Wall clock time and date at job start Tue Mar 31 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47299 * 2 1 4 4 C 1.53003 * 109.47103 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46929 * 177.44741 * 4 3 2 6 6 C 1.46898 * 111.00277 * 66.50647 * 5 4 3 7 7 C 1.50700 * 109.47217 * 76.03483 * 6 5 4 8 8 H 1.07994 * 120.00104 * 355.18975 * 7 6 5 9 9 C 1.37881 * 119.99874 * 175.18502 * 7 6 5 10 10 N 1.31514 * 119.99858 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99830 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47667 * 60.00186 * 11 9 7 13 13 H 1.48500 * 109.47310 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47415 * 300.00033 * 11 9 7 15 15 C 1.46902 * 110.99968 * 302.54750 * 5 4 3 16 16 H 1.09006 * 110.02747 * 59.30095 * 15 5 4 17 17 C 1.53822 * 110.04691 * 180.72701 * 15 5 4 18 18 C 1.54161 * 107.06169 * 120.74152 * 17 15 5 19 19 H 1.08998 * 113.00132 * 257.45169 * 18 17 15 20 20 C 1.54196 * 108.40561 * 131.37319 * 18 17 15 21 21 C 1.51339 * 107.17623 * 271.96452 * 20 18 17 22 22 O 1.20762 * 126.31517 * 180.64567 * 21 20 18 23 23 C 1.51771 * 107.37033 * 0.62085 * 21 20 18 24 24 C 1.54375 * 104.73562 * 336.34585 * 23 21 20 25 25 H 1.08994 * 113.37458 * 273.96928 * 24 23 21 26 26 C 1.54160 * 110.04924 * 297.87221 * 15 5 4 27 27 H 1.08992 * 109.47285 * 59.99591 * 1 2 3 28 28 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46873 * 300.00027 * 1 2 3 30 30 H 1.09003 * 109.46873 * 239.99973 * 2 1 3 31 31 H 1.09000 * 109.47089 * 120.00676 * 2 1 3 32 32 H 1.09004 * 109.46708 * 60.00404 * 3 2 1 33 33 H 1.09000 * 109.46692 * 300.00330 * 3 2 1 34 34 H 1.09001 * 109.46811 * 297.44517 * 4 3 2 35 35 H 1.09002 * 109.46715 * 57.44159 * 4 3 2 36 36 H 1.08998 * 109.47240 * 196.04295 * 6 5 4 37 37 H 1.09004 * 109.46700 * 316.04190 * 6 5 4 38 38 H 0.97001 * 119.99798 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.91811 * 240.10069 * 17 15 5 40 40 H 1.09001 * 109.91529 * 1.39362 * 17 15 5 41 41 H 1.08999 * 109.89187 * 31.34875 * 20 18 17 42 42 H 1.08998 * 109.89839 * 152.39852 * 20 18 17 43 43 H 1.09004 * 110.38777 * 95.16215 * 23 21 20 44 44 H 1.09006 * 110.38708 * 217.41831 * 23 21 20 45 45 H 1.08998 * 110.41615 * 335.28963 * 26 15 5 46 46 H 1.09008 * 110.41189 * 97.72539 * 26 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0597 2.8260 -0.0623 6 6 3.7203 3.5598 1.1642 7 6 4.6438 3.1339 2.2762 8 1 5.3548 2.3376 2.1126 9 6 4.5812 3.7609 3.5026 10 7 3.7151 4.7303 3.7020 11 14 5.7264 3.2334 4.8808 12 1 7.1358 3.4223 4.4530 13 1 5.4604 4.0566 6.0878 14 1 5.4930 1.8014 5.1977 15 6 3.5391 3.5163 -1.2500 16 1 2.4493 3.5267 -1.2279 17 6 4.0792 4.9556 -1.3025 18 6 4.8556 5.0993 -2.6265 19 1 5.9366 5.0548 -2.4933 20 6 4.3873 6.3901 -3.3279 21 6 3.1898 6.0270 -4.1791 22 8 2.5592 6.7779 -4.8839 23 6 2.9280 4.5448 -3.9841 24 6 4.2844 3.9627 -3.5317 25 1 4.9380 3.6940 -4.3615 26 6 4.0350 2.8137 -2.5294 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.9686 0.9112 35 1 3.9330 0.8895 -0.8671 36 1 3.8310 4.6300 0.9897 37 1 2.6897 3.3420 1.4444 38 1 3.6707 5.1711 4.5649 39 1 3.2512 5.6640 -1.2788 40 1 4.7470 5.1325 -0.4594 41 1 4.1018 7.1338 -2.5840 42 1 5.1871 6.7821 -3.9561 43 1 2.1727 4.3908 -3.2134 44 1 2.6109 4.0886 -4.9219 45 1 4.9612 2.2739 -2.3321 46 1 3.2721 2.1347 -2.9104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254952990.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:35 Heat of formation + Delta-G solvation = -72.968991 kcal Electronic energy + Delta-G solvation = -23009.090561 eV Core-core repulsion = 19896.829663 eV Total energy + Delta-G solvation = -3112.260898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59063 -39.71089 -37.93345 -35.37730 -34.49431 -32.13046 -31.38026 -29.87452 -28.16862 -27.21588 -26.01383 -24.69924 -22.80177 -22.18919 -20.50726 -20.28961 -19.71165 -18.35787 -17.63195 -16.83125 -16.58615 -16.41572 -16.20425 -15.80471 -15.45785 -15.10014 -14.78630 -14.56552 -14.21428 -14.02329 -13.74387 -13.60960 -13.41042 -13.11617 -12.95124 -12.75512 -12.55587 -12.32940 -12.28166 -12.03800 -11.98106 -11.78095 -11.75316 -11.60592 -11.53034 -11.37069 -11.31904 -11.12860 -11.10877 -10.51700 -10.45340 -8.77397 -8.14057 -6.22540 0.91959 1.41541 1.43750 1.51461 2.42879 3.16923 3.21855 3.35827 3.44151 3.75876 3.80289 4.02896 4.05286 4.14148 4.29629 4.33230 4.35975 4.47981 4.52461 4.57746 4.61601 4.73126 4.77846 4.83906 4.86215 4.89156 4.93487 4.95014 5.04927 5.07063 5.14213 5.17889 5.24286 5.27934 5.32885 5.36803 5.43278 5.44401 5.50534 5.52170 5.58115 5.74791 6.18849 6.49103 6.53263 6.82393 6.94230 7.46148 8.95265 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.005622 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.046349 B = 4978.804636 C = 6445.017896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.066 3.934 5 N -0.532 5.532 6 C 0.201 3.799 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.001 3.999 10 N -0.937 5.937 11 Si 0.961 3.039 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.075 3.925 16 H 0.026 0.974 17 C -0.118 4.118 18 C -0.075 4.075 19 H 0.106 0.894 20 C -0.178 4.178 21 C 0.374 3.626 22 O -0.494 6.494 23 C -0.174 4.174 24 C -0.073 4.073 25 H 0.123 0.877 26 C -0.097 4.097 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.013 0.987 37 H -0.036 1.036 38 H 0.261 0.739 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -5.679 -15.055 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.187 4.187 4 C -0.063 4.063 5 N -0.255 5.255 6 C 0.075 3.925 7 C -0.551 4.551 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.033 4.033 16 H 0.044 0.956 17 C -0.156 4.156 18 C -0.094 4.094 19 H 0.125 0.875 20 C -0.215 4.215 21 C 0.253 3.747 22 O -0.371 6.371 23 C -0.212 4.212 24 C -0.092 4.092 25 H 0.141 0.859 26 C -0.134 4.134 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.031 0.969 37 H -0.018 1.018 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.011 -5.166 -15.310 16.158 hybrid contribution -0.721 0.358 1.725 1.903 sum -0.709 -4.808 -13.585 14.428 Atomic orbital electron populations 1.21756 0.95507 1.02078 1.01282 1.21414 0.96167 0.95371 1.02245 1.22149 0.98095 0.98028 1.00436 1.22067 0.92187 0.90504 1.01501 1.62456 1.58357 1.02320 1.02319 1.19470 0.92699 0.93332 0.87025 1.21465 1.19033 1.18221 0.96402 0.92417 1.25816 0.97360 0.95178 1.01232 1.70076 1.37732 1.25379 1.24587 0.85563 0.79423 0.78266 0.78126 1.19355 1.21207 1.19530 1.22320 0.95673 0.93844 0.91499 0.95597 1.22357 0.99131 0.95722 0.98345 1.22587 1.00437 0.93389 0.92968 0.87543 1.22751 0.98538 0.99895 1.00298 1.25345 0.82436 0.91096 0.75793 1.90390 1.51220 1.59679 1.35775 1.22894 1.00068 0.93852 1.04354 1.22770 0.94698 0.94161 0.97566 0.85887 1.22245 1.02076 0.97109 0.92012 0.92368 0.91294 0.94370 0.90230 0.92906 0.95333 0.91726 0.93212 0.89494 0.96867 1.01793 0.93017 0.93306 0.92875 0.88949 0.86463 0.88265 0.87426 0.90246 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.11 -2.93 5.93 30.59 0.18 -2.75 16 3 C -0.15 -4.82 4.58 30.60 0.14 -4.68 16 4 C 0.07 2.30 4.99 86.30 0.43 2.73 16 5 N -0.53 -21.18 4.41 -871.58 -3.84 -25.02 16 6 C 0.20 10.31 4.33 85.56 0.37 10.68 16 7 C -0.51 -28.67 8.66 25.60 0.22 -28.45 16 8 H 0.06 3.19 7.64 -2.91 -0.02 3.16 16 9 C 0.00 0.08 5.46 84.66 0.46 0.55 16 10 N -0.94 -56.43 13.29 21.45 0.28 -56.15 16 11 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.08 2.38 1.50 45.58 0.07 2.45 16 16 H 0.03 0.87 5.78 -2.38 -0.01 0.86 16 17 C -0.12 -3.72 4.64 31.26 0.15 -3.58 16 18 C -0.08 -1.68 4.06 -8.91 -0.04 -1.71 16 19 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.18 -3.69 5.94 30.46 0.18 -3.51 16 21 C 0.37 8.88 7.87 29.65 0.23 9.11 16 22 O -0.49 -15.20 17.99 -1.46 -0.03 -15.22 16 23 C -0.17 -3.37 5.75 30.66 0.18 -3.20 16 24 C -0.07 -1.34 4.14 -8.73 -0.04 -1.37 16 25 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 26 C -0.10 -2.17 4.67 31.49 0.15 -2.03 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.15 6.40 -2.39 -0.02 1.14 16 33 H 0.06 1.95 6.21 -2.39 -0.01 1.93 16 34 H 0.05 2.00 7.39 -2.39 -0.02 1.99 16 35 H 0.09 2.49 7.14 -2.39 -0.02 2.48 16 36 H 0.01 0.74 5.80 -2.39 -0.01 0.72 16 37 H -0.04 -2.00 6.01 -2.38 -0.01 -2.01 16 38 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.05 1.57 7.41 -2.39 -0.02 1.55 16 40 H 0.05 2.09 6.41 -2.39 -0.02 2.08 16 41 H 0.09 2.10 7.62 -2.39 -0.02 2.08 16 42 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 2.14 6.75 -2.39 -0.02 2.12 16 44 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.08 1.87 7.86 -2.39 -0.02 1.85 16 46 H 0.08 1.50 8.12 -2.38 -0.02 1.48 16 Total: -1.00 -66.57 347.09 2.78 -63.79 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.94 Total: 14.66 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.40 Total: -28.47 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.56 Total: -81.17 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.03 Total: -15.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.57 2.78 -63.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254952990.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.181 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds