517 0.95668 0.98324 1.00443 1.21896 0.94347 0.94605 1.05141 1.21938 0.96432 0.89003 0.98175 1.62093 1.16118 1.13581 1.32361 1.20287 0.98405 0.92849 0.85013 1.21243 0.93262 1.32778 1.06980 0.89080 1.24885 0.94881 0.95782 0.97701 1.69876 1.16652 1.38404 1.28963 0.87051 0.82602 0.79299 0.81963 1.20291 1.19297 1.21295 1.23227 0.88063 0.95832 0.95440 1.22309 0.98557 0.96220 1.00786 1.21925 0.94153 0.99511 0.97452 0.89986 1.22383 0.97642 0.96666 1.03156 1.26311 0.80097 0.88315 0.80895 1.90392 1.28497 1.59366 1.54056 1.22098 0.99119 0.99928 0.98907 1.21904 0.97374 0.96093 0.97425 0.90480 1.21898 0.92786 0.97675 1.01144 0.93835 0.92355 0.92977 0.93379 0.92953 0.88002 0.92045 0.93256 0.95836 0.95731 0.99164 0.92777 0.90571 0.90908 0.92008 0.89408 0.88000 0.88775 0.87936 0.91385 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.15 0.37 -1.77 16 2 C -0.12 -1.82 5.93 -26.74 -0.16 -1.98 16 3 C -0.12 -2.24 4.14 -26.73 -0.11 -2.35 16 4 C 0.07 1.26 4.61 -3.82 -0.02 1.24 16 5 N -0.52 -9.73 4.39 -224.11 -0.98 -10.71 16 6 C 0.16 3.54 2.45 -4.98 -0.01 3.52 16 7 C -0.50 -13.31 7.91 -34.44 -0.27 -13.58 16 8 H 0.09 2.60 6.25 -52.49 -0.33 2.27 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 10 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 11 Si 0.86 20.87 27.44 -169.99 -4.67 16.21 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.27 -6.22 6.58 56.52 0.37 -5.85 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 C 0.08 1.26 3.00 -64.37 -0.19 1.06 16 16 C -0.14 -1.92 5.52 -26.46 -0.15 -2.07 16 17 C -0.11 -1.48 2.48 -90.31 -0.22 -1.70 16 18 H 0.08 1.30 6.86 -51.93 -0.36 0.95 16 19 C -0.16 -1.85 6.61 -27.19 -0.18 -2.03 16 20 C 0.37 4.79 8.03 -25.96 -0.21 4.59 16 21 O -0.45 -7.25 17.99 6.00 0.11 -7.14 16 22 C -0.16 -1.85 6.58 -27.73 -0.18 -2.03 16 23 C -0.11 -1.27 2.70 -90.28 -0.24 -1.52 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.10 -1.36 6.08 -25.88 -0.16 -1.52 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 2.26 5.57 -51.93 -0.29 1.98 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.02 0.42 7.25 -51.93 -0.38 0.04 16 35 H 0.02 0.55 4.07 -51.93 -0.21 0.34 16 36 H -0.01 -0.21 5.62 -51.93 -0.29 -0.50 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.08 1.02 7.78 -51.93 -0.40 0.62 16 39 H 0.07 1.17 5.77 -51.93 -0.30 0.87 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.45 6.41 -51.93 -0.33 1.11 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -29.18 343.43 -9.38 -38.56 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.95 Total: 2.09 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -1.84 Total: -18.32 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.21 Total: -36.57 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.18 -9.38 -38.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254952989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.174 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds