Wall clock time and date at job start Tue Mar 31 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47641 * 304.75366 * 3 2 1 5 5 C 1.50701 * 109.47314 * 184.75085 * 3 2 1 6 6 H 1.08002 * 120.00337 * 241.58778 * 5 3 2 7 7 C 1.37879 * 119.99823 * 61.58840 * 5 3 2 8 8 N 1.31515 * 119.99587 * 197.62539 * 7 5 3 9 9 Si 1.86797 * 120.00071 * 17.62890 * 7 5 3 10 10 H 1.48499 * 109.47350 * 92.17351 * 9 7 5 11 11 H 1.48501 * 109.47134 * 212.17562 * 9 7 5 12 12 H 1.48501 * 109.46870 * 332.17264 * 9 7 5 13 13 N 1.46899 * 109.47209 * 64.74995 * 3 2 1 14 14 C 1.46900 * 111.00442 * 215.27987 * 13 3 2 15 15 C 1.53007 * 109.46867 * 306.21946 * 14 13 3 16 16 C 1.53001 * 109.46845 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.46956 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47224 * 300.00014 * 16 15 14 19 19 C 1.53002 * 109.46900 * 60.00193 * 18 16 15 20 20 H 1.08998 * 109.47011 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47266 * 299.99647 * 19 18 16 22 22 C 1.52998 * 109.47266 * 59.99980 * 19 18 16 23 23 C 1.53001 * 109.47177 * 299.99850 * 22 19 18 24 24 O 1.42901 * 109.47455 * 179.97438 * 23 22 19 25 25 C 1.52998 * 109.47141 * 60.00155 * 16 15 14 26 26 C 1.53000 * 109.47137 * 186.22368 * 14 13 3 27 27 H 1.08996 * 109.46952 * 304.61647 * 1 2 3 28 28 H 1.08998 * 109.47030 * 64.61862 * 1 2 3 29 29 H 1.08996 * 109.46992 * 184.62001 * 1 2 3 30 30 H 1.08997 * 109.47201 * 240.00408 * 2 1 3 31 31 H 1.08994 * 109.47800 * 119.99980 * 2 1 3 32 32 H 0.97001 * 119.99486 * 179.97438 * 8 7 5 33 33 H 1.00910 * 111.00023 * 91.32336 * 13 3 2 34 34 H 1.09000 * 109.46539 * 60.00142 * 15 14 13 35 35 H 1.08998 * 109.47332 * 300.00053 * 15 14 13 36 36 H 1.08994 * 109.46887 * 179.97438 * 18 16 15 37 37 H 1.08998 * 109.47100 * 300.00491 * 18 16 15 38 38 H 1.08998 * 109.47593 * 300.00227 * 21 19 18 39 39 H 1.09000 * 109.47197 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.47507 * 180.02562 * 22 19 18 41 41 H 1.09004 * 109.47379 * 59.99583 * 22 19 18 42 42 H 0.96705 * 113.99825 * 299.99802 * 24 23 22 43 43 H 1.08994 * 109.46862 * 179.97438 * 25 16 15 44 44 H 1.09008 * 109.46867 * 59.99903 * 25 16 15 45 45 H 1.08998 * 109.47311 * 59.99795 * 26 14 13 46 46 H 1.09005 * 109.47082 * 299.99500 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9804 -0.8443 5 6 3.5424 1.4442 -0.1177 6 1 4.1455 1.8669 0.6722 7 6 4.1470 0.9060 -1.2338 8 7 5.4227 0.5877 -1.2015 9 14 3.1544 0.6293 -2.7919 10 1 3.2667 1.8223 -3.6689 11 1 3.6781 -0.5621 -3.5073 12 1 1.7294 0.4074 -2.4380 13 7 1.6462 2.1011 1.2526 14 6 1.3315 3.5180 1.0262 15 6 2.5085 4.1955 0.3212 16 6 2.1805 5.6711 0.0848 17 1 3.0187 6.1536 -0.4178 18 6 0.9298 5.7819 -0.7896 19 6 -0.2470 5.1044 -0.0845 20 1 -1.1381 5.1837 -0.7072 21 6 0.0809 3.6288 0.1518 22 6 -0.5012 5.7919 1.2585 23 6 0.7494 5.6811 2.1329 24 8 0.5123 6.3237 3.3871 25 6 1.9263 6.3585 1.4278 26 6 1.0778 4.2051 2.3695 27 1 -0.3633 0.5838 0.8457 28 1 -0.3633 0.4405 -0.9285 29 1 -0.3633 -1.0243 0.0828 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8479 0.2087 -1.9866 33 1 2.3621 1.9976 1.9562 34 1 2.6892 3.7059 -0.6358 35 1 3.3995 4.1162 0.9439 36 1 0.6960 6.8331 -0.9576 37 1 1.1109 5.2921 -1.7463 38 1 0.2620 3.1390 -0.8049 39 1 -0.7573 3.1463 0.6545 40 1 -1.3393 5.3090 1.7610 41 1 -0.7348 6.8432 1.0901 42 1 0.2983 7.2638 3.3131 43 1 1.6931 7.4098 1.2594 44 1 2.8173 6.2796 2.0508 45 1 1.9689 4.1258 2.9923 46 1 0.2394 3.7225 2.8718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155281.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:55 Heat of formation + Delta-G solvation = -91.639083 kcal Electronic energy + Delta-G solvation = -24641.758690 eV Core-core repulsion = 21528.688196 eV Total energy + Delta-G solvation = -3113.070494 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.57773 -38.41696 -36.92963 -34.65745 -33.75134 -33.49038 -31.82573 -30.26585 -28.24035 -26.96141 -26.77962 -24.31572 -22.57806 -22.43262 -21.85034 -20.82136 -19.00956 -18.43720 -17.71133 -16.90882 -16.05898 -15.55494 -15.40050 -15.31241 -15.24912 -15.12460 -14.85651 -14.74052 -14.58055 -14.00491 -13.59843 -13.55558 -13.38751 -13.23086 -13.13381 -12.85526 -12.59480 -12.52747 -12.14597 -11.93123 -11.81277 -11.71907 -11.57291 -11.50953 -11.37719 -11.28947 -11.11950 -10.84809 -10.77509 -10.48402 -10.32550 -8.97233 -8.31708 -6.26744 1.29780 1.34931 1.44121 2.33758 3.01921 3.12499 3.45329 3.59854 3.80555 4.05503 4.13046 4.17914 4.28330 4.29448 4.33648 4.38352 4.43750 4.46278 4.51090 4.60650 4.72789 4.77119 4.79380 4.87736 4.95114 4.99803 5.06591 5.09859 5.14977 5.17429 5.20841 5.23493 5.30109 5.36235 5.39711 5.42931 5.52078 5.52976 5.58093 5.63573 5.72163 5.77682 6.17273 6.49386 6.71397 6.87722 6.98182 7.37364 8.84729 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.006791 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.886278 B = 4122.183651 C = 4363.028827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.199 3.801 4 H 0.031 0.969 5 C -0.531 4.531 6 H 0.030 0.970 7 C 0.024 3.976 8 N -0.941 5.941 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.224 1.224 13 N -0.667 5.667 14 C 0.131 3.869 15 C -0.126 4.126 16 C -0.085 4.085 17 H 0.064 0.936 18 C -0.107 4.107 19 C -0.080 4.080 20 H 0.093 0.907 21 C -0.097 4.097 22 C -0.125 4.125 23 C 0.143 3.857 24 O -0.574 6.574 25 C -0.128 4.128 26 C -0.087 4.087 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.262 0.738 33 H 0.327 0.673 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.659 12.942 2.334 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.151 4.151 3 C 0.089 3.911 4 H 0.048 0.952 5 C -0.570 4.570 6 H 0.048 0.952 7 C -0.175 4.175 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.146 1.146 13 N -0.295 5.295 14 C 0.039 3.961 15 C -0.165 4.165 16 C -0.104 4.104 17 H 0.082 0.918 18 C -0.144 4.144 19 C -0.099 4.099 20 H 0.111 0.889 21 C -0.135 4.135 22 C -0.163 4.163 23 C 0.102 3.898 24 O -0.383 6.383 25 C -0.166 4.166 26 C -0.125 4.125 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.241 0.759 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.073 12.040 2.437 19.444 hybrid contribution 1.841 0.167 -1.123 2.163 sum -13.232 12.207 1.314 18.051 Atomic orbital electron populations 1.21638 0.95049 1.00843 1.01443 1.21786 0.95979 0.98038 0.99319 1.19308 0.91031 0.91532 0.89194 0.95151 1.21891 0.92534 1.38402 1.04186 0.95173 1.25690 0.95492 0.94304 1.02006 1.70157 1.13814 1.43669 1.30385 0.86371 0.82254 0.77448 0.80019 1.20638 1.21685 1.14629 1.60895 1.46698 1.11874 1.09985 1.20682 0.94207 0.87338 0.93828 1.22168 0.97643 0.96097 1.00629 1.21062 0.98437 0.94719 0.96215 0.91776 1.21576 0.93792 1.01499 0.97549 1.21068 0.98580 0.93542 0.96661 0.88886 1.21595 0.96551 0.96695 0.98681 1.22118 0.97025 1.02143 0.94975 1.20954 0.94060 0.91565 0.83211 1.86520 1.92839 1.28565 1.30332 1.22136 0.98396 1.00309 0.95774 1.21342 1.01187 0.93896 0.96046 0.91477 0.93977 0.93054 0.94650 0.94036 0.92907 0.85686 0.93171 0.95373 0.89447 0.92956 0.93334 0.91171 0.91035 0.89146 0.75918 0.89172 0.93128 0.93732 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.85 71.98 0.71 -3.83 16 2 C -0.11 -4.81 4.87 30.59 0.15 -4.66 16 3 C 0.20 8.90 0.81 44.17 0.04 8.94 16 4 H 0.03 1.39 3.98 -2.39 -0.01 1.38 16 5 C -0.53 -29.16 7.10 25.60 0.18 -28.98 16 6 H 0.03 1.86 7.76 -2.91 -0.02 1.84 16 7 C 0.02 1.35 5.29 84.66 0.45 1.79 16 8 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 9 Si 0.91 43.34 25.77 68.60 1.77 45.11 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.22 -9.61 5.48 99.48 0.55 -9.07 16 13 N -0.67 -26.34 5.32 -452.08 -2.41 -28.75 16 14 C 0.13 4.43 0.71 3.53 0.00 4.43 16 15 C -0.13 -4.71 3.47 30.60 0.11 -4.60 16 16 C -0.09 -2.40 3.19 -10.79 -0.03 -2.44 16 17 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 18 C -0.11 -2.50 5.19 30.60 0.16 -2.34 16 19 C -0.08 -1.78 3.19 -10.79 -0.03 -1.81 16 20 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 21 C -0.10 -2.87 4.45 30.59 0.14 -2.73 16 22 C -0.13 -2.43 4.82 30.59 0.15 -2.28 16 23 C 0.14 3.42 1.15 -10.78 -0.01 3.41 16 24 O -0.57 -12.87 12.98 -148.98 -1.93 -14.81 16 25 C -0.13 -3.07 4.81 30.59 0.15 -2.93 16 26 C -0.09 -2.66 4.32 30.61 0.13 -2.52 16 27 H 0.07 2.23 7.62 -2.39 -0.02 2.21 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.58 4.74 -2.39 -0.01 1.57 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.33 13.95 8.08 -89.69 -0.72 13.22 16 34 H 0.05 2.21 5.95 -2.39 -0.01 2.19 16 35 H 0.03 1.19 8.09 -2.39 -0.02 1.17 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.61 6.32 -2.39 -0.02 1.60 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.39 5.00 9.05 -74.05 -0.67 4.33 16 43 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -64.77 324.84 -0.59 -65.35 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -0.59 Total: 31.80 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 2.27 Total: -40.57 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.11 Total: -86.89 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.93 Total: -14.81 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.77 Total: 45.11 kcal Total: -64.77 -0.59 -65.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155281.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.287 kcal (2) G-P(sol) polarization free energy of solvation -64.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds