Wall clock time and date at job start Tue Mar 31 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 H 1.09001 * 109.46861 * 44.71751 * 3 2 1 5 5 C 1.50697 * 109.47258 * 164.71997 * 3 2 1 6 6 H 1.08001 * 120.00068 * 115.28641 * 5 3 2 7 7 C 1.37878 * 119.99752 * 295.28656 * 5 3 2 8 8 N 1.31522 * 119.99630 * 180.02562 * 7 5 3 9 9 Si 1.86789 * 120.00305 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47652 * 89.99680 * 9 7 5 11 11 H 1.48502 * 109.47479 * 209.99954 * 9 7 5 12 12 H 1.48507 * 109.47148 * 329.99681 * 9 7 5 13 13 N 1.46899 * 109.46965 * 284.72055 * 3 2 1 14 14 C 1.46883 * 111.00064 * 26.48364 * 13 3 2 15 15 C 1.53290 * 109.42452 * 189.12678 * 14 13 3 16 16 C 1.51439 * 108.31684 * 305.87123 * 15 14 13 17 17 O 1.20766 * 121.15050 * 229.35208 * 16 15 14 18 18 C 1.51498 * 117.69818 * 49.38123 * 16 15 14 19 19 H 1.09002 * 109.70979 * 191.80542 * 18 16 15 20 20 C 1.53002 * 109.74423 * 71.19730 * 18 16 15 21 21 C 1.46442 * 111.00298 * 151.28333 * 13 3 2 22 22 C 1.53986 * 109.91598 * 50.20225 * 21 13 3 23 23 C 1.54959 * 104.12571 * 217.04092 * 22 21 13 24 24 C 1.54919 * 102.78048 * 37.71228 * 23 22 21 25 25 C 1.53594 * 110.12439 * 292.69487 * 21 13 3 26 26 H 1.09001 * 109.47566 * 201.36408 * 1 2 3 27 27 H 1.09004 * 109.47056 * 321.36176 * 1 2 3 28 28 H 1.09003 * 109.47466 * 81.35990 * 1 2 3 29 29 H 1.09000 * 109.46875 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46982 * 120.00120 * 2 1 3 31 31 H 0.96993 * 119.99904 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47680 * 309.11204 * 14 13 3 33 33 H 1.09000 * 109.47703 * 69.13936 * 14 13 3 34 34 H 1.09003 * 109.69520 * 65.58146 * 15 14 13 35 35 H 1.09004 * 109.68963 * 186.16603 * 15 14 13 36 36 H 1.08995 * 109.47384 * 293.60669 * 20 18 16 37 37 H 1.09003 * 109.47321 * 53.60839 * 20 18 16 38 38 H 1.09006 * 109.47068 * 173.60545 * 20 18 16 39 39 H 1.09001 * 110.49592 * 335.69782 * 22 21 13 40 40 H 1.08998 * 110.50256 * 98.38092 * 22 21 13 41 41 H 1.08996 * 110.75068 * 279.39059 * 23 22 21 42 42 H 1.08998 * 110.90439 * 156.10366 * 23 22 21 43 43 H 1.09002 * 110.48200 * 203.54302 * 24 23 22 44 44 H 1.08995 * 110.60025 * 80.95943 * 24 23 22 45 45 H 1.09008 * 110.04779 * 238.57347 * 25 21 13 46 46 H 1.08999 * 110.05273 * 0.02562 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4727 2.0284 0.7231 5 6 3.4997 1.4591 0.3744 6 1 4.2373 1.7888 -0.3423 7 6 3.8934 1.0536 1.6320 8 7 5.1673 1.0686 1.9589 9 14 2.6178 0.4828 2.8714 10 1 2.4146 -0.9818 2.7340 11 1 3.0901 0.7903 4.2453 12 1 1.3342 1.1863 2.6203 13 7 1.8715 2.0214 -1.3395 14 6 0.7697 1.3697 -2.0598 15 6 0.7697 1.8350 -3.5204 16 6 0.7337 3.3489 -3.5376 17 8 -0.0598 3.9471 -4.2239 18 6 1.7279 4.0869 -2.6647 19 1 1.4583 5.1417 -2.6113 20 6 3.1349 3.9430 -3.2484 21 6 1.6849 3.4720 -1.2647 22 6 2.7869 4.0982 -0.3902 23 6 2.0623 5.2341 0.3753 24 6 0.6742 4.6147 0.6743 25 6 0.3428 3.7982 -0.5929 26 1 -0.3634 -0.9570 0.3744 27 1 -0.3633 0.8027 0.6417 28 1 -0.3634 0.1544 -1.0160 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.4443 0.7830 2.8435 32 1 0.9007 0.2883 -2.0228 33 1 -0.1783 1.6374 -1.5930 34 1 1.6735 1.4833 -4.0180 35 1 -0.1087 1.4408 -4.0314 36 1 3.4496 2.9013 -3.1854 37 1 3.1294 4.2584 -4.2918 38 1 3.8280 4.5668 -2.6839 39 1 3.1852 3.3614 0.3074 40 1 3.5833 4.5052 -1.0131 41 1 1.9629 6.1200 -0.2518 42 1 2.5854 5.4745 1.3009 43 1 -0.0679 5.3981 0.8283 44 1 0.7251 3.9622 1.5459 45 1 -0.2783 4.3890 -1.2663 46 1 -0.1725 2.8771 -0.3206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:51 Heat of formation + Delta-G solvation = -11.237917 kcal Electronic energy + Delta-G solvation = -25009.273235 eV Core-core repulsion = 21899.689196 eV Total energy + Delta-G solvation = -3109.584038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85681 -38.38144 -36.09991 -33.89688 -32.49239 -31.26059 -30.52395 -28.46373 -27.21392 -26.11592 -23.95709 -22.92244 -22.34174 -20.54135 -19.96370 -19.14271 -17.43571 -16.82092 -16.36810 -15.78319 -15.08360 -15.01611 -14.48764 -14.30582 -14.12716 -13.76297 -13.01356 -12.82301 -12.79321 -12.56589 -12.45226 -12.08296 -11.92836 -11.67336 -11.53985 -11.38179 -11.14274 -11.01010 -10.86217 -10.62628 -10.53556 -10.46907 -10.24558 -10.16768 -10.04272 -9.97885 -9.65059 -9.42271 -9.19019 -8.91418 -8.55578 -7.30577 -6.13693 -4.06886 2.19483 3.19992 3.31529 3.32837 4.31895 4.33233 4.52059 4.96395 4.98756 5.12489 5.13364 5.31182 5.35595 5.42405 5.54190 5.62273 5.71430 5.76119 5.77991 5.91253 5.92980 5.99667 6.02817 6.08242 6.13537 6.16773 6.19221 6.22098 6.28703 6.33344 6.39863 6.46287 6.55150 6.59630 6.62548 6.68619 6.71544 6.77940 6.96705 7.13485 7.55063 7.65781 7.69194 7.89779 8.07378 8.60972 8.99394 9.48099 10.97984 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.008275 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.077930 B = 3382.846649 C = 3767.809944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.186 3.814 4 H 0.020 0.980 5 C -0.490 4.490 6 H 0.088 0.912 7 C 0.071 3.929 8 N -0.893 5.893 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.264 1.264 13 N -0.509 5.509 14 C 0.041 3.959 15 C -0.169 4.169 16 C 0.371 3.629 17 O -0.475 6.475 18 C -0.119 4.119 19 H 0.086 0.914 20 C -0.134 4.134 21 C 0.132 3.868 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.157 4.157 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 2.968 -5.561 9.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.177 4.177 3 C 0.079 3.921 4 H 0.037 0.963 5 C -0.528 4.528 6 H 0.106 0.894 7 C -0.131 4.131 8 N -0.531 5.531 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.222 1.222 12 H -0.189 1.189 13 N -0.232 5.232 14 C -0.087 4.087 15 C -0.207 4.207 16 C 0.248 3.752 17 O -0.350 6.350 18 C -0.139 4.139 19 H 0.104 0.896 20 C -0.191 4.191 21 C 0.042 3.958 22 C -0.185 4.185 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.196 4.196 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.165 0.835 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.345 3.143 -6.036 10.013 hybrid contribution -1.463 -0.276 1.274 1.959 sum -8.808 2.867 -4.762 10.415 Atomic orbital electron populations 1.22691 0.98325 1.00646 1.02266 1.22244 0.92873 1.00566 1.01993 1.19907 0.97623 0.89560 0.84991 0.96289 1.20921 0.90582 1.42509 0.98784 0.89379 1.24920 0.94799 0.95410 0.97989 1.69871 1.14626 1.47627 1.20968 0.87099 0.82778 0.79346 0.80881 1.20496 1.22222 1.18877 1.61866 1.39692 1.01336 1.20337 1.22854 0.93938 1.00859 0.91057 1.22477 1.04179 0.94188 0.99882 1.25117 0.80485 0.92338 0.77295 1.90343 1.35757 1.72440 1.36481 1.22006 0.96707 0.99673 0.95517 0.89613 1.21719 0.93898 1.04631 0.98866 1.21270 0.94037 0.88638 0.91874 1.23408 0.96031 0.98853 1.00216 1.22494 0.95665 0.97966 1.00040 1.22290 0.97140 0.98533 0.97598 1.22932 0.98677 1.00207 0.97820 0.94061 0.93424 0.91161 0.91255 0.92227 0.92594 0.88309 0.94243 0.87743 0.90047 0.89946 0.93819 0.91136 0.83540 0.91744 0.92966 0.91872 0.92839 0.91626 0.92674 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.68 37.15 0.32 -2.62 16 2 C -0.14 -2.67 4.33 -26.73 -0.12 -2.79 16 3 C 0.19 3.82 0.66 -68.87 -0.05 3.77 16 4 H 0.02 0.42 4.08 -51.93 -0.21 0.21 16 5 C -0.49 -12.04 6.30 -34.44 -0.22 -12.26 16 6 H 0.09 2.40 7.86 -52.49 -0.41 1.98 16 7 C 0.07 1.86 5.44 -17.82 -0.10 1.77 16 8 N -0.89 -25.24 13.96 55.43 0.77 -24.47 16 9 Si 0.87 20.27 24.67 -169.99 -4.19 16.07 16 10 H -0.28 -6.43 6.83 56.52 0.39 -6.04 16 11 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -5.90 6.41 56.52 0.36 -5.54 16 13 N -0.51 -9.06 3.78 -211.71 -0.80 -9.86 16 14 C 0.04 0.63 3.20 -3.68 -0.01 0.61 16 15 C -0.17 -2.37 6.23 -27.37 -0.17 -2.54 16 16 C 0.37 5.88 5.47 -28.28 -0.15 5.72 16 17 O -0.48 -8.66 17.91 5.99 0.11 -8.55 16 18 C -0.12 -1.85 2.06 -91.39 -0.19 -2.03 16 19 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 20 C -0.13 -1.94 8.54 37.16 0.32 -1.62 16 21 C 0.13 2.22 0.23 -131.04 -0.03 2.19 16 22 C -0.15 -2.68 5.21 -25.18 -0.13 -2.81 16 23 C -0.12 -1.97 6.91 -24.68 -0.17 -2.14 16 24 C -0.12 -1.87 6.51 -25.01 -0.16 -2.03 16 25 C -0.16 -2.56 4.41 -25.72 -0.11 -2.67 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 28 H 0.07 0.99 4.38 -51.93 -0.23 0.76 16 29 H 0.07 1.28 6.79 -51.93 -0.35 0.93 16 30 H 0.06 1.27 4.10 -51.93 -0.21 1.06 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 32 H 0.10 1.47 4.56 -51.93 -0.24 1.23 16 33 H 0.04 0.61 4.35 -51.93 -0.23 0.38 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.28 7.69 -51.93 -0.40 0.88 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.00 6.20 -51.93 -0.32 0.68 16 39 H 0.15 3.20 3.82 -51.93 -0.20 3.00 16 40 H 0.06 1.11 5.50 -51.93 -0.29 0.83 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.12 7.68 -51.93 -0.40 0.73 16 45 H 0.05 0.87 7.38 -51.92 -0.38 0.49 16 46 H 0.07 1.13 5.15 -51.93 -0.27 0.86 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -27.07 315.11 -7.42 -34.49 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.09 Total: 7.01 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -0.97 Total: -19.45 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.03 Total: -34.33 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.11 Total: -8.55 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.19 Total: 16.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.07 -7.42 -34.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.250 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds