Wall clock time and date at job start Tue Mar 31 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 H 1.09000 * 109.46812 * 306.01812 * 3 2 1 5 5 C 1.50694 * 109.47561 * 186.01679 * 3 2 1 6 6 H 1.08004 * 120.00081 * 273.12627 * 5 3 2 7 7 C 1.37872 * 120.00267 * 93.12319 * 5 3 2 8 8 N 1.31514 * 120.00050 * 352.68062 * 7 5 3 9 9 Si 1.86803 * 120.00239 * 172.67987 * 7 5 3 10 10 H 1.48496 * 109.46986 * 270.00366 * 9 7 5 11 11 H 1.48496 * 109.46937 * 30.00200 * 9 7 5 12 12 H 1.48499 * 109.47042 * 149.99906 * 9 7 5 13 13 N 1.46904 * 109.46941 * 66.01274 * 3 2 1 14 14 C 1.46882 * 110.99787 * 73.58225 * 13 3 2 15 15 C 1.53284 * 109.42317 * 189.13336 * 14 13 3 16 16 C 1.51442 * 108.31639 * 305.86993 * 15 14 13 17 17 O 1.20757 * 121.14837 * 229.39206 * 16 15 14 18 18 C 1.51499 * 117.70006 * 49.36639 * 16 15 14 19 19 H 1.08999 * 109.70724 * 191.81838 * 18 16 15 20 20 C 1.53005 * 109.70770 * 71.24185 * 18 16 15 21 21 C 1.46448 * 111.00043 * 198.37772 * 13 3 2 22 22 C 1.53978 * 109.90939 * 50.20085 * 21 13 3 23 23 C 1.54950 * 104.13024 * 217.07310 * 22 21 13 24 24 C 1.54908 * 102.78309 * 37.69923 * 23 22 21 25 25 C 1.53592 * 110.11747 * 292.69876 * 21 13 3 26 26 H 1.08997 * 109.47402 * 299.99873 * 1 2 3 27 27 H 1.09004 * 109.46801 * 60.00187 * 1 2 3 28 28 H 1.08998 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47402 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47540 * 119.99869 * 2 1 3 31 31 H 0.97009 * 119.99720 * 355.34242 * 8 7 5 32 32 H 1.09005 * 109.47309 * 309.11636 * 14 13 3 33 33 H 1.08998 * 109.47746 * 69.13335 * 14 13 3 34 34 H 1.09001 * 109.69670 * 65.57388 * 15 14 13 35 35 H 1.09002 * 109.69638 * 186.16359 * 15 14 13 36 36 H 1.09001 * 109.47317 * 52.42368 * 20 18 16 37 37 H 1.09000 * 109.47271 * 172.42694 * 20 18 16 38 38 H 1.09002 * 109.46718 * 292.42517 * 20 18 16 39 39 H 1.09005 * 110.49917 * 335.73471 * 22 21 13 40 40 H 1.09004 * 110.49921 * 98.40664 * 22 21 13 41 41 H 1.09009 * 110.74851 * 279.37775 * 23 22 21 42 42 H 1.09000 * 110.90838 * 156.10273 * 23 22 21 43 43 H 1.08999 * 110.48524 * 203.53900 * 24 23 22 44 44 H 1.09008 * 110.59669 * 80.95893 * 24 23 22 45 45 H 1.08998 * 110.05206 * 238.53752 * 25 21 13 46 46 H 1.09000 * 110.05690 * 0.03522 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 3.5396 1.4452 -0.1489 6 1 4.1692 1.3626 0.7247 7 6 4.1079 1.5531 -1.4004 8 7 3.3488 1.5088 -2.4734 9 14 5.9563 1.7623 -1.5721 10 1 6.2933 3.2085 -1.5669 11 1 6.6379 1.0912 -0.4363 12 1 6.4068 1.1535 -2.8494 13 7 1.6724 2.0918 1.2654 14 6 2.5024 1.5969 2.3716 15 6 1.9451 2.1195 3.7004 16 6 1.8374 3.6274 3.6112 17 8 2.2813 4.3379 4.4810 18 6 1.1542 4.2138 2.3928 19 1 1.3302 5.2888 2.3544 20 6 -0.3495 3.9396 2.4625 21 6 1.7433 3.5498 1.1472 22 6 0.9700 4.0128 -0.1013 23 6 1.8141 5.1886 -0.6546 24 6 3.2675 4.7148 -0.4041 25 6 3.2014 3.9943 0.9593 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.3986 1.3327 -2.3883 32 1 2.4899 0.5069 2.3757 33 1 3.5262 1.9482 2.2432 34 1 0.9590 1.6908 3.8793 35 1 2.6178 1.8467 4.5136 36 1 -0.7365 4.2781 3.4236 37 1 -0.8542 4.4753 1.6585 38 1 -0.5290 2.8698 2.3549 39 1 0.9105 3.2078 -0.8338 40 1 -0.0279 4.3552 0.1729 41 1 1.6066 6.1059 -0.1034 42 1 1.6323 5.3305 -1.7199 43 1 3.9434 5.5683 -0.3521 44 1 3.5858 4.0243 -1.1853 45 1 3.4895 4.6782 1.7577 46 1 3.8595 3.1254 0.9552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:47 Heat of formation + Delta-G solvation = -34.447446 kcal Electronic energy + Delta-G solvation = -25143.630418 eV Core-core repulsion = 22033.039939 eV Total energy + Delta-G solvation = -3110.590479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63377 -38.24207 -35.47137 -33.98114 -32.03921 -31.71163 -29.97624 -28.14326 -26.67387 -25.36354 -23.92120 -23.28000 -22.54440 -20.17439 -19.77261 -19.13037 -17.58776 -16.42645 -16.16364 -15.53640 -15.05784 -14.73844 -14.16007 -13.96174 -13.78511 -13.61602 -13.39269 -12.83958 -12.64987 -12.52212 -12.24167 -12.01509 -11.83722 -11.58720 -11.25987 -11.02484 -10.87518 -10.74612 -10.67571 -10.66719 -10.43205 -10.27335 -10.22952 -10.11781 -9.99994 -9.83855 -9.54029 -9.37538 -8.96001 -8.65724 -8.38008 -7.11062 -6.41040 -4.12676 2.29027 3.35959 3.38349 3.52072 4.40872 4.42796 4.72796 5.07617 5.11482 5.25560 5.29352 5.49608 5.55116 5.63321 5.64062 5.77063 5.84172 6.00170 6.03136 6.04794 6.13570 6.16072 6.21904 6.26330 6.32532 6.35108 6.41414 6.45981 6.51317 6.56284 6.60559 6.62891 6.77428 6.80369 6.82892 6.89972 7.08234 7.21050 7.26703 7.32810 7.44993 7.77030 7.93642 8.03464 8.28769 8.44724 8.74914 9.53861 10.93018 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.008757 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.125798 B = 3196.697058 C = 3500.783907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.185 3.815 4 H 0.065 0.935 5 C -0.614 4.614 6 H 0.055 0.945 7 C 0.036 3.964 8 N -0.903 5.903 9 Si 1.046 2.954 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.521 5.521 14 C 0.066 3.934 15 C -0.167 4.167 16 C 0.374 3.626 17 O -0.476 6.476 18 C -0.122 4.122 19 H 0.084 0.916 20 C -0.133 4.133 21 C 0.136 3.864 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.163 4.163 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.272 0.728 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.033 0.967 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 2.310 5.834 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.653 4.653 6 H 0.073 0.927 7 C -0.170 4.170 8 N -0.538 5.538 9 Si 0.875 3.125 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.211 1.211 13 N -0.244 5.244 14 C -0.063 4.063 15 C -0.206 4.206 16 C 0.251 3.749 17 O -0.351 6.351 18 C -0.142 4.142 19 H 0.103 0.897 20 C -0.190 4.190 21 C 0.046 3.954 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.202 4.202 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.572 2.775 5.284 7.518 hybrid contribution -0.232 -0.034 0.937 0.966 sum -4.804 2.741 6.221 8.324 Atomic orbital electron populations 1.21751 0.98176 0.98925 1.01126 1.21660 0.93016 0.99522 1.00118 1.19733 0.94532 0.90433 0.87407 0.91721 1.22381 0.92231 1.55424 0.95218 0.92705 1.25453 1.05647 0.93643 0.92266 1.70778 1.07805 1.44692 1.30569 0.83871 0.75764 0.77034 0.75789 1.21192 1.21553 1.21129 1.62184 1.52729 1.03099 1.06397 1.21927 0.96212 1.00048 0.88098 1.22459 1.03591 0.94173 1.00346 1.25029 0.73180 0.91841 0.84845 1.90336 1.39400 1.65028 1.40315 1.22027 0.97075 1.00436 0.94624 0.89729 1.21705 0.92780 1.03753 1.00796 1.21056 0.93714 0.88618 0.92053 1.22746 0.97475 0.98524 0.97018 1.22440 0.96526 0.97193 0.99760 1.22292 0.95206 0.98990 0.98958 1.23182 0.98833 1.02120 0.96015 0.92539 0.94169 0.95297 0.93001 0.93911 0.91684 0.90349 0.93156 0.88457 0.90213 0.93716 0.91633 0.90395 0.89241 0.92025 0.93005 0.92374 0.93894 0.89364 0.94861 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.81 37.16 0.36 -2.05 16 2 C -0.10 -2.07 5.42 -26.73 -0.14 -2.21 16 3 C 0.18 3.80 1.14 -68.86 -0.08 3.73 16 4 H 0.07 1.47 3.52 -51.93 -0.18 1.28 16 5 C -0.61 -14.24 4.76 -34.44 -0.16 -14.40 16 6 H 0.05 1.32 5.26 -52.48 -0.28 1.04 16 7 C 0.04 0.90 3.96 -17.82 -0.07 0.83 16 8 N -0.90 -23.88 13.55 55.43 0.75 -23.12 16 9 Si 1.05 23.38 29.91 -169.99 -5.08 18.29 16 10 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.52 -9.31 3.32 -211.72 -0.70 -10.02 16 14 C 0.07 1.14 4.33 -3.69 -0.02 1.13 16 15 C -0.17 -2.55 6.23 -27.37 -0.17 -2.72 16 16 C 0.37 6.35 5.46 -28.28 -0.15 6.20 16 17 O -0.48 -9.29 17.91 6.00 0.11 -9.18 16 18 C -0.12 -1.94 2.06 -91.40 -0.19 -2.13 16 19 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 20 C -0.13 -1.80 8.52 37.16 0.32 -1.48 16 21 C 0.14 2.38 0.24 -131.05 -0.03 2.35 16 22 C -0.12 -2.07 5.58 -25.19 -0.14 -2.21 16 23 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 24 C -0.12 -2.26 6.74 -25.02 -0.17 -2.43 16 25 C -0.16 -3.17 4.39 -25.72 -0.11 -3.28 16 26 H 0.06 0.92 7.78 -51.93 -0.40 0.52 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.83 6.52 -51.93 -0.34 0.49 16 31 H 0.27 7.15 6.80 -40.82 -0.28 6.87 16 32 H 0.08 1.37 6.44 -51.93 -0.33 1.03 16 33 H 0.05 0.98 4.81 -51.93 -0.25 0.73 16 34 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.06 0.82 6.26 -51.93 -0.33 0.50 16 38 H 0.08 1.08 7.66 -51.93 -0.40 0.68 16 39 H 0.09 1.75 4.98 -51.93 -0.26 1.49 16 40 H 0.06 0.93 5.52 -51.93 -0.29 0.65 16 41 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.98 6.36 -51.92 -0.33 1.65 16 45 H 0.03 0.64 7.38 -51.93 -0.38 0.25 16 46 H 0.12 2.52 3.32 -51.93 -0.17 2.35 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -25.21 325.55 -8.19 -33.40 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.24 Total: 6.65 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.93 Total: -20.93 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.05 Total: -33.14 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.11 Total: -9.18 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.08 Total: 18.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.21 -8.19 -33.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.044 kcal (2) G-P(sol) polarization free energy of solvation -25.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds