Wall clock time and date at job start Tue Mar 31 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47217 * 2 1 4 4 H 1.09000 * 109.46812 * 306.01812 * 3 2 1 5 5 C 1.50694 * 109.47561 * 186.01679 * 3 2 1 6 6 H 1.08004 * 120.00081 * 273.12627 * 5 3 2 7 7 C 1.37872 * 120.00267 * 93.12319 * 5 3 2 8 8 N 1.31514 * 120.00050 * 352.68062 * 7 5 3 9 9 Si 1.86803 * 120.00239 * 172.67987 * 7 5 3 10 10 H 1.48496 * 109.46986 * 270.00366 * 9 7 5 11 11 H 1.48496 * 109.46937 * 30.00200 * 9 7 5 12 12 H 1.48499 * 109.47042 * 149.99906 * 9 7 5 13 13 N 1.46904 * 109.46941 * 66.01274 * 3 2 1 14 14 C 1.46882 * 110.99787 * 73.58225 * 13 3 2 15 15 C 1.53284 * 109.42317 * 189.13336 * 14 13 3 16 16 C 1.51442 * 108.31639 * 305.86993 * 15 14 13 17 17 O 1.20757 * 121.14837 * 229.39206 * 16 15 14 18 18 C 1.51499 * 117.70006 * 49.36639 * 16 15 14 19 19 H 1.08999 * 109.70724 * 191.81838 * 18 16 15 20 20 C 1.53005 * 109.70770 * 71.24185 * 18 16 15 21 21 C 1.46448 * 111.00043 * 198.37772 * 13 3 2 22 22 C 1.53978 * 109.90939 * 50.20085 * 21 13 3 23 23 C 1.54950 * 104.13024 * 217.07310 * 22 21 13 24 24 C 1.54908 * 102.78309 * 37.69923 * 23 22 21 25 25 C 1.53592 * 110.11747 * 292.69876 * 21 13 3 26 26 H 1.08997 * 109.47402 * 299.99873 * 1 2 3 27 27 H 1.09004 * 109.46801 * 60.00187 * 1 2 3 28 28 H 1.08998 * 109.46707 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47402 * 240.00127 * 2 1 3 30 30 H 1.08994 * 109.47540 * 119.99869 * 2 1 3 31 31 H 0.97009 * 119.99720 * 355.34242 * 8 7 5 32 32 H 1.09005 * 109.47309 * 309.11636 * 14 13 3 33 33 H 1.08998 * 109.47746 * 69.13335 * 14 13 3 34 34 H 1.09001 * 109.69670 * 65.57388 * 15 14 13 35 35 H 1.09002 * 109.69638 * 186.16359 * 15 14 13 36 36 H 1.09001 * 109.47317 * 52.42368 * 20 18 16 37 37 H 1.09000 * 109.47271 * 172.42694 * 20 18 16 38 38 H 1.09002 * 109.46718 * 292.42517 * 20 18 16 39 39 H 1.09005 * 110.49917 * 335.73471 * 22 21 13 40 40 H 1.09004 * 110.49921 * 98.40664 * 22 21 13 41 41 H 1.09009 * 110.74851 * 279.37775 * 23 22 21 42 42 H 1.09000 * 110.90838 * 156.10273 * 23 22 21 43 43 H 1.08999 * 110.48524 * 203.53900 * 24 23 22 44 44 H 1.09008 * 110.59669 * 80.95893 * 24 23 22 45 45 H 1.08998 * 110.05206 * 238.53752 * 25 21 13 46 46 H 1.09000 * 110.05690 * 0.03522 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5914 1.9865 -0.8312 5 6 3.5396 1.4452 -0.1489 6 1 4.1692 1.3626 0.7247 7 6 4.1079 1.5531 -1.4004 8 7 3.3488 1.5088 -2.4734 9 14 5.9563 1.7623 -1.5721 10 1 6.2933 3.2085 -1.5669 11 1 6.6379 1.0912 -0.4363 12 1 6.4068 1.1535 -2.8494 13 7 1.6724 2.0918 1.2654 14 6 2.5024 1.5969 2.3716 15 6 1.9451 2.1195 3.7004 16 6 1.8374 3.6274 3.6112 17 8 2.2813 4.3379 4.4810 18 6 1.1542 4.2138 2.3928 19 1 1.3302 5.2888 2.3544 20 6 -0.3495 3.9396 2.4625 21 6 1.7433 3.5498 1.1472 22 6 0.9700 4.0128 -0.1013 23 6 1.8141 5.1886 -0.6546 24 6 3.2675 4.7148 -0.4041 25 6 3.2014 3.9943 0.9593 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.3986 1.3327 -2.3883 32 1 2.4899 0.5069 2.3757 33 1 3.5262 1.9482 2.2432 34 1 0.9590 1.6908 3.8793 35 1 2.6178 1.8467 4.5136 36 1 -0.7365 4.2781 3.4236 37 1 -0.8542 4.4753 1.6585 38 1 -0.5290 2.8698 2.3549 39 1 0.9105 3.2078 -0.8338 40 1 -0.0279 4.3552 0.1729 41 1 1.6066 6.1059 -0.1034 42 1 1.6323 5.3305 -1.7199 43 1 3.9434 5.5683 -0.3521 44 1 3.5858 4.0243 -1.1853 45 1 3.4895 4.6782 1.7577 46 1 3.8595 3.1254 0.9552 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:46 Heat of formation + Delta-G solvation = -46.681232 kcal Electronic energy + Delta-G solvation = -25144.160915 eV Core-core repulsion = 22033.039939 eV Total energy + Delta-G solvation = -3111.120976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07142 -39.69614 -37.02258 -35.50147 -33.65957 -33.16891 -31.39543 -29.62045 -28.17895 -26.91124 -25.39662 -24.72525 -24.07364 -21.73968 -21.22971 -20.59928 -19.21299 -17.98988 -17.63202 -16.93232 -16.49876 -16.23548 -15.68948 -15.51851 -15.38776 -15.04568 -14.99845 -14.36087 -14.05376 -13.94345 -13.66375 -13.36922 -13.19009 -12.97964 -12.68531 -12.58571 -12.37492 -12.31414 -12.20532 -12.06684 -12.04011 -11.87357 -11.73193 -11.58895 -11.51615 -11.40973 -11.09762 -10.97236 -10.47078 -10.29865 -10.15709 -8.73760 -8.34799 -6.06052 0.94854 1.51507 1.53748 1.68964 2.57737 3.08071 3.24426 3.38938 3.73373 3.76666 3.94073 4.11317 4.20248 4.28815 4.34009 4.47262 4.50590 4.60405 4.66468 4.69226 4.77630 4.84024 4.84632 4.86034 4.89009 4.98634 5.03377 5.09665 5.12346 5.13741 5.19370 5.26767 5.33329 5.34674 5.40053 5.49738 5.54648 5.62955 5.66225 5.75128 5.81973 6.14333 6.23444 6.47277 6.69297 6.71424 6.82632 7.63910 8.97350 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016408 B = 0.008757 C = 0.007996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.125798 B = 3196.697058 C = 3500.783907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C 0.189 3.811 4 H 0.050 0.950 5 C -0.597 4.597 6 H 0.044 0.956 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 1.071 2.929 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.293 1.293 13 N -0.506 5.506 14 C 0.067 3.933 15 C -0.158 4.158 16 C 0.374 3.626 17 O -0.503 6.503 18 C -0.118 4.118 19 H 0.085 0.915 20 C -0.128 4.128 21 C 0.137 3.863 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.161 4.161 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 2.797 7.386 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.139 4.139 3 C 0.083 3.917 4 H 0.068 0.932 5 C -0.637 4.637 6 H 0.062 0.938 7 C -0.199 4.199 8 N -0.570 5.570 9 Si 0.899 3.101 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.219 1.219 13 N -0.229 5.229 14 C -0.061 4.061 15 C -0.196 4.196 16 C 0.253 3.747 17 O -0.380 6.380 18 C -0.138 4.138 19 H 0.103 0.897 20 C -0.185 4.185 21 C 0.047 3.953 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.200 4.200 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.331 3.257 6.851 9.880 hybrid contribution 0.372 -0.179 0.498 0.647 sum -5.959 3.077 7.348 9.948 Atomic orbital electron populations 1.21622 0.95527 1.00190 1.01450 1.21520 0.95334 0.98295 0.98719 1.19578 0.92690 0.91149 0.88311 0.93211 1.22565 0.93828 1.53037 0.94226 0.93775 1.26074 1.07326 0.93933 0.92614 1.70845 1.07487 1.47481 1.31230 0.83523 0.73893 0.77143 0.75586 1.20825 1.20576 1.21889 1.62187 1.52115 1.03352 1.05214 1.21897 0.94992 1.00128 0.89099 1.22413 1.05164 0.93014 0.98996 1.25348 0.72266 0.92481 0.84655 1.90338 1.40529 1.65688 1.41453 1.22006 0.98761 1.00118 0.92867 0.89674 1.21699 0.90547 1.04009 1.02261 1.21091 0.92599 0.88258 0.93370 1.22699 0.98881 0.97758 0.96030 1.22423 0.94526 0.98058 1.00259 1.22250 0.97214 0.98553 0.97798 1.23105 0.99874 1.01012 0.95985 0.91284 0.94650 0.93596 0.95971 0.93685 0.92573 0.90252 0.95663 0.85817 0.89164 0.92201 0.90289 0.90409 0.91751 0.89259 0.90596 0.92352 0.93148 0.92823 0.94896 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.81 71.98 0.71 -3.47 16 2 C -0.10 -3.91 5.42 30.60 0.17 -3.74 16 3 C 0.19 7.80 1.14 44.17 0.05 7.85 16 4 H 0.05 2.29 3.52 -2.39 -0.01 2.28 16 5 C -0.60 -28.24 4.76 25.60 0.12 -28.12 16 6 H 0.04 2.17 5.26 -2.91 -0.02 2.15 16 7 C 0.00 0.11 3.96 84.65 0.34 0.44 16 8 N -0.93 -50.86 13.55 21.45 0.29 -50.57 16 9 Si 1.07 48.30 29.91 68.60 2.05 50.35 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.51 -17.41 3.32 -823.74 -2.73 -20.14 16 14 C 0.07 2.26 4.33 86.40 0.37 2.63 16 15 C -0.16 -4.39 6.23 30.18 0.19 -4.20 16 16 C 0.37 11.78 5.46 29.59 0.16 11.94 16 17 O -0.50 -18.67 17.91 -1.44 -0.03 -18.70 16 18 C -0.12 -3.41 2.06 -11.30 -0.02 -3.44 16 19 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 20 C -0.13 -2.93 8.52 71.98 0.61 -2.31 16 21 C 0.14 4.58 0.24 4.13 0.00 4.58 16 22 C -0.12 -3.80 5.58 31.59 0.18 -3.62 16 23 C -0.11 -3.74 6.91 31.91 0.22 -3.52 16 24 C -0.12 -4.66 6.74 31.70 0.21 -4.45 16 25 C -0.16 -6.21 4.39 31.25 0.14 -6.07 16 26 H 0.07 2.03 7.78 -2.39 -0.02 2.02 16 27 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 1.71 6.52 -2.39 -0.02 1.69 16 31 H 0.26 14.38 6.80 -92.70 -0.63 13.75 16 32 H 0.08 2.65 6.44 -2.38 -0.02 2.64 16 33 H 0.03 0.99 4.81 -2.39 -0.01 0.97 16 34 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 37 H 0.08 1.61 6.26 -2.39 -0.01 1.60 16 38 H 0.08 1.81 7.66 -2.39 -0.02 1.79 16 39 H 0.06 2.48 4.98 -2.38 -0.01 2.47 16 40 H 0.09 2.40 5.52 -2.38 -0.01 2.39 16 41 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 2.47 6.36 -2.38 -0.02 2.45 16 45 H 0.03 1.24 7.38 -2.39 -0.02 1.22 16 46 H 0.09 3.98 3.32 -2.39 -0.01 3.97 16 Total: -1.00 -55.16 325.55 4.14 -51.02 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.11 Total: 23.52 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 3.44 Total: -35.49 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -2.44 Total: -70.71 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.03 Total: -18.70 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.05 Total: 50.35 kcal Total: -55.16 4.14 -51.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.338 kcal (2) G-P(sol) polarization free energy of solvation -55.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds