Wall clock time and date at job start Tue Mar 31 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46793 * 2 1 4 4 H 1.08997 * 109.47294 * 315.42347 * 3 2 1 5 5 C 1.50704 * 109.46856 * 195.42696 * 3 2 1 6 6 H 1.08003 * 120.00233 * 244.74508 * 5 3 2 7 7 C 1.37876 * 120.00019 * 64.74555 * 5 3 2 8 8 N 1.31523 * 119.99978 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 120.00097 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47013 * 270.00055 * 9 7 5 11 11 H 1.48502 * 109.46965 * 29.99921 * 9 7 5 12 12 H 1.48497 * 109.47122 * 150.00292 * 9 7 5 13 13 N 1.46894 * 109.47213 * 75.43057 * 3 2 1 14 14 C 1.46875 * 111.00086 * 334.57936 * 13 3 2 15 15 C 1.53285 * 109.42545 * 170.84821 * 14 13 3 16 16 C 1.51434 * 108.29297 * 54.16665 * 15 14 13 17 17 O 1.20763 * 121.14898 * 130.61861 * 16 15 14 18 18 C 1.51492 * 117.70801 * 310.59663 * 16 15 14 19 19 H 1.09005 * 109.70550 * 168.17104 * 18 16 15 20 20 C 1.52997 * 109.70522 * 288.78809 * 18 16 15 21 21 C 1.46442 * 111.00129 * 209.74991 * 13 3 2 22 22 C 1.53980 * 109.91857 * 67.61743 * 21 13 3 23 23 C 1.54957 * 104.13314 * 217.07195 * 22 21 13 24 24 C 1.54913 * 102.77975 * 37.70817 * 23 22 21 25 25 C 1.53604 * 110.11103 * 310.12127 * 21 13 3 26 26 H 1.09003 * 109.46658 * 281.19692 * 1 2 3 27 27 H 1.08990 * 109.47342 * 41.19552 * 1 2 3 28 28 H 1.09002 * 109.46811 * 161.20261 * 1 2 3 29 29 H 1.09003 * 109.47164 * 240.00410 * 2 1 3 30 30 H 1.09001 * 109.48030 * 120.00083 * 2 1 3 31 31 H 0.97001 * 119.99596 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.48149 * 290.83994 * 14 13 3 33 33 H 1.09008 * 109.47523 * 50.86400 * 14 13 3 34 34 H 1.08996 * 109.70125 * 294.46546 * 15 14 13 35 35 H 1.09004 * 109.73026 * 173.88402 * 15 14 13 36 36 H 1.09004 * 109.46946 * 178.81427 * 20 18 16 37 37 H 1.08999 * 109.47003 * 298.81056 * 20 18 16 38 38 H 1.08994 * 109.47256 * 58.81582 * 20 18 16 39 39 H 1.09004 * 110.49914 * 335.73760 * 22 21 13 40 40 H 1.09001 * 110.49594 * 98.40722 * 22 21 13 41 41 H 1.08998 * 110.74975 * 279.38191 * 23 22 21 42 42 H 1.09004 * 110.74901 * 156.02566 * 23 22 21 43 43 H 1.09001 * 110.48220 * 203.54151 * 24 23 22 44 44 H 1.08998 * 110.48939 * 80.90421 * 24 23 22 45 45 H 1.09002 * 110.05055 * 238.55540 * 25 21 13 46 46 H 1.09002 * 110.05218 * 0.04094 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4709 2.0291 -0.7212 5 6 3.4987 1.4597 -0.3780 6 1 4.2381 1.7882 0.3374 7 6 3.8894 1.0558 -1.6370 8 7 5.1624 1.0712 -1.9671 9 14 2.6106 0.4868 -2.8742 10 1 2.4079 -0.9779 -2.7383 11 1 1.3277 1.1899 -2.6189 12 1 3.0797 0.7962 -4.2487 13 7 1.8746 2.0204 1.3404 14 6 0.7913 1.3510 2.0722 15 6 0.7980 1.8177 3.5323 16 6 0.7358 3.3307 3.5479 17 8 -0.0614 3.9159 4.2411 18 6 1.7082 4.0849 2.6645 19 1 1.4192 5.1346 2.6123 20 6 3.1227 3.9662 3.2355 21 6 1.6633 3.4675 1.2657 22 6 0.3018 3.7658 0.6113 23 6 0.5625 5.0308 -0.2449 24 6 1.9893 4.7838 -0.7956 25 6 2.7367 4.1128 0.3764 26 1 -0.3633 0.1996 1.0082 27 1 -0.3633 0.7732 -0.6768 28 1 -0.3633 -0.9729 -0.3311 29 1 1.8933 -0.5138 -0.8900 30 1 1.8935 -0.5138 0.8899 31 1 5.4373 0.7867 -2.8527 32 1 -0.1657 1.6021 1.6147 33 1 0.9401 0.2718 2.0348 34 1 1.7129 1.4826 4.0209 35 1 -0.0678 1.4089 4.0533 36 1 3.8221 4.4923 2.5858 37 1 3.1504 4.4072 4.2320 38 1 3.4032 2.9147 3.2956 39 1 -0.0081 2.9339 -0.0213 40 1 -0.4513 3.9687 1.3727 41 1 0.5373 5.9278 0.3738 42 1 -0.1587 5.1014 -1.0591 43 1 2.4647 5.7282 -1.0604 44 1 1.9555 4.1178 -1.6577 45 1 3.2915 4.8606 0.9431 46 1 3.4168 3.3496 -0.0021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:39 Heat of formation + Delta-G solvation = -11.914202 kcal Electronic energy + Delta-G solvation = -25014.073295 eV Core-core repulsion = 21904.459931 eV Total energy + Delta-G solvation = -3109.613364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.85442 -38.37660 -36.10129 -33.90273 -32.47121 -31.23821 -30.53461 -28.49436 -27.17625 -26.09400 -23.89597 -22.89462 -22.27519 -20.82046 -20.05363 -19.09146 -17.31533 -16.82389 -16.22082 -15.81598 -15.12784 -15.00872 -14.47632 -14.34570 -14.08628 -13.93544 -12.92650 -12.85298 -12.81201 -12.56373 -12.30944 -12.10109 -11.91535 -11.68619 -11.52865 -11.35624 -11.17571 -11.03709 -10.87538 -10.68524 -10.59571 -10.42791 -10.27457 -10.11111 -10.04787 -9.90923 -9.71946 -9.43718 -9.13876 -8.93147 -8.54236 -7.29119 -6.13424 -4.07080 2.19078 3.20114 3.31771 3.33014 4.32174 4.33454 4.52174 4.96870 5.00927 5.08879 5.14749 5.29018 5.35740 5.44072 5.52633 5.61945 5.72389 5.76938 5.78128 5.92337 5.97087 6.01190 6.02885 6.09031 6.10380 6.16012 6.20451 6.21411 6.23243 6.29672 6.43688 6.47644 6.52842 6.61306 6.67408 6.70075 6.72426 6.79206 6.98655 7.11869 7.53955 7.64620 7.69082 7.89893 8.09510 8.60835 8.95991 9.48613 10.98128 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.008223 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.041111 B = 3404.115484 C = 3764.522247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.139 4.139 3 C 0.186 3.814 4 H 0.021 0.979 5 C -0.490 4.490 6 H 0.089 0.911 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.295 1.295 13 N -0.510 5.510 14 C 0.043 3.957 15 C -0.170 4.170 16 C 0.371 3.629 17 O -0.475 6.475 18 C -0.119 4.119 19 H 0.086 0.914 20 C -0.133 4.133 21 C 0.135 3.865 22 C -0.158 4.158 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 3.003 5.687 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.177 4.177 3 C 0.079 3.921 4 H 0.038 0.962 5 C -0.528 4.528 6 H 0.107 0.893 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.189 1.189 12 H -0.222 1.222 13 N -0.233 5.233 14 C -0.085 4.085 15 C -0.208 4.208 16 C 0.248 3.752 17 O -0.350 6.350 18 C -0.139 4.139 19 H 0.104 0.896 20 C -0.191 4.191 21 C 0.044 3.956 22 C -0.197 4.197 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.188 4.188 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.315 3.180 6.159 10.077 hybrid contribution -1.488 -0.288 -1.317 2.008 sum -8.804 2.892 4.842 10.455 Atomic orbital electron populations 1.22710 0.98330 1.00622 1.02446 1.22255 0.92895 1.00576 1.01977 1.19896 0.97660 0.89552 0.84972 0.96203 1.20885 0.90552 1.42707 0.98681 0.89307 1.24908 0.94771 0.95395 0.97941 1.69873 1.14711 1.47726 1.20850 0.87098 0.82808 0.79316 0.80864 1.20522 1.18909 1.22242 1.61857 1.40559 1.01102 1.19816 1.22807 0.93996 1.00749 0.90966 1.22481 1.04238 0.94166 0.99895 1.25115 0.80236 0.92374 0.77497 1.90344 1.34964 1.73190 1.36527 1.21998 0.96893 0.99610 0.95390 0.89587 1.21684 0.93856 1.04151 0.99363 1.21269 0.93700 0.88738 0.91899 1.23142 0.98379 0.98853 0.99343 1.22448 0.97765 0.97123 0.98541 1.22323 0.94391 0.99750 0.99197 1.23053 0.98946 1.01967 0.94815 0.90988 0.93484 0.94049 0.92242 0.91245 0.92606 0.94237 0.88380 0.87730 0.90027 0.90901 0.93786 0.90360 0.90898 0.92920 0.92162 0.92572 0.92592 0.91601 0.92679 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.78 37.16 0.33 -2.66 16 2 C -0.14 -2.68 4.32 -26.73 -0.12 -2.80 16 3 C 0.19 3.81 0.73 -68.86 -0.05 3.76 16 4 H 0.02 0.44 3.93 -51.93 -0.20 0.24 16 5 C -0.49 -12.02 6.62 -34.44 -0.23 -12.24 16 6 H 0.09 2.40 7.47 -52.48 -0.39 2.01 16 7 C 0.07 1.89 5.44 -17.82 -0.10 1.79 16 8 N -0.89 -25.23 13.96 55.43 0.77 -24.46 16 9 Si 0.87 20.32 24.67 -169.99 -4.19 16.13 16 10 H -0.28 -6.45 6.83 56.52 0.39 -6.06 16 11 H -0.26 -5.94 6.41 56.52 0.36 -5.57 16 12 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.51 -9.06 3.90 -211.71 -0.83 -9.89 16 14 C 0.04 0.66 3.24 -3.69 -0.01 0.64 16 15 C -0.17 -2.37 6.12 -27.37 -0.17 -2.54 16 16 C 0.37 5.87 5.14 -28.28 -0.15 5.72 16 17 O -0.48 -8.64 17.91 6.00 0.11 -8.53 16 18 C -0.12 -1.84 2.10 -91.40 -0.19 -2.03 16 19 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 20 C -0.13 -1.92 8.72 37.16 0.32 -1.60 16 21 C 0.13 2.25 0.23 -131.04 -0.03 2.22 16 22 C -0.16 -2.57 4.07 -25.19 -0.10 -2.67 16 23 C -0.12 -1.83 6.91 -24.69 -0.17 -2.00 16 24 C -0.12 -2.00 6.52 -25.02 -0.16 -2.16 16 25 C -0.15 -2.71 5.03 -25.71 -0.13 -2.84 16 26 H 0.07 1.03 4.24 -51.93 -0.22 0.81 16 27 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.27 4.11 -51.93 -0.21 1.06 16 30 H 0.07 1.28 6.70 -51.93 -0.35 0.93 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.04 0.61 4.75 -51.93 -0.25 0.36 16 33 H 0.10 1.46 4.65 -51.92 -0.24 1.22 16 34 H 0.10 1.37 7.90 -51.93 -0.41 0.96 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.05 6.17 -51.93 -0.32 0.73 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.19 7.48 -51.93 -0.39 0.80 16 39 H 0.07 1.27 5.53 -51.93 -0.29 0.98 16 40 H 0.05 0.84 7.10 -51.93 -0.37 0.47 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.23 7.95 -51.93 -0.41 0.82 16 45 H 0.05 0.91 5.93 -51.93 -0.31 0.60 16 46 H 0.15 3.22 3.61 -51.93 -0.19 3.03 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -27.03 314.92 -7.42 -34.45 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.08 Total: 6.97 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.95 Total: -19.41 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.05 Total: -34.35 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.11 Total: -8.53 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.19 Total: 16.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.03 -7.42 -34.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.537 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds