Wall clock time and date at job start Tue Mar 31 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 H 1.09000 * 109.47397 * 179.71948 * 3 2 1 5 5 C 1.50704 * 109.46870 * 299.71787 * 3 2 1 6 6 H 1.08001 * 119.99699 * 119.99668 * 5 3 2 7 7 C 1.37872 * 120.00152 * 299.99618 * 5 3 2 8 8 N 1.31521 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46988 * 59.99983 * 9 7 5 11 11 H 1.48497 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47215 * 300.00450 * 9 7 5 13 13 N 1.46901 * 109.46881 * 59.71614 * 3 2 1 14 14 C 1.46891 * 111.00028 * 85.70855 * 13 3 2 15 15 H 1.09007 * 109.47010 * 323.66554 * 14 13 3 16 16 C 1.52999 * 109.47456 * 83.66353 * 14 13 3 17 17 H 1.09004 * 109.47369 * 300.00304 * 16 14 13 18 18 C 1.52995 * 109.47273 * 179.97438 * 16 14 13 19 19 C 1.52996 * 109.47589 * 300.00340 * 18 16 14 20 20 H 1.09000 * 109.47385 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47091 * 59.99548 * 19 18 16 22 22 C 1.52995 * 109.47273 * 300.00645 * 21 19 18 23 23 H 1.09004 * 109.46989 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47122 * 299.99520 * 22 21 19 25 25 C 1.52999 * 109.47026 * 60.00055 * 24 22 21 26 26 O 1.42896 * 109.47326 * 180.02562 * 25 24 22 27 27 C 1.52999 * 109.47289 * 59.99854 * 25 24 22 28 28 C 1.52997 * 109.47284 * 299.99952 * 19 18 16 29 29 H 1.08998 * 109.47461 * 295.65032 * 1 2 3 30 30 H 1.09000 * 109.47167 * 55.65838 * 1 2 3 31 31 H 1.09002 * 109.47095 * 175.65447 * 1 2 3 32 32 H 1.09009 * 109.47434 * 240.00285 * 2 1 3 33 33 H 1.08995 * 109.47802 * 120.00015 * 2 1 3 34 34 H 0.97003 * 119.99914 * 179.97438 * 8 7 5 35 35 H 1.00906 * 110.99657 * 209.66002 * 13 3 2 36 36 H 1.09006 * 109.47465 * 180.02562 * 18 16 14 37 37 H 1.09004 * 109.47159 * 60.00813 * 18 16 14 38 38 H 1.09007 * 109.46847 * 60.00410 * 21 19 18 39 39 H 1.08998 * 109.47465 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.47407 * 180.02562 * 24 22 21 41 41 H 1.09004 * 109.47033 * 300.00141 * 24 22 21 42 42 H 0.96700 * 114.00071 * 180.02562 * 26 25 24 43 43 H 1.09011 * 109.46695 * 59.99714 * 27 25 24 44 44 H 1.08994 * 109.47405 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47756 * 179.97438 * 28 19 18 46 46 H 1.09004 * 109.47261 * 300.00094 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0050 5 6 1.5433 2.1509 -1.2340 6 1 0.9219 3.0291 -1.1392 7 6 1.8822 1.6778 -2.4839 8 7 2.6386 0.6081 -2.5993 9 14 1.2672 2.5562 -4.0135 10 1 1.7627 3.9561 -4.0132 11 1 1.7673 1.8538 -5.2225 12 1 -0.2178 2.5568 -4.0206 13 7 1.5447 2.1370 1.1960 14 6 2.4320 1.9067 2.3437 15 1 2.8183 0.8881 2.3057 16 6 3.5977 2.8964 2.2938 17 1 4.1561 2.7538 1.3686 18 6 4.5216 2.6569 3.4896 19 6 3.7376 2.8574 4.7881 20 1 4.3958 2.6864 5.6400 21 6 2.5719 1.8677 4.8380 22 6 1.6481 2.1072 3.6422 23 1 0.8173 1.4024 3.6781 24 6 1.1058 3.5368 3.6949 25 6 2.2714 4.5266 3.6451 26 8 1.7651 5.8619 3.6949 27 6 3.0556 4.3261 2.3467 28 6 3.1954 4.2871 4.8409 29 1 -0.3634 0.4448 0.9264 30 1 -0.3633 0.5797 -0.8485 31 1 -0.3633 -1.0247 -0.0779 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.8767 0.2750 -3.4787 35 1 1.4302 3.1239 1.0197 36 1 5.3519 3.3623 3.4544 37 1 4.9080 1.6384 3.4520 38 1 2.9583 0.8491 4.8004 39 1 2.0136 2.0102 5.7632 40 1 0.4472 3.7073 2.8433 41 1 0.5472 3.6797 4.6200 42 1 2.4502 6.5437 3.6668 43 1 2.3972 4.4967 1.4947 44 1 3.8857 5.0315 2.3109 45 1 2.6365 4.4298 5.7657 46 1 4.0258 4.9923 4.8053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255148911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:16 Heat of formation + Delta-G solvation = -78.204468 kcal Electronic energy + Delta-G solvation = -24294.687680 eV Core-core repulsion = 21182.199754 eV Total energy + Delta-G solvation = -3112.487926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42290 -36.65727 -35.68661 -33.09836 -32.40611 -31.29948 -30.52100 -29.17060 -26.24856 -25.75925 -24.35998 -23.17904 -21.36464 -21.11089 -20.85749 -18.85509 -17.34432 -16.84375 -16.21754 -14.99805 -14.72599 -14.57390 -14.30037 -14.19742 -13.78669 -13.57936 -13.32515 -12.94123 -12.86508 -12.40271 -12.26284 -12.19480 -12.00149 -11.75825 -11.52529 -11.07240 -10.89767 -10.79210 -10.72766 -10.62467 -10.56666 -10.34656 -10.32911 -10.07917 -9.78563 -9.62783 -9.47040 -9.29940 -9.19224 -8.73067 -8.43732 -7.11958 -5.99891 -4.05023 3.31457 3.36233 3.39277 4.23827 4.41836 4.65001 4.69507 4.95064 5.16060 5.21943 5.27750 5.32575 5.37653 5.42179 5.44429 5.53422 5.57686 5.72705 5.77073 5.86659 5.95042 6.06996 6.10878 6.16749 6.19267 6.22576 6.27979 6.34148 6.46737 6.55520 6.61241 6.67864 6.72261 6.77039 6.80532 6.93245 7.27584 7.39264 7.54286 7.77982 7.78782 7.82606 7.89634 8.31765 8.46259 8.73740 9.05593 9.59852 11.05806 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.005776 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.340415 B = 4846.159969 C = 5219.955612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.100 3.900 15 H 0.072 0.928 16 C -0.113 4.113 17 H 0.075 0.925 18 C -0.106 4.106 19 C -0.082 4.082 20 H 0.066 0.934 21 C -0.111 4.111 22 C -0.070 4.070 23 H 0.079 0.921 24 C -0.092 4.092 25 C 0.136 3.864 26 O -0.563 6.563 27 C -0.135 4.135 28 C -0.133 4.133 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.011 0.989 32 H 0.085 0.915 33 H 0.008 0.992 34 H 0.260 0.740 35 H 0.331 0.669 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.370 0.630 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 4.883 14.124 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.311 5.311 14 C -0.011 4.011 15 H 0.090 0.910 16 C -0.133 4.133 17 H 0.094 0.906 18 C -0.144 4.144 19 C -0.100 4.100 20 H 0.084 0.916 21 C -0.149 4.149 22 C -0.089 4.089 23 H 0.098 0.902 24 C -0.130 4.130 25 C 0.096 3.904 26 O -0.368 6.368 27 C -0.173 4.173 28 C -0.171 4.171 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.216 0.784 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.746 3.928 14.143 14.782 hybrid contribution 1.161 1.287 -1.219 2.119 sum 2.908 5.215 12.925 14.237 Atomic orbital electron populations 1.21442 0.97588 0.97288 1.01323 1.21442 0.94968 0.98430 0.99271 1.19094 0.92874 0.91302 0.85731 0.98219 1.21164 1.31502 1.11891 0.90472 0.92538 1.24864 0.95069 0.94988 0.98819 1.69877 1.36684 1.22682 1.23550 0.86681 0.79296 0.79651 0.82502 1.20448 1.21387 1.20220 1.60828 1.48322 1.16010 1.05905 1.21463 0.90403 0.97620 0.91621 0.91025 1.21719 0.97925 0.95280 0.98394 0.90631 1.21531 0.97334 1.01338 0.94205 1.21010 0.96817 0.94449 0.97741 0.91584 1.21598 0.96329 0.98774 0.98159 1.21048 0.97876 0.95917 0.94095 0.90241 1.21347 0.96202 0.92893 1.02557 1.21151 0.93784 0.82227 0.93280 1.86557 1.37773 1.15515 1.96969 1.22146 0.99673 0.97208 0.98247 1.22161 0.98940 0.97083 0.98894 0.93933 0.92581 0.96939 0.89673 0.97302 0.92981 0.84860 0.92599 0.91895 0.91872 0.92228 0.90291 0.92322 0.78405 0.90545 0.92487 0.91677 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.15 0.35 -2.32 16 2 C -0.10 -2.46 5.57 -26.73 -0.15 -2.61 16 3 C 0.22 5.25 2.11 -68.86 -0.15 5.10 16 4 H 0.00 0.00 7.02 -51.93 -0.36 -0.36 16 5 C -0.51 -13.55 7.27 -34.44 -0.25 -13.80 16 6 H 0.06 1.50 7.61 -52.49 -0.40 1.10 16 7 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -13.71 4.90 -100.95 -0.49 -14.20 16 14 C 0.10 1.71 1.95 -67.72 -0.13 1.58 16 15 H 0.07 1.33 7.17 -51.92 -0.37 0.96 16 16 C -0.11 -1.77 2.76 -90.62 -0.25 -2.02 16 17 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 18 C -0.11 -1.37 5.19 -26.74 -0.14 -1.51 16 19 C -0.08 -0.95 3.19 -90.62 -0.29 -1.24 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 C -0.11 -1.35 5.19 -26.73 -0.14 -1.49 16 22 C -0.07 -1.03 2.91 -90.63 -0.26 -1.29 16 23 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 24 C -0.09 -1.36 4.60 -26.73 -0.12 -1.48 16 25 C 0.14 1.83 1.15 -90.62 -0.10 1.72 16 26 O -0.56 -7.57 12.98 -35.23 -0.46 -8.03 16 27 C -0.13 -1.98 4.56 -26.73 -0.12 -2.11 16 28 C -0.13 -1.54 4.81 -26.73 -0.13 -1.67 16 29 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 30 H 0.06 1.36 7.08 -51.93 -0.37 0.99 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 2.28 6.06 -51.92 -0.31 1.97 16 33 H 0.01 0.19 7.46 -51.93 -0.39 -0.20 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.33 6.79 4.99 -39.29 -0.20 6.60 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.37 3.54 9.05 45.56 0.41 3.95 16 43 H 0.08 1.29 6.27 -51.92 -0.33 0.97 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -27.65 328.97 -9.62 -37.27 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.26 Total: 9.68 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -1.98 Total: -21.48 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.13 Total: -38.54 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.46 Total: -8.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.65 -9.62 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255148911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.938 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds