Wall clock time and date at job start Tue Mar 31 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 C 1.53003 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46929 * 177.44741 * 4 3 2 6 6 C 1.46898 * 111.00277 * 66.50647 * 5 4 3 7 7 C 1.50700 * 109.47217 * 76.03483 * 6 5 4 8 8 H 1.07994 * 120.00104 * 355.18975 * 7 6 5 9 9 C 1.37881 * 119.99874 * 175.18502 * 7 6 5 10 10 N 1.31514 * 119.99858 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99830 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47667 * 60.00186 * 11 9 7 13 13 H 1.48500 * 109.47310 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47415 * 300.00033 * 11 9 7 15 15 C 1.46902 * 110.99968 * 302.54750 * 5 4 3 16 16 H 1.09006 * 110.02747 * 59.30095 * 15 5 4 17 17 C 1.53822 * 110.04691 * 180.72701 * 15 5 4 18 18 C 1.54161 * 107.06169 * 120.74152 * 17 15 5 19 19 H 1.08998 * 113.00132 * 257.45169 * 18 17 15 20 20 C 1.54196 * 108.40561 * 131.37319 * 18 17 15 21 21 C 1.51339 * 107.17623 * 271.96452 * 20 18 17 22 22 O 1.20762 * 126.31517 * 180.64567 * 21 20 18 23 23 C 1.51771 * 107.37033 * 0.62085 * 21 20 18 24 24 C 1.54375 * 104.73562 * 336.34585 * 23 21 20 25 25 H 1.08994 * 113.37458 * 273.96928 * 24 23 21 26 26 C 1.54160 * 110.04924 * 297.87221 * 15 5 4 27 27 H 1.08992 * 109.47285 * 59.99591 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46873 * 300.00027 * 1 2 3 30 30 H 1.09003 * 109.46873 * 239.99973 * 2 1 3 31 31 H 1.09000 * 109.47089 * 120.00676 * 2 1 3 32 32 H 1.09004 * 109.46708 * 60.00404 * 3 2 1 33 33 H 1.09000 * 109.46692 * 300.00330 * 3 2 1 34 34 H 1.09001 * 109.46811 * 297.44517 * 4 3 2 35 35 H 1.09002 * 109.46715 * 57.44159 * 4 3 2 36 36 H 1.08998 * 109.47240 * 196.04295 * 6 5 4 37 37 H 1.09004 * 109.46700 * 316.04190 * 6 5 4 38 38 H 0.97001 * 119.99798 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.91811 * 240.10069 * 17 15 5 40 40 H 1.09001 * 109.91529 * 1.39362 * 17 15 5 41 41 H 1.08999 * 109.89187 * 31.34875 * 20 18 17 42 42 H 1.08998 * 109.89839 * 152.39852 * 20 18 17 43 43 H 1.09004 * 110.38777 * 95.16215 * 23 21 20 44 44 H 1.09006 * 110.38708 * 217.41831 * 23 21 20 45 45 H 1.08998 * 110.41615 * 335.28963 * 26 15 5 46 46 H 1.09008 * 110.41189 * 97.72539 * 26 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8260 -0.0623 6 6 3.7203 3.5598 1.1642 7 6 4.6438 3.1339 2.2762 8 1 5.3548 2.3376 2.1126 9 6 4.5812 3.7609 3.5026 10 7 3.7151 4.7303 3.7020 11 14 5.7264 3.2334 4.8808 12 1 7.1358 3.4223 4.4530 13 1 5.4604 4.0566 6.0878 14 1 5.4930 1.8014 5.1977 15 6 3.5391 3.5163 -1.2500 16 1 2.4493 3.5267 -1.2279 17 6 4.0792 4.9556 -1.3025 18 6 4.8556 5.0993 -2.6265 19 1 5.9366 5.0548 -2.4933 20 6 4.3873 6.3901 -3.3279 21 6 3.1898 6.0270 -4.1791 22 8 2.5592 6.7779 -4.8839 23 6 2.9280 4.5448 -3.9841 24 6 4.2844 3.9627 -3.5317 25 1 4.9380 3.6940 -4.3615 26 6 4.0350 2.8137 -2.5294 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9686 0.9112 35 1 3.9330 0.8895 -0.8671 36 1 3.8310 4.6300 0.9897 37 1 2.6897 3.3420 1.4444 38 1 3.6707 5.1711 4.5649 39 1 3.2512 5.6640 -1.2788 40 1 4.7470 5.1325 -0.4594 41 1 4.1018 7.1338 -2.5840 42 1 5.1871 6.7821 -3.9561 43 1 2.1727 4.3908 -3.2134 44 1 2.6109 4.0886 -4.9219 45 1 4.9612 2.2739 -2.3321 46 1 3.2721 2.1347 -2.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254952990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:36 Heat of formation + Delta-G solvation = -56.605165 kcal Electronic energy + Delta-G solvation = -23008.380973 eV Core-core repulsion = 19896.829663 eV Total energy + Delta-G solvation = -3111.551310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50218 -38.45178 -36.64731 -33.99634 -32.60070 -30.91329 -30.28127 -28.34847 -26.62095 -26.10910 -24.71190 -23.05722 -21.38105 -20.91070 -19.51077 -19.27381 -18.33020 -16.63720 -16.09328 -15.63275 -15.28238 -15.05908 -14.72008 -14.59898 -14.20276 -13.60581 -13.58132 -13.42535 -12.96844 -12.62077 -12.45426 -12.31501 -12.11721 -11.87398 -11.34217 -11.18718 -11.04556 -10.85207 -10.84405 -10.77938 -10.75578 -10.60954 -10.48489 -10.36769 -10.24789 -10.17375 -9.87575 -9.57214 -9.44218 -9.18218 -8.38904 -7.14272 -6.00674 -4.00978 1.92369 3.33576 3.38060 3.40759 4.18083 4.34021 4.43502 4.72676 4.79926 4.94093 5.14531 5.22732 5.24677 5.27594 5.34481 5.35513 5.45165 5.48904 5.55519 5.70572 5.75688 5.81587 5.87208 5.91841 5.95964 6.04527 6.05566 6.06371 6.13978 6.21830 6.22550 6.33031 6.38595 6.48039 6.51174 6.54797 6.71968 6.77200 6.88846 7.29902 7.42793 7.48473 7.84753 8.16304 8.25261 8.59000 9.06338 9.62595 11.09642 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.005622 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.046349 B = 4978.804636 C = 6445.017896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.158 4.158 4 C 0.064 3.936 5 N -0.526 5.526 6 C 0.183 3.817 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.079 3.921 16 H 0.035 0.965 17 C -0.118 4.118 18 C -0.082 4.082 19 H 0.097 0.903 20 C -0.182 4.182 21 C 0.372 3.628 22 O -0.459 6.459 23 C -0.178 4.178 24 C -0.089 4.089 25 H 0.090 0.910 26 C -0.106 4.106 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.037 0.963 37 H -0.006 1.006 38 H 0.261 0.739 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 -3.969 -13.022 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.249 5.249 6 C 0.059 3.941 7 C -0.540 4.540 8 H 0.079 0.921 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.030 4.030 16 H 0.052 0.948 17 C -0.156 4.156 18 C -0.101 4.101 19 H 0.115 0.885 20 C -0.219 4.219 21 C 0.249 3.751 22 O -0.333 6.333 23 C -0.215 4.215 24 C -0.108 4.108 25 H 0.109 0.891 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.012 0.988 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.125 0.875 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.950 -3.432 -13.266 13.735 hybrid contribution -0.399 -0.186 1.086 1.172 sum -1.348 -3.618 -12.180 12.777 Atomic orbital electron populations 1.21773 0.96600 1.00831 1.01604 1.21435 0.95200 0.97521 1.01469 1.22282 0.99157 0.96269 1.02027 1.22050 0.91264 0.91652 1.01470 1.62539 1.57715 1.01568 1.03065 1.19870 0.94893 0.94194 0.85183 1.21122 1.18976 1.18531 0.95323 0.92142 1.24960 0.95828 0.95173 0.98635 1.69941 1.35995 1.24120 1.23990 0.86615 0.81323 0.78439 0.81332 1.20246 1.21484 1.20389 1.22168 0.96074 0.93371 0.91367 0.94772 1.22415 0.99733 0.95933 0.97483 1.22644 1.00426 0.92125 0.94888 0.88493 1.22783 0.98281 1.00421 1.00457 1.25058 0.82784 0.90499 0.76798 1.90395 1.50056 1.58688 1.34134 1.22895 1.00056 0.95005 1.03568 1.22761 0.94568 0.95930 0.97539 0.89147 1.22311 1.01778 0.96510 0.93775 0.93226 0.93349 0.92800 0.92678 0.92089 0.91179 0.92756 0.90481 0.92742 0.94508 0.98831 0.92988 0.92518 0.89017 0.88244 0.88798 0.87536 0.89494 0.90170 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.60 5.93 -26.73 -0.16 -1.76 16 3 C -0.16 -2.56 4.58 -26.73 -0.12 -2.69 16 4 C 0.06 1.13 4.99 -3.82 -0.02 1.11 16 5 N -0.53 -10.26 4.41 -226.84 -1.00 -11.26 16 6 C 0.18 4.45 4.33 -4.98 -0.02 4.43 16 7 C -0.50 -13.51 8.66 -34.44 -0.30 -13.81 16 8 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 9 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 11 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.08 1.26 1.50 -66.68 -0.10 1.16 16 16 H 0.03 0.57 5.78 -51.93 -0.30 0.27 16 17 C -0.12 -1.83 4.64 -25.70 -0.12 -1.95 16 18 C -0.08 -0.99 4.06 -87.71 -0.36 -1.35 16 19 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 20 C -0.18 -2.04 5.94 -26.94 -0.16 -2.20 16 21 C 0.37 4.74 7.87 -28.19 -0.22 4.51 16 22 O -0.46 -7.29 17.99 6.00 0.11 -7.18 16 23 C -0.18 -1.97 5.75 -26.63 -0.15 -2.12 16 24 C -0.09 -0.97 4.14 -87.44 -0.36 -1.33 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 C -0.11 -1.35 4.67 -25.34 -0.12 -1.47 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.35 6.40 -51.93 -0.33 1.01 16 33 H 0.05 0.84 6.21 -51.93 -0.32 0.52 16 34 H 0.08 1.52 7.39 -51.93 -0.38 1.14 16 35 H 0.05 0.84 7.14 -51.93 -0.37 0.47 16 36 H 0.04 0.95 5.80 -51.93 -0.30 0.65 16 37 H -0.01 -0.16 6.01 -51.93 -0.31 -0.47 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.06 0.87 7.41 -51.93 -0.39 0.48 16 40 H 0.09 1.71 6.41 -51.93 -0.33 1.38 16 41 H 0.10 1.14 7.62 -51.93 -0.40 0.75 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 1.24 6.75 -51.93 -0.35 0.89 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 46 H 0.06 0.69 8.12 -51.92 -0.42 0.27 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -29.29 347.09 -9.84 -39.13 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.96 Total: 0.71 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.94 Total: -17.51 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.26 Total: -36.67 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.11 Total: -7.18 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.29 -9.84 -39.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254952990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.475 kcal (2) G-P(sol) polarization free energy of solvation -29.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds