Wall clock time and date at job start Tue Mar 31 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47541 * 2 1 4 4 H 1.09001 * 109.46861 * 44.71751 * 3 2 1 5 5 C 1.50697 * 109.47258 * 164.71997 * 3 2 1 6 6 H 1.08001 * 120.00068 * 115.28641 * 5 3 2 7 7 C 1.37878 * 119.99752 * 295.28656 * 5 3 2 8 8 N 1.31522 * 119.99630 * 180.02562 * 7 5 3 9 9 Si 1.86789 * 120.00305 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47652 * 89.99680 * 9 7 5 11 11 H 1.48502 * 109.47479 * 209.99954 * 9 7 5 12 12 H 1.48507 * 109.47148 * 329.99681 * 9 7 5 13 13 N 1.46899 * 109.46965 * 284.72055 * 3 2 1 14 14 C 1.46883 * 111.00064 * 26.48364 * 13 3 2 15 15 C 1.53290 * 109.42452 * 189.12678 * 14 13 3 16 16 C 1.51439 * 108.31684 * 305.87123 * 15 14 13 17 17 O 1.20766 * 121.15050 * 229.35208 * 16 15 14 18 18 C 1.51498 * 117.69818 * 49.38123 * 16 15 14 19 19 H 1.09002 * 109.70979 * 191.80542 * 18 16 15 20 20 C 1.53002 * 109.74423 * 71.19730 * 18 16 15 21 21 C 1.46442 * 111.00298 * 151.28333 * 13 3 2 22 22 C 1.53986 * 109.91598 * 50.20225 * 21 13 3 23 23 C 1.54959 * 104.12571 * 217.04092 * 22 21 13 24 24 C 1.54919 * 102.78048 * 37.71228 * 23 22 21 25 25 C 1.53594 * 110.12439 * 292.69487 * 21 13 3 26 26 H 1.09001 * 109.47566 * 201.36408 * 1 2 3 27 27 H 1.09004 * 109.47056 * 321.36176 * 1 2 3 28 28 H 1.09003 * 109.47466 * 81.35990 * 1 2 3 29 29 H 1.09000 * 109.46875 * 239.99894 * 2 1 3 30 30 H 1.09000 * 109.46982 * 120.00120 * 2 1 3 31 31 H 0.96993 * 119.99904 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47680 * 309.11204 * 14 13 3 33 33 H 1.09000 * 109.47703 * 69.13936 * 14 13 3 34 34 H 1.09003 * 109.69520 * 65.58146 * 15 14 13 35 35 H 1.09004 * 109.68963 * 186.16603 * 15 14 13 36 36 H 1.08995 * 109.47384 * 293.60669 * 20 18 16 37 37 H 1.09003 * 109.47321 * 53.60839 * 20 18 16 38 38 H 1.09006 * 109.47068 * 173.60545 * 20 18 16 39 39 H 1.09001 * 110.49592 * 335.69782 * 22 21 13 40 40 H 1.08998 * 110.50256 * 98.38092 * 22 21 13 41 41 H 1.08996 * 110.75068 * 279.39059 * 23 22 21 42 42 H 1.08998 * 110.90439 * 156.10366 * 23 22 21 43 43 H 1.09002 * 110.48200 * 203.54302 * 24 23 22 44 44 H 1.08995 * 110.60025 * 80.95943 * 24 23 22 45 45 H 1.09008 * 110.04779 * 238.57347 * 25 21 13 46 46 H 1.08999 * 110.05273 * 0.02562 * 25 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.4727 2.0284 0.7231 5 6 3.4997 1.4591 0.3744 6 1 4.2373 1.7888 -0.3423 7 6 3.8934 1.0536 1.6320 8 7 5.1673 1.0686 1.9589 9 14 2.6178 0.4828 2.8714 10 1 2.4146 -0.9818 2.7340 11 1 3.0901 0.7903 4.2453 12 1 1.3342 1.1863 2.6203 13 7 1.8715 2.0214 -1.3395 14 6 0.7697 1.3697 -2.0598 15 6 0.7697 1.8350 -3.5204 16 6 0.7337 3.3489 -3.5376 17 8 -0.0598 3.9471 -4.2239 18 6 1.7279 4.0869 -2.6647 19 1 1.4583 5.1417 -2.6113 20 6 3.1349 3.9430 -3.2484 21 6 1.6849 3.4720 -1.2647 22 6 2.7869 4.0982 -0.3902 23 6 2.0623 5.2341 0.3753 24 6 0.6742 4.6147 0.6743 25 6 0.3428 3.7982 -0.5929 26 1 -0.3634 -0.9570 0.3744 27 1 -0.3633 0.8027 0.6417 28 1 -0.3634 0.1544 -1.0160 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.4443 0.7830 2.8435 32 1 0.9007 0.2883 -2.0228 33 1 -0.1783 1.6374 -1.5930 34 1 1.6735 1.4833 -4.0180 35 1 -0.1087 1.4408 -4.0314 36 1 3.4496 2.9013 -3.1854 37 1 3.1294 4.2584 -4.2918 38 1 3.8280 4.5668 -2.6839 39 1 3.1852 3.3614 0.3074 40 1 3.5833 4.5052 -1.0131 41 1 1.9629 6.1200 -0.2518 42 1 2.5854 5.4745 1.3009 43 1 -0.0679 5.3981 0.8283 44 1 0.7251 3.9622 1.5459 45 1 -0.2783 4.3890 -1.2663 46 1 -0.1725 2.8771 -0.3206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:50 Heat of formation + Delta-G solvation = -27.214138 kcal Electronic energy + Delta-G solvation = -25009.966016 eV Core-core repulsion = 21899.689196 eV Total energy + Delta-G solvation = -3110.276819 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20281 -39.73320 -37.50818 -35.36301 -34.19555 -32.65339 -31.90543 -29.86184 -28.78616 -27.43735 -25.32089 -24.43415 -23.70375 -22.01838 -21.30110 -20.53656 -18.96436 -18.49097 -17.79270 -17.09343 -16.58180 -16.36637 -15.95475 -15.73375 -15.48877 -15.07552 -14.68758 -14.35066 -14.20006 -13.94202 -13.88177 -13.38081 -13.26068 -13.04823 -13.03751 -12.78677 -12.54045 -12.45026 -12.31459 -12.05384 -11.88691 -11.83908 -11.74124 -11.59321 -11.50955 -11.37971 -11.15452 -11.01580 -10.96431 -10.50206 -10.19469 -8.74806 -8.16908 -6.09804 0.94156 1.32512 1.39168 1.45298 2.38350 3.03200 3.14329 3.21823 3.67453 3.73182 3.86857 4.03405 4.15066 4.20606 4.28572 4.32799 4.35678 4.46670 4.51338 4.55591 4.65133 4.73820 4.76351 4.80497 4.88792 4.90984 4.94947 4.98292 5.01062 5.04193 5.09738 5.13910 5.18169 5.21904 5.26299 5.29020 5.36245 5.45209 5.55687 5.62048 5.80525 6.00036 6.17851 6.48549 6.62563 6.81399 6.94456 7.47416 8.98620 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.008275 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.077930 B = 3382.846649 C = 3767.809944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.194 3.806 4 H 0.011 0.989 5 C -0.465 4.465 6 H 0.050 0.950 7 C 0.017 3.983 8 N -0.945 5.945 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.306 1.306 12 H -0.248 1.248 13 N -0.518 5.518 14 C 0.039 3.961 15 C -0.163 4.163 16 C 0.375 3.625 17 O -0.497 6.497 18 C -0.117 4.117 19 H 0.091 0.909 20 C -0.129 4.129 21 C 0.134 3.866 22 C -0.151 4.151 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.154 4.154 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 3.068 -6.840 12.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.178 4.178 3 C 0.087 3.913 4 H 0.028 0.972 5 C -0.504 4.504 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.587 5.587 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.234 1.234 12 H -0.172 1.172 13 N -0.242 5.242 14 C -0.088 4.088 15 C -0.201 4.201 16 C 0.253 3.747 17 O -0.374 6.374 18 C -0.137 4.137 19 H 0.109 0.891 20 C -0.186 4.186 21 C 0.044 3.956 22 C -0.188 4.188 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.193 4.193 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.989 3.239 -7.333 12.808 hybrid contribution -0.586 -0.234 1.574 1.696 sum -10.575 3.004 -5.759 12.410 Atomic orbital electron populations 1.22618 0.95396 1.01394 1.03836 1.22159 0.95490 0.98849 1.01312 1.19634 0.94533 0.90786 0.86381 0.97156 1.21086 0.92270 1.39609 0.97430 0.93135 1.25534 0.96036 0.96444 0.99939 1.70015 1.16670 1.50652 1.21335 0.86254 0.81318 0.79305 0.78203 1.19852 1.23400 1.17188 1.61724 1.41565 1.02081 1.18828 1.22940 0.93154 1.01179 0.91545 1.22473 1.05791 0.92722 0.99068 1.25282 0.79668 0.93167 0.76533 1.90348 1.36522 1.73017 1.37465 1.21987 0.97215 0.99861 0.94598 0.89119 1.21661 0.93338 1.03782 0.99860 1.21249 0.93812 0.87986 0.92590 1.23227 0.96903 0.98828 0.99857 1.22478 0.95448 0.97924 0.99940 1.22284 0.97569 0.98855 0.96760 1.22896 0.98161 1.00248 0.97976 0.92427 0.94057 0.88769 0.90573 0.94367 0.93062 0.87434 0.93551 0.86691 0.87854 0.91275 0.92147 0.91287 0.87570 0.91693 0.90816 0.92311 0.90477 0.93362 0.91775 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.08 8.68 71.98 0.62 -4.46 16 2 C -0.14 -5.15 4.33 30.59 0.13 -5.02 16 3 C 0.19 7.84 0.66 44.17 0.03 7.87 16 4 H 0.01 0.46 4.08 -2.39 -0.01 0.45 16 5 C -0.47 -23.50 6.30 25.60 0.16 -23.34 16 6 H 0.05 2.89 7.86 -2.91 -0.02 2.86 16 7 C 0.02 0.94 5.44 84.65 0.46 1.40 16 8 N -0.95 -55.90 13.96 21.45 0.30 -55.60 16 9 Si 0.92 42.47 24.67 68.60 1.69 44.17 16 10 H -0.27 -12.18 6.83 99.48 0.68 -11.50 16 11 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.25 -10.63 6.41 99.48 0.64 -9.99 16 13 N -0.52 -17.74 3.78 -823.72 -3.11 -20.85 16 14 C 0.04 1.08 3.20 86.40 0.28 1.35 16 15 C -0.16 -3.99 6.23 30.18 0.19 -3.80 16 16 C 0.37 10.79 5.47 29.59 0.16 10.95 16 17 O -0.50 -16.64 17.91 -1.47 -0.03 -16.67 16 18 C -0.12 -3.37 2.06 -11.30 -0.02 -3.39 16 19 H 0.09 2.55 8.12 -2.39 -0.02 2.53 16 20 C -0.13 -3.55 8.54 71.98 0.61 -2.94 16 21 C 0.13 4.30 0.23 4.14 0.00 4.30 16 22 C -0.15 -5.44 5.21 31.60 0.16 -5.27 16 23 C -0.12 -3.68 6.91 31.92 0.22 -3.46 16 24 C -0.12 -3.49 6.51 31.71 0.21 -3.28 16 25 C -0.15 -4.64 4.41 31.25 0.14 -4.50 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.04 1.25 7.32 -2.39 -0.02 1.23 16 28 H 0.09 2.26 4.38 -2.39 -0.01 2.25 16 29 H 0.08 2.66 6.79 -2.39 -0.02 2.65 16 30 H 0.04 1.57 4.10 -2.39 -0.01 1.56 16 31 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.11 2.81 4.56 -2.39 -0.01 2.80 16 33 H 0.05 1.25 4.35 -2.39 -0.01 1.24 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.07 2.08 7.69 -2.39 -0.02 2.07 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.90 6.20 -2.38 -0.01 1.89 16 39 H 0.11 4.78 3.82 -2.39 -0.01 4.77 16 40 H 0.06 2.27 5.50 -2.39 -0.01 2.25 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.60 7.68 -2.39 -0.02 1.58 16 45 H 0.06 1.83 7.38 -2.38 -0.02 1.81 16 46 H 0.06 1.98 5.15 -2.39 -0.01 1.96 16 Total: -1.00 -59.77 315.11 3.10 -56.68 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.89 Total: 25.86 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.36 Total: -33.58 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -2.81 Total: -76.45 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.03 Total: -16.67 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.69 Total: 44.17 kcal Total: -59.77 3.10 -56.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.464 kcal (2) G-P(sol) polarization free energy of solvation -59.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds