Wall clock time and date at job start Tue Mar 31 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47169 * 2 1 4 4 H 1.09000 * 109.47397 * 179.71948 * 3 2 1 5 5 C 1.50704 * 109.46870 * 299.71787 * 3 2 1 6 6 H 1.08001 * 119.99699 * 119.99668 * 5 3 2 7 7 C 1.37872 * 120.00152 * 299.99618 * 5 3 2 8 8 N 1.31521 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00282 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46988 * 59.99983 * 9 7 5 11 11 H 1.48497 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47215 * 300.00450 * 9 7 5 13 13 N 1.46901 * 109.46881 * 59.71614 * 3 2 1 14 14 C 1.46891 * 111.00028 * 85.70855 * 13 3 2 15 15 H 1.09007 * 109.47010 * 323.66554 * 14 13 3 16 16 C 1.52999 * 109.47456 * 83.66353 * 14 13 3 17 17 H 1.09004 * 109.47369 * 300.00304 * 16 14 13 18 18 C 1.52995 * 109.47273 * 179.97438 * 16 14 13 19 19 C 1.52996 * 109.47589 * 300.00340 * 18 16 14 20 20 H 1.09000 * 109.47385 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47091 * 59.99548 * 19 18 16 22 22 C 1.52995 * 109.47273 * 300.00645 * 21 19 18 23 23 H 1.09004 * 109.46989 * 180.02562 * 22 21 19 24 24 C 1.52998 * 109.47122 * 299.99520 * 22 21 19 25 25 C 1.52999 * 109.47026 * 60.00055 * 24 22 21 26 26 O 1.42896 * 109.47326 * 180.02562 * 25 24 22 27 27 C 1.52999 * 109.47289 * 59.99854 * 25 24 22 28 28 C 1.52997 * 109.47284 * 299.99952 * 19 18 16 29 29 H 1.08998 * 109.47461 * 295.65032 * 1 2 3 30 30 H 1.09000 * 109.47167 * 55.65838 * 1 2 3 31 31 H 1.09002 * 109.47095 * 175.65447 * 1 2 3 32 32 H 1.09009 * 109.47434 * 240.00285 * 2 1 3 33 33 H 1.08995 * 109.47802 * 120.00015 * 2 1 3 34 34 H 0.97003 * 119.99914 * 179.97438 * 8 7 5 35 35 H 1.00906 * 110.99657 * 209.66002 * 13 3 2 36 36 H 1.09006 * 109.47465 * 180.02562 * 18 16 14 37 37 H 1.09004 * 109.47159 * 60.00813 * 18 16 14 38 38 H 1.09007 * 109.46847 * 60.00410 * 21 19 18 39 39 H 1.08998 * 109.47465 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.47407 * 180.02562 * 24 22 21 41 41 H 1.09004 * 109.47033 * 300.00141 * 24 22 21 42 42 H 0.96700 * 114.00071 * 180.02562 * 26 25 24 43 43 H 1.09011 * 109.46695 * 59.99714 * 27 25 24 44 44 H 1.08994 * 109.47405 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47756 * 179.97438 * 28 19 18 46 46 H 1.09004 * 109.47261 * 300.00094 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4426 0.0050 5 6 1.5433 2.1509 -1.2340 6 1 0.9219 3.0291 -1.1392 7 6 1.8822 1.6778 -2.4839 8 7 2.6386 0.6081 -2.5993 9 14 1.2672 2.5562 -4.0135 10 1 1.7627 3.9561 -4.0132 11 1 1.7673 1.8538 -5.2225 12 1 -0.2178 2.5568 -4.0206 13 7 1.5447 2.1370 1.1960 14 6 2.4320 1.9067 2.3437 15 1 2.8183 0.8881 2.3057 16 6 3.5977 2.8964 2.2938 17 1 4.1561 2.7538 1.3686 18 6 4.5216 2.6569 3.4896 19 6 3.7376 2.8574 4.7881 20 1 4.3958 2.6864 5.6400 21 6 2.5719 1.8677 4.8380 22 6 1.6481 2.1072 3.6422 23 1 0.8173 1.4024 3.6781 24 6 1.1058 3.5368 3.6949 25 6 2.2714 4.5266 3.6451 26 8 1.7651 5.8619 3.6949 27 6 3.0556 4.3261 2.3467 28 6 3.1954 4.2871 4.8409 29 1 -0.3634 0.4448 0.9264 30 1 -0.3633 0.5797 -0.8485 31 1 -0.3633 -1.0247 -0.0779 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.8767 0.2750 -3.4787 35 1 1.4302 3.1239 1.0197 36 1 5.3519 3.3623 3.4544 37 1 4.9080 1.6384 3.4520 38 1 2.9583 0.8491 4.8004 39 1 2.0136 2.0102 5.7632 40 1 0.4472 3.7073 2.8433 41 1 0.5472 3.6797 4.6200 42 1 2.4502 6.5437 3.6668 43 1 2.3972 4.4967 1.4947 44 1 3.8857 5.0315 2.3109 45 1 2.6365 4.4298 5.7657 46 1 4.0258 4.9923 4.8053 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255148911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:15 Heat of formation + Delta-G solvation = -95.494135 kcal Electronic energy + Delta-G solvation = -24295.437416 eV Core-core repulsion = 21182.199754 eV Total energy + Delta-G solvation = -3113.237662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.57954 -38.10946 -37.06536 -34.72257 -33.57391 -33.08985 -31.73179 -30.66775 -28.07672 -26.85844 -25.77156 -25.07512 -22.55437 -22.30786 -22.05034 -20.63869 -18.75048 -18.20343 -17.66773 -16.91261 -16.15659 -15.80616 -15.59365 -15.42344 -15.15230 -15.00700 -14.68021 -14.34409 -14.29698 -13.92029 -13.63480 -13.54318 -13.33238 -13.16530 -12.94610 -12.82675 -12.63088 -12.43066 -12.22242 -11.94524 -11.84681 -11.75041 -11.66781 -11.53938 -11.37823 -11.18087 -10.98720 -10.78569 -10.63128 -10.48265 -10.29029 -8.83161 -8.09782 -6.21487 1.39577 1.40998 1.48076 2.41198 3.18295 3.21796 3.54626 3.61414 3.78644 3.92488 4.11230 4.13361 4.29661 4.30982 4.34847 4.39145 4.42316 4.51176 4.66461 4.71704 4.77505 4.79608 4.83427 4.90077 4.96765 5.05492 5.10401 5.10674 5.15622 5.19654 5.21461 5.28994 5.32542 5.42911 5.44826 5.54223 5.56546 5.61946 5.66214 5.72260 5.85615 5.93730 6.30270 6.56484 6.87039 6.93702 7.08008 7.47398 8.94841 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.005776 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.340415 B = 4846.159969 C = 5219.955612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.228 3.772 4 H -0.037 1.037 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.098 3.902 15 H 0.051 0.949 16 C -0.110 4.110 17 H 0.037 0.963 18 C -0.102 4.102 19 C -0.077 4.077 20 H 0.095 0.905 21 C -0.108 4.108 22 C -0.064 4.064 23 H 0.070 0.930 24 C -0.093 4.093 25 C 0.141 3.859 26 O -0.576 6.576 27 C -0.131 4.131 28 C -0.126 4.126 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.328 0.672 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.387 0.613 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 5.929 16.382 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.120 3.880 4 H -0.019 1.019 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.012 4.012 15 H 0.070 0.930 16 C -0.130 4.130 17 H 0.055 0.945 18 C -0.140 4.140 19 C -0.095 4.095 20 H 0.113 0.887 21 C -0.146 4.146 22 C -0.083 4.083 23 H 0.088 0.912 24 C -0.130 4.130 25 C 0.101 3.899 26 O -0.383 6.383 27 C -0.170 4.170 28 C -0.164 4.164 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.236 0.764 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.859 4.990 16.419 17.261 hybrid contribution 1.137 0.968 -1.935 2.444 sum 2.996 5.958 14.484 15.946 Atomic orbital electron populations 1.21292 0.96084 0.98190 1.00765 1.21320 0.96176 0.97969 0.98238 1.18816 0.90566 0.91824 0.86834 1.01902 1.21423 1.31255 1.11819 0.91671 0.93116 1.25572 0.95258 0.95634 1.01527 1.70011 1.37630 1.23825 1.24019 0.85751 0.78827 0.78704 0.79200 1.19930 1.21005 1.19798 1.60780 1.49080 1.15464 1.05291 1.21528 0.91032 0.96988 0.91687 0.93026 1.21598 0.97543 0.95573 0.98320 0.94454 1.21516 0.97226 1.01689 0.93596 1.21032 0.96648 0.94333 0.97531 0.88708 1.21603 0.96232 0.99307 0.97411 1.20969 0.97828 0.95894 0.93634 0.91190 1.21319 0.96530 0.93239 1.01943 1.21037 0.93339 0.82197 0.93350 1.86519 1.39052 1.15843 1.96925 1.22113 0.99825 0.96752 0.98265 1.22120 0.99054 0.97307 0.97924 0.92949 0.94768 0.94995 0.92563 0.96367 0.93065 0.85193 0.91123 0.92141 0.91598 0.90081 0.93074 0.91019 0.76364 0.93664 0.90841 0.90390 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.52 71.98 0.69 -4.11 16 2 C -0.10 -4.88 5.57 30.59 0.17 -4.71 16 3 C 0.23 11.55 2.11 44.17 0.09 11.64 16 4 H -0.04 -2.08 7.02 -2.39 -0.02 -2.10 16 5 C -0.52 -28.73 7.27 25.60 0.19 -28.55 16 6 H 0.05 2.78 7.61 -2.91 -0.02 2.76 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 9 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.68 -28.43 4.90 -473.31 -2.32 -30.75 16 14 C 0.10 3.43 1.95 44.92 0.09 3.52 16 15 H 0.05 1.99 7.17 -2.38 -0.02 1.97 16 16 C -0.11 -3.50 2.76 -10.80 -0.03 -3.53 16 17 H 0.04 1.45 7.34 -2.38 -0.02 1.43 16 18 C -0.10 -2.46 5.19 30.59 0.16 -2.30 16 19 C -0.08 -1.50 3.19 -10.80 -0.03 -1.54 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 C -0.11 -2.31 5.19 30.59 0.16 -2.16 16 22 C -0.06 -1.81 2.91 -10.80 -0.03 -1.85 16 23 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 24 C -0.09 -2.61 4.60 30.59 0.14 -2.47 16 25 C 0.14 3.52 1.15 -10.79 -0.01 3.51 16 26 O -0.58 -14.19 12.98 -148.98 -1.93 -16.13 16 27 C -0.13 -3.83 4.56 30.59 0.14 -3.69 16 28 C -0.13 -2.41 4.81 30.60 0.15 -2.26 16 29 H 0.05 2.23 7.74 -2.39 -0.02 2.21 16 30 H 0.03 1.67 7.08 -2.39 -0.02 1.65 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 3.13 6.06 -2.38 -0.01 3.12 16 33 H 0.02 0.83 7.46 -2.39 -0.02 0.81 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.33 14.18 4.99 -89.69 -0.45 13.73 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.71 7.17 -2.39 -0.02 1.69 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.39 6.34 9.05 -74.06 -0.67 5.67 16 43 H 0.04 1.59 6.27 -2.38 -0.01 1.57 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -61.44 328.97 0.17 -61.27 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.15 Total: 29.20 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 2.31 Total: -36.95 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.08 Total: -83.55 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.93 Total: -16.13 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.44 0.17 -61.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255148911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.228 kcal (2) G-P(sol) polarization free energy of solvation -61.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds