Wall clock time and date at job start Tue Mar 31 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47425 * 2 1 4 4 H 1.09006 * 109.46909 * 303.20744 * 3 2 1 5 5 C 1.50702 * 109.47033 * 183.20698 * 3 2 1 6 6 H 1.07996 * 119.99464 * 239.99772 * 5 3 2 7 7 C 1.37875 * 119.99934 * 60.00021 * 5 3 2 8 8 N 1.31509 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99831 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47106 * 89.99770 * 9 7 5 11 11 H 1.48504 * 109.47157 * 210.00118 * 9 7 5 12 12 H 1.48503 * 109.46975 * 329.99864 * 9 7 5 13 13 N 1.46900 * 109.47376 * 63.20191 * 3 2 1 14 14 C 1.46849 * 110.99603 * 66.80042 * 13 3 2 15 15 C 1.53041 * 109.53156 * 185.83331 * 14 13 3 16 16 C 1.53102 * 109.28542 * 300.84768 * 15 14 13 17 17 C 1.52946 * 109.46764 * 297.85838 * 16 15 14 18 18 C 1.53227 * 109.43153 * 303.27905 * 17 16 15 19 19 C 1.51276 * 108.53355 * 305.38039 * 18 17 16 20 20 O 1.20760 * 120.86014 * 231.37174 * 19 18 17 21 21 C 1.51257 * 118.27879 * 51.39122 * 19 18 17 22 22 C 1.52945 * 109.47736 * 177.39503 * 16 15 14 23 23 C 1.53122 * 109.17172 * 57.62728 * 16 15 14 24 24 C 1.46848 * 111.00034 * 191.00848 * 13 3 2 25 25 H 1.09000 * 109.46714 * 64.77988 * 1 2 3 26 26 H 1.09001 * 109.47808 * 184.77855 * 1 2 3 27 27 H 1.09000 * 109.47089 * 304.78108 * 1 2 3 28 28 H 1.09001 * 109.46838 * 239.99449 * 2 1 3 29 29 H 1.09003 * 109.46327 * 119.99989 * 2 1 3 30 30 H 0.97002 * 120.00566 * 180.02562 * 8 7 5 31 31 H 1.09006 * 109.46171 * 65.81315 * 14 13 3 32 32 H 1.08998 * 109.45368 * 305.84834 * 14 13 3 33 33 H 1.09002 * 109.50081 * 180.90519 * 15 14 13 34 34 H 1.09000 * 109.53137 * 60.81051 * 15 14 13 35 35 H 1.08999 * 109.47712 * 63.26461 * 17 16 15 36 36 H 1.08999 * 109.47683 * 183.29073 * 17 16 15 37 37 H 1.09003 * 109.62521 * 185.66466 * 18 17 16 38 38 H 1.08997 * 109.78643 * 65.18746 * 18 17 16 39 39 H 1.08998 * 109.62656 * 188.90196 * 21 19 18 40 40 H 1.09002 * 109.62670 * 68.33613 * 21 19 18 41 41 H 1.08997 * 109.47304 * 176.71836 * 22 16 15 42 42 H 1.08995 * 109.47397 * 296.73195 * 22 16 15 43 43 H 1.09004 * 109.50435 * 62.28953 * 23 16 15 44 44 H 1.08995 * 109.50524 * 182.41216 * 23 16 15 45 45 H 1.08998 * 109.46427 * 294.16242 * 24 13 3 46 46 H 1.08992 * 109.46465 * 54.14490 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6306 1.9726 -0.8599 5 6 3.5450 1.4431 -0.0795 6 1 4.1271 1.8958 0.7095 7 6 4.1785 0.8657 -1.1594 8 7 3.4696 0.3140 -2.1199 9 14 6.0439 0.8659 -1.2576 10 1 6.5739 -0.3595 -0.6075 11 1 6.4647 0.8924 -2.6815 12 1 6.5761 2.0651 -0.5618 13 7 1.6147 2.1123 1.2362 14 6 2.2765 1.5243 2.4078 15 6 1.7037 2.1449 3.6841 16 6 1.9274 3.6592 3.6544 17 6 3.4282 3.9523 3.6246 18 6 4.1006 3.2927 4.8331 19 6 3.3990 3.7612 6.0888 20 8 4.0256 4.2155 7.0157 21 6 1.8922 3.6453 6.1535 22 6 1.2993 4.2919 4.8972 23 6 1.2698 4.2401 2.3996 24 6 1.8556 3.5589 1.1606 25 1 -0.3633 0.4379 -0.9297 26 1 -0.3635 -1.0241 0.0856 27 1 -0.3633 0.5862 0.8441 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.9153 -0.0925 -2.8795 31 1 3.3473 1.7213 2.3571 32 1 2.1055 0.4478 2.4191 33 1 2.2065 1.7198 4.5528 34 1 0.6356 1.9359 3.7434 35 1 3.8584 3.5526 2.7063 36 1 3.5889 5.0297 3.6624 37 1 5.1508 3.5820 4.8709 38 1 4.0222 2.2085 4.7528 39 1 1.5230 4.1614 7.0397 40 1 1.6072 2.5940 6.1933 41 1 1.5087 5.3616 4.9056 42 1 0.2212 4.1328 4.8806 43 1 0.1947 4.0642 2.4374 44 1 1.4623 5.3118 2.3507 45 1 2.9284 3.7466 1.1161 46 1 1.3793 3.9602 0.2662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:31 Heat of formation + Delta-G solvation = -71.764034 kcal Electronic energy + Delta-G solvation = -23835.623565 eV Core-core repulsion = 20723.414918 eV Total energy + Delta-G solvation = -3112.208648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.69906 -39.90083 -37.77903 -34.92033 -33.41383 -32.28388 -31.66160 -31.25312 -28.55400 -26.65117 -24.88496 -24.20817 -23.97709 -22.62301 -21.02586 -20.46263 -18.99658 -18.00137 -17.24748 -16.89163 -16.44718 -16.16614 -15.74766 -15.44670 -15.27899 -15.11554 -15.03557 -14.58130 -14.49078 -13.64939 -13.55313 -13.39120 -13.22099 -13.17811 -12.94184 -12.76429 -12.64154 -12.53042 -12.39885 -12.26101 -12.14206 -11.87557 -11.64526 -11.50036 -11.42667 -11.30640 -10.99238 -10.76479 -10.68196 -10.37983 -10.30510 -8.75716 -7.98338 -6.21622 0.95834 1.35528 1.38713 1.45565 2.40461 3.18260 3.18431 3.50152 3.74412 3.78013 3.84166 4.11943 4.24207 4.33054 4.37604 4.45829 4.56276 4.59991 4.66083 4.69087 4.80147 4.82261 4.88570 4.96897 4.97757 4.99245 5.06864 5.08613 5.12795 5.17988 5.23837 5.31396 5.35811 5.41989 5.46427 5.50369 5.51842 5.59905 5.65827 5.73663 5.86341 6.15499 6.27860 6.47522 6.50882 6.83692 7.03002 7.49451 8.94568 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.005870 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.937585 B = 4769.134664 C = 5631.837972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.220 3.780 4 H -0.002 1.002 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.526 5.526 14 C 0.062 3.938 15 C -0.100 4.100 16 C -0.054 4.054 17 C -0.104 4.104 18 C -0.170 4.170 19 C 0.371 3.629 20 O -0.507 6.507 21 C -0.164 4.164 22 C -0.092 4.092 23 C -0.093 4.093 24 C 0.061 3.939 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.020 0.980 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.016 0.984 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 5.632 13.082 15.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.250 5.250 14 C -0.066 4.066 15 C -0.138 4.138 16 C -0.054 4.054 17 C -0.142 4.142 18 C -0.208 4.208 19 C 0.250 3.750 20 O -0.384 6.384 21 C -0.201 4.201 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.068 4.068 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.034 0.966 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.010 5.717 13.437 15.792 hybrid contribution 2.366 -0.197 -1.084 2.610 sum -3.644 5.521 12.353 14.013 Atomic orbital electron populations 1.21572 0.96294 0.99836 1.00621 1.21416 0.94466 0.98328 1.00081 1.19000 0.91345 0.91401 0.87008 0.98368 1.22008 0.94160 1.36558 1.05552 0.92972 1.25559 1.01301 0.95281 0.95644 1.69999 1.36128 1.38782 1.10230 0.85866 0.82260 0.78309 0.77035 1.20395 1.21227 1.19834 1.62342 1.56884 1.02524 1.03225 1.21937 0.95843 0.98221 0.90588 1.21758 1.02002 0.93917 0.96111 1.20560 0.93750 0.95824 0.95307 1.21616 0.95595 1.00411 0.96573 1.22338 1.00474 1.03571 0.94410 1.25305 0.93113 0.70711 0.85878 1.90380 1.71218 1.36629 1.40137 1.22347 0.91680 1.05261 1.00842 1.21516 1.01329 0.99551 0.90551 1.21567 1.00517 0.98777 0.92168 1.21920 0.97674 0.89233 0.97975 0.95195 0.93806 0.91885 0.92452 0.95031 0.93135 0.96160 0.92821 0.90428 0.90453 0.92232 0.91408 0.90474 0.87366 0.88668 0.86315 0.91198 0.88617 0.90471 0.90884 0.96564 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.85 71.98 0.71 -4.13 16 2 C -0.10 -4.81 5.14 30.59 0.16 -4.66 16 3 C 0.22 10.49 1.72 44.17 0.08 10.56 16 4 H 0.00 -0.09 7.97 -2.38 -0.02 -0.11 16 5 C -0.54 -28.27 7.25 25.60 0.19 -28.09 16 6 H 0.05 2.71 5.84 -2.91 -0.02 2.69 16 7 C 0.02 1.17 5.30 84.65 0.45 1.62 16 8 N -0.91 -51.45 11.30 21.45 0.24 -51.21 16 9 Si 0.94 43.03 29.54 68.60 2.03 45.05 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.53 -20.04 3.89 -875.49 -3.41 -23.44 16 14 C 0.06 2.12 4.53 86.33 0.39 2.51 16 15 C -0.10 -2.37 4.00 30.64 0.12 -2.24 16 16 C -0.05 -1.17 0.51 -52.14 -0.03 -1.19 16 17 C -0.10 -2.53 4.19 30.65 0.13 -2.41 16 18 C -0.17 -3.91 5.64 30.11 0.17 -3.74 16 19 C 0.37 8.46 6.71 29.46 0.20 8.65 16 20 O -0.51 -15.28 17.89 -1.45 -0.03 -15.30 16 21 C -0.16 -2.64 5.65 30.10 0.17 -2.47 16 22 C -0.09 -1.45 4.78 30.65 0.15 -1.31 16 23 C -0.09 -2.26 4.87 30.65 0.15 -2.11 16 24 C 0.06 2.10 4.95 86.33 0.43 2.53 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.26 7.56 -2.39 -0.02 2.24 16 28 H 0.06 3.04 5.99 -2.39 -0.01 3.03 16 29 H 0.03 1.42 6.33 -2.39 -0.02 1.41 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.02 0.77 4.77 -2.38 -0.01 0.76 16 32 H 0.05 1.96 6.20 -2.39 -0.01 1.94 16 33 H 0.08 1.54 4.96 -2.39 -0.01 1.53 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.81 4.91 -2.39 -0.01 1.80 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 2.36 6.64 -2.39 -0.02 2.35 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 1.56 6.74 -2.39 -0.02 1.54 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 44 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.02 0.63 5.65 -2.39 -0.01 0.61 16 46 H 0.05 1.72 8.00 -2.39 -0.02 1.70 16 Total: -1.00 -60.98 330.30 3.25 -57.74 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.96 Total: 13.63 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.45 Total: -26.47 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -3.16 Total: -74.65 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.03 Total: -15.30 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -60.98 3.25 -57.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.026 kcal (2) G-P(sol) polarization free energy of solvation -60.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds