Wall clock time and date at job start Tue Mar 31 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47641 * 304.75366 * 3 2 1 5 5 C 1.50701 * 109.47314 * 184.75085 * 3 2 1 6 6 H 1.08002 * 120.00337 * 241.58778 * 5 3 2 7 7 C 1.37879 * 119.99823 * 61.58840 * 5 3 2 8 8 N 1.31515 * 119.99587 * 197.62539 * 7 5 3 9 9 Si 1.86797 * 120.00071 * 17.62890 * 7 5 3 10 10 H 1.48499 * 109.47350 * 92.17351 * 9 7 5 11 11 H 1.48501 * 109.47134 * 212.17562 * 9 7 5 12 12 H 1.48501 * 109.46870 * 332.17264 * 9 7 5 13 13 N 1.46899 * 109.47209 * 64.74995 * 3 2 1 14 14 C 1.46900 * 111.00442 * 215.27987 * 13 3 2 15 15 C 1.53007 * 109.46867 * 306.21946 * 14 13 3 16 16 C 1.53001 * 109.46845 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.46956 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47224 * 300.00014 * 16 15 14 19 19 C 1.53002 * 109.46900 * 60.00193 * 18 16 15 20 20 H 1.08998 * 109.47011 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47266 * 299.99647 * 19 18 16 22 22 C 1.52998 * 109.47266 * 59.99980 * 19 18 16 23 23 C 1.53001 * 109.47177 * 299.99850 * 22 19 18 24 24 O 1.42901 * 109.47455 * 179.97438 * 23 22 19 25 25 C 1.52998 * 109.47141 * 60.00155 * 16 15 14 26 26 C 1.53000 * 109.47137 * 186.22368 * 14 13 3 27 27 H 1.08996 * 109.46952 * 304.61647 * 1 2 3 28 28 H 1.08998 * 109.47030 * 64.61862 * 1 2 3 29 29 H 1.08996 * 109.46992 * 184.62001 * 1 2 3 30 30 H 1.08997 * 109.47201 * 240.00408 * 2 1 3 31 31 H 1.08994 * 109.47800 * 119.99980 * 2 1 3 32 32 H 0.97001 * 119.99486 * 179.97438 * 8 7 5 33 33 H 1.00910 * 111.00023 * 91.32336 * 13 3 2 34 34 H 1.09000 * 109.46539 * 60.00142 * 15 14 13 35 35 H 1.08998 * 109.47332 * 300.00053 * 15 14 13 36 36 H 1.08994 * 109.46887 * 179.97438 * 18 16 15 37 37 H 1.08998 * 109.47100 * 300.00491 * 18 16 15 38 38 H 1.08998 * 109.47593 * 300.00227 * 21 19 18 39 39 H 1.09000 * 109.47197 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.47507 * 180.02562 * 22 19 18 41 41 H 1.09004 * 109.47379 * 59.99583 * 22 19 18 42 42 H 0.96705 * 113.99825 * 299.99802 * 24 23 22 43 43 H 1.08994 * 109.46862 * 179.97438 * 25 16 15 44 44 H 1.09008 * 109.46867 * 59.99903 * 25 16 15 45 45 H 1.08998 * 109.47311 * 59.99795 * 26 14 13 46 46 H 1.09005 * 109.47082 * 299.99500 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9804 -0.8443 5 6 3.5424 1.4442 -0.1177 6 1 4.1455 1.8669 0.6722 7 6 4.1470 0.9060 -1.2338 8 7 5.4227 0.5877 -1.2015 9 14 3.1544 0.6293 -2.7919 10 1 3.2667 1.8223 -3.6689 11 1 3.6781 -0.5621 -3.5073 12 1 1.7294 0.4074 -2.4380 13 7 1.6462 2.1011 1.2526 14 6 1.3315 3.5180 1.0262 15 6 2.5085 4.1955 0.3212 16 6 2.1805 5.6711 0.0848 17 1 3.0187 6.1536 -0.4178 18 6 0.9298 5.7819 -0.7896 19 6 -0.2470 5.1044 -0.0845 20 1 -1.1381 5.1837 -0.7072 21 6 0.0809 3.6288 0.1518 22 6 -0.5012 5.7919 1.2585 23 6 0.7494 5.6811 2.1329 24 8 0.5123 6.3237 3.3871 25 6 1.9263 6.3585 1.4278 26 6 1.0778 4.2051 2.3695 27 1 -0.3633 0.5838 0.8457 28 1 -0.3633 0.4405 -0.9285 29 1 -0.3633 -1.0243 0.0828 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8479 0.2087 -1.9866 33 1 2.3621 1.9976 1.9562 34 1 2.6892 3.7059 -0.6358 35 1 3.3995 4.1162 0.9439 36 1 0.6960 6.8331 -0.9576 37 1 1.1109 5.2921 -1.7463 38 1 0.2620 3.1390 -0.8049 39 1 -0.7573 3.1463 0.6545 40 1 -1.3393 5.3090 1.7610 41 1 -0.7348 6.8432 1.0901 42 1 0.2983 7.2638 3.3131 43 1 1.6931 7.4098 1.2594 44 1 2.8173 6.2796 2.0508 45 1 1.9689 4.1258 2.9923 46 1 0.2394 3.7225 2.8718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:56 Heat of formation + Delta-G solvation = -71.726364 kcal Electronic energy + Delta-G solvation = -24640.895210 eV Core-core repulsion = 21528.688196 eV Total energy + Delta-G solvation = -3112.207014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37585 -37.00069 -35.65905 -32.97301 -32.42464 -31.80749 -30.66442 -28.77227 -26.42804 -25.79075 -25.56040 -22.50805 -21.36105 -21.23671 -20.52706 -19.22903 -17.36322 -16.98210 -16.45183 -15.10316 -14.66438 -14.34081 -14.16536 -14.11312 -13.86329 -13.77214 -13.52677 -13.28088 -12.79920 -12.50622 -12.38098 -12.19009 -12.12709 -11.67205 -11.54097 -11.38270 -11.09561 -10.79559 -10.69577 -10.64338 -10.55825 -10.44094 -10.20387 -10.09630 -9.87023 -9.77913 -9.58714 -9.34153 -9.24774 -9.05759 -8.39643 -7.30432 -6.15187 -4.07882 3.24700 3.35346 3.38853 4.18553 4.39128 4.64758 4.69778 4.92635 5.15991 5.19970 5.28915 5.39918 5.41848 5.44636 5.50653 5.54893 5.66625 5.69135 5.83538 5.89960 6.02271 6.10634 6.11449 6.13324 6.19207 6.20589 6.30839 6.32968 6.36651 6.43551 6.46457 6.54386 6.61387 6.76298 6.78626 6.85418 6.89557 7.10318 7.14786 7.24632 7.43924 7.63354 7.73546 8.10478 8.39961 8.56018 8.94008 9.52953 10.97637 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.006791 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.886278 B = 4122.183651 C = 4363.028827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.188 3.812 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.072 0.928 7 C 0.080 3.920 8 N -0.889 5.889 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.673 5.673 14 C 0.132 3.868 15 C -0.132 4.132 16 C -0.085 4.085 17 H 0.067 0.933 18 C -0.109 4.109 19 C -0.083 4.083 20 H 0.068 0.932 21 C -0.099 4.099 22 C -0.132 4.132 23 C 0.138 3.862 24 O -0.563 6.563 25 C -0.134 4.134 26 C -0.088 4.088 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.262 0.738 33 H 0.337 0.663 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.369 0.631 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 10.925 2.823 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.079 3.921 4 H 0.048 0.952 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.301 5.301 14 C 0.040 3.960 15 C -0.171 4.171 16 C -0.104 4.104 17 H 0.085 0.915 18 C -0.147 4.147 19 C -0.102 4.102 20 H 0.086 0.914 21 C -0.137 4.137 22 C -0.170 4.170 23 C 0.097 3.903 24 O -0.368 6.368 25 C -0.171 4.171 26 C -0.126 4.126 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.216 0.784 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.399 9.996 2.915 15.439 hybrid contribution 0.606 0.770 -1.408 1.715 sum -10.793 10.765 1.507 15.319 Atomic orbital electron populations 1.21756 0.98179 0.99266 1.00869 1.21829 0.93203 0.99282 1.00467 1.19494 0.94129 0.90533 0.87958 0.95242 1.21640 0.90328 1.40338 1.05789 0.91033 1.24907 0.94608 0.94052 0.98791 1.70021 1.11742 1.41328 1.29470 0.87324 0.82447 0.77783 0.84172 1.20908 1.21463 1.17238 1.60844 1.47840 1.09858 1.11585 1.20562 0.93876 0.88997 0.92541 1.22335 0.98338 0.93125 1.03343 1.21078 0.97272 0.97550 0.94539 0.91492 1.21571 0.94835 0.99592 0.98677 1.21048 0.97877 0.95865 0.95436 0.91368 1.21608 0.97642 0.94190 1.00251 1.22160 0.98168 1.00242 0.96432 1.21121 0.93117 0.93497 0.82568 1.86562 1.92769 1.26654 1.30836 1.22177 0.98951 0.98643 0.97369 1.21408 1.02162 0.91500 0.97554 0.91991 0.94657 0.95112 0.93339 0.92915 0.92801 0.84553 0.89493 0.91952 0.92649 0.91729 0.91463 0.91711 0.91393 0.92380 0.78424 0.92537 0.91423 0.91734 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.85 37.16 0.37 -2.26 16 2 C -0.11 -2.35 4.87 -26.73 -0.13 -2.48 16 3 C 0.19 4.12 0.81 -68.86 -0.06 4.06 16 4 H 0.03 0.67 3.98 -51.93 -0.21 0.47 16 5 C -0.54 -14.11 7.10 -34.44 -0.24 -14.35 16 6 H 0.07 2.04 7.76 -52.49 -0.41 1.63 16 7 C 0.08 2.19 5.29 -17.82 -0.09 2.10 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 9 Si 0.86 20.60 25.77 -169.99 -4.38 16.22 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.65 5.48 56.52 0.31 -5.34 16 13 N -0.67 -12.92 5.32 -94.24 -0.50 -13.42 16 14 C 0.13 2.22 0.71 -131.60 -0.09 2.13 16 15 C -0.13 -2.37 3.47 -26.73 -0.09 -2.46 16 16 C -0.09 -1.25 3.19 -90.62 -0.29 -1.54 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -1.46 5.19 -26.73 -0.14 -1.59 16 19 C -0.08 -1.09 3.19 -90.62 -0.29 -1.38 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 C -0.10 -1.56 4.45 -26.73 -0.12 -1.68 16 22 C -0.13 -1.60 4.82 -26.73 -0.13 -1.73 16 23 C 0.14 1.84 1.15 -90.59 -0.10 1.73 16 24 O -0.56 -7.24 12.98 -35.23 -0.46 -7.70 16 25 C -0.13 -1.75 4.81 -26.73 -0.13 -1.88 16 26 C -0.09 -1.38 4.32 -26.71 -0.12 -1.49 16 27 H 0.06 1.10 7.62 -51.93 -0.40 0.71 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.11 4.74 -51.93 -0.25 0.86 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.34 6.76 8.08 -39.29 -0.32 6.44 16 34 H 0.09 1.82 5.95 -51.93 -0.31 1.51 16 35 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.17 6.32 -51.93 -0.33 0.84 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.37 3.19 9.05 45.56 0.41 3.60 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 324.84 15.07 4.90 4.90 Total: -1.00 -28.25 324.84 -8.69 -36.94 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.36 Total: 11.39 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.66 Total: -22.82 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.27 Total: -38.93 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.46 Total: -7.70 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.38 Total: 16.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.25 -8.69 -36.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.785 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds