Wall clock time and date at job start Tue Mar 31 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46768 * 2 1 4 4 H 1.08998 * 109.47516 * 304.46294 * 3 2 1 5 5 C 1.50703 * 109.46978 * 184.46217 * 3 2 1 6 6 H 1.07996 * 120.00477 * 240.00713 * 5 3 2 7 7 C 1.37878 * 119.99903 * 59.99715 * 5 3 2 8 8 N 1.31521 * 119.99959 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00089 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46985 * 90.00398 * 9 7 5 11 11 H 1.48506 * 109.46974 * 210.00110 * 9 7 5 12 12 H 1.48500 * 109.46860 * 330.00138 * 9 7 5 13 13 N 1.46901 * 109.47531 * 64.46576 * 3 2 1 14 14 C 1.46897 * 111.00158 * 206.30698 * 13 3 2 15 15 H 1.09000 * 109.46847 * 327.91637 * 14 13 3 16 16 C 1.53005 * 109.46997 * 87.91890 * 14 13 3 17 17 H 1.08996 * 109.46848 * 299.99717 * 16 14 13 18 18 C 1.53001 * 109.46929 * 180.02562 * 16 14 13 19 19 C 1.53001 * 109.47052 * 300.00028 * 18 16 14 20 20 H 1.08995 * 109.47209 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.47229 * 59.99832 * 19 18 16 22 22 C 1.52999 * 109.46902 * 207.91693 * 14 13 3 23 23 H 1.09002 * 109.47006 * 60.00567 * 22 14 13 24 24 C 1.52997 * 109.47523 * 299.99940 * 22 14 13 25 25 C 1.53005 * 109.47194 * 300.00304 * 24 22 14 26 26 O 1.42896 * 109.47025 * 179.97438 * 25 24 22 27 27 C 1.52997 * 109.46846 * 60.00056 * 16 14 13 28 28 C 1.53001 * 109.46929 * 299.99918 * 25 24 22 29 29 H 1.08998 * 109.47239 * 296.92509 * 1 2 3 30 30 H 1.09000 * 109.47175 * 56.92548 * 1 2 3 31 31 H 1.09002 * 109.47345 * 176.92142 * 1 2 3 32 32 H 1.08993 * 109.47087 * 239.99886 * 2 1 3 33 33 H 1.08997 * 109.46646 * 120.00089 * 2 1 3 34 34 H 0.96994 * 120.00074 * 179.97438 * 8 7 5 35 35 H 1.00905 * 110.99456 * 330.26258 * 13 3 2 36 36 H 1.08997 * 109.47196 * 180.02562 * 18 16 14 37 37 H 1.09000 * 109.46980 * 59.99707 * 18 16 14 38 38 H 1.09008 * 109.46886 * 179.97438 * 21 19 18 39 39 H 1.09000 * 109.46778 * 60.00246 * 21 19 18 40 40 H 1.09001 * 109.47222 * 59.99813 * 24 22 14 41 41 H 1.08996 * 109.47620 * 180.02562 * 24 22 14 42 42 H 0.96696 * 113.99713 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47517 * 299.99476 * 27 16 14 44 44 H 1.09010 * 109.47001 * 179.97438 * 27 16 14 45 45 H 1.08997 * 109.47196 * 180.02562 * 28 25 24 46 46 H 1.08999 * 109.46900 * 300.00234 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6128 1.9789 -0.8473 5 6 3.5429 1.4440 -0.1105 6 1 4.1414 1.8909 0.6695 7 6 4.1540 0.8746 -1.2075 8 7 3.4253 0.3306 -2.1577 9 14 6.0170 0.8758 -1.3443 10 1 6.5603 -0.3543 -0.7143 11 1 6.4082 0.9127 -2.7764 12 1 6.5634 2.0699 -0.6509 13 7 1.6403 2.1032 1.2497 14 6 1.5329 3.5567 1.0657 15 1 2.2607 3.8836 0.3231 16 6 0.1227 3.9073 0.5868 17 1 -0.0744 3.4056 -0.3606 18 6 0.0110 5.4210 0.3946 19 6 0.2880 6.1257 1.7241 20 1 0.2080 7.2041 1.5873 21 6 1.6981 5.7751 2.2031 22 6 1.8096 4.2608 2.3956 23 1 2.8143 4.0111 2.7367 24 6 0.7881 3.8018 3.4380 25 6 -0.6221 4.1524 2.9591 26 8 -1.5762 3.7232 3.9324 27 6 -0.8988 3.4482 1.6293 28 6 -0.7340 5.6663 2.7675 29 1 -0.3633 0.4653 0.9162 30 1 -0.3633 0.5608 -0.8611 31 1 -0.3634 -1.0262 -0.0552 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8552 -0.0696 -2.9296 35 1 0.7766 1.7184 1.6019 36 1 -0.9938 5.6709 0.0538 37 1 0.7387 5.7476 -0.3483 38 1 1.8956 6.2775 3.1501 39 1 2.4258 6.1017 1.4602 40 1 0.8678 2.7234 3.5745 41 1 0.9850 4.3038 4.3853 42 1 -2.4938 3.9132 3.6941 43 1 -0.8191 2.3697 1.7658 44 1 -1.9035 3.6984 1.2883 45 1 -1.7387 5.9161 2.4267 46 1 -0.5367 6.1679 3.7148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255148909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:12 Heat of formation + Delta-G solvation = -77.393824 kcal Electronic energy + Delta-G solvation = -24342.882758 eV Core-core repulsion = 21230.429984 eV Total energy + Delta-G solvation = -3112.452774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.40697 -36.68368 -35.75335 -32.97368 -32.38628 -31.50193 -30.69699 -29.21583 -26.40313 -25.75698 -24.54791 -22.75324 -21.37715 -21.09031 -20.66465 -19.39966 -17.30127 -16.70948 -16.14844 -15.21869 -14.82601 -14.67499 -14.29768 -14.19160 -13.86352 -13.42785 -13.35681 -12.99419 -12.81453 -12.57839 -12.23738 -12.20027 -12.12335 -11.71884 -11.60408 -11.18769 -10.89237 -10.84684 -10.73454 -10.60829 -10.59061 -10.48693 -10.35299 -9.92496 -9.84210 -9.64625 -9.54387 -9.49579 -9.15122 -8.95872 -8.31559 -7.11339 -5.93469 -3.97118 3.34155 3.40609 3.44482 4.22981 4.47398 4.65811 4.69572 4.95747 5.15318 5.22147 5.27891 5.36173 5.38832 5.42233 5.45134 5.57060 5.60037 5.72960 5.80423 5.86720 5.95604 6.07228 6.11115 6.12498 6.17949 6.21156 6.22722 6.26670 6.30174 6.39875 6.40965 6.48164 6.66382 6.71247 6.82289 6.86433 6.87713 7.13175 7.23047 7.56557 7.75592 7.81849 7.97013 8.38787 8.45593 8.83545 9.11599 9.67931 11.11777 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.005978 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.987241 B = 4682.981403 C = 5224.857275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.106 3.894 15 H 0.082 0.918 16 C -0.113 4.113 17 H 0.071 0.929 18 C -0.106 4.106 19 C -0.082 4.082 20 H 0.066 0.934 21 C -0.111 4.111 22 C -0.071 4.071 23 H 0.082 0.918 24 C -0.092 4.092 25 C 0.136 3.864 26 O -0.563 6.563 27 C -0.135 4.135 28 C -0.133 4.133 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.258 0.742 35 H 0.319 0.681 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.369 0.631 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 9.869 7.132 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.313 5.313 14 C -0.005 4.005 15 H 0.100 0.900 16 C -0.133 4.133 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.100 4.100 20 H 0.085 0.915 21 C -0.149 4.149 22 C -0.090 4.090 23 H 0.100 0.900 24 C -0.129 4.129 25 C 0.096 3.904 26 O -0.368 6.368 27 C -0.173 4.173 28 C -0.170 4.170 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.215 0.785 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.205 9.574 7.506 14.674 hybrid contribution -0.449 0.174 -1.094 1.195 sum -8.654 9.748 6.412 14.527 Atomic orbital electron populations 1.21908 0.99761 0.99591 0.99477 1.21783 0.91077 1.00656 1.03018 1.19146 0.95134 0.89698 0.84775 0.98050 1.21245 0.91289 1.35861 1.04488 0.92085 1.24957 0.97993 0.95771 0.95858 1.69874 1.34680 1.39423 1.09793 0.86579 0.86050 0.78376 0.76854 1.20830 1.21525 1.20027 1.60809 1.35943 1.01345 1.33182 1.21411 0.93577 0.90057 0.95444 0.89963 1.21735 0.97481 0.95640 0.98472 0.91063 1.21520 1.00984 0.95210 0.96654 1.21033 0.95185 0.98957 0.94854 0.91533 1.21615 0.95976 0.96521 1.00820 1.21072 0.99119 0.93226 0.95559 0.90005 1.21353 0.91037 1.02540 0.98016 1.21154 0.89903 0.91981 0.87400 1.86563 1.18473 1.84420 1.47375 1.22181 0.98697 1.01079 0.95358 1.22174 0.99028 0.96451 0.99393 0.94661 0.93975 0.94452 0.88338 0.94125 0.93187 0.86072 0.92663 0.91657 0.92262 0.91664 0.90438 0.92328 0.78480 0.90974 0.92518 0.92404 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.68 37.16 0.36 -2.55 16 2 C -0.13 -2.98 5.36 -26.73 -0.14 -3.12 16 3 C 0.22 5.34 1.84 -68.86 -0.13 5.21 16 4 H 0.00 0.05 7.34 -51.93 -0.38 -0.33 16 5 C -0.49 -13.34 8.58 -34.44 -0.30 -13.64 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.42 11.30 55.43 0.63 -24.79 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.99 5.51 -100.95 -0.56 -14.55 16 14 C 0.11 1.91 1.91 -67.71 -0.13 1.78 16 15 H 0.08 1.70 7.66 -51.93 -0.40 1.31 16 16 C -0.11 -1.76 2.80 -90.62 -0.25 -2.01 16 17 H 0.07 1.24 7.67 -51.93 -0.40 0.85 16 18 C -0.11 -1.39 5.19 -26.73 -0.14 -1.53 16 19 C -0.08 -0.98 3.20 -90.56 -0.29 -1.27 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.11 -1.45 5.20 -26.70 -0.14 -1.59 16 22 C -0.07 -1.10 2.91 -90.60 -0.26 -1.36 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 C -0.09 -1.38 4.61 -26.73 -0.12 -1.50 16 25 C 0.14 1.81 1.15 -90.62 -0.10 1.71 16 26 O -0.56 -7.35 12.98 -35.23 -0.46 -7.81 16 27 C -0.14 -1.90 4.56 -26.73 -0.12 -2.02 16 28 C -0.13 -1.54 4.82 -26.68 -0.13 -1.67 16 29 H 0.03 0.62 5.73 -51.93 -0.30 0.33 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.61 5.96 -51.93 -0.31 2.30 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.32 6.18 3.54 -39.29 -0.14 6.04 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.30 7.29 -51.93 -0.38 0.92 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.37 3.34 9.04 45.56 0.41 3.76 16 43 H 0.07 1.13 5.44 -51.93 -0.28 0.84 16 44 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -28.31 329.37 -9.65 -37.96 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.21 Total: 9.94 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -1.99 Total: -22.18 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.07 Total: -39.34 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.46 Total: -7.81 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.31 -9.65 -37.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255148909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.436 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds