Wall clock time and date at job start Tue Mar 31 2020 01:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47017 * 2 1 4 4 C 1.52995 * 109.46734 * 120.00008 * 2 1 3 5 5 C 1.52999 * 109.47237 * 65.00522 * 4 2 1 6 6 C 1.53005 * 109.46874 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46727 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46875 * 179.97438 * 7 6 5 9 9 C 1.46899 * 111.00107 * 190.00314 * 8 7 6 10 10 C 1.50702 * 109.47363 * 71.54253 * 9 8 7 11 11 H 1.07998 * 120.00098 * 3.98911 * 10 9 8 12 12 C 1.37879 * 119.99918 * 183.98338 * 10 9 8 13 13 N 1.31515 * 119.99920 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00074 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47268 * 89.99563 * 14 12 10 16 16 H 1.48496 * 109.47397 * 209.99738 * 14 12 10 17 17 H 1.48502 * 109.47255 * 329.99594 * 14 12 10 18 18 C 1.46896 * 111.00316 * 66.04660 * 8 7 6 19 19 C 1.50699 * 109.47227 * 199.57120 * 18 8 7 20 20 C 1.34518 * 125.79416 * 89.99721 * 19 18 8 21 21 C 1.41385 * 106.84055 * 180.02562 * 20 19 18 22 22 C 1.34518 * 106.84155 * 359.97438 * 21 20 19 23 23 O 1.34302 * 125.78406 * 269.69022 * 19 18 8 24 24 H 1.08992 * 109.47219 * 300.00366 * 1 2 3 25 25 H 1.09005 * 109.47115 * 60.00696 * 1 2 3 26 26 H 1.09002 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47076 * 239.99914 * 2 1 3 28 28 H 1.08993 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47096 * 300.00192 * 3 2 1 30 30 H 1.09002 * 109.46900 * 59.99643 * 3 2 1 31 31 H 1.08993 * 109.47624 * 304.99741 * 4 2 1 32 32 H 1.09009 * 109.47144 * 184.99926 * 4 2 1 33 33 H 1.09001 * 109.47471 * 59.99778 * 5 4 2 34 34 H 1.08997 * 109.46938 * 299.99207 * 5 4 2 35 35 H 1.08996 * 109.47576 * 59.99899 * 6 5 4 36 36 H 1.08999 * 109.47036 * 299.98945 * 6 5 4 37 37 H 1.09001 * 109.47304 * 60.00070 * 7 6 5 38 38 H 1.08997 * 109.47251 * 299.99409 * 7 6 5 39 39 H 1.09003 * 109.47511 * 191.55094 * 9 8 7 40 40 H 1.09006 * 109.46720 * 311.54797 * 9 8 7 41 41 H 0.96994 * 119.99676 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.47313 * 79.56176 * 18 8 7 43 43 H 1.09003 * 109.47062 * 319.56561 * 18 8 7 44 44 H 1.07992 * 126.57498 * 0.03662 * 20 19 18 45 45 H 1.08001 * 126.57520 * 179.97438 * 21 20 19 46 46 H 1.07997 * 125.78830 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1879 6 6 2.1458 -2.9168 2.4369 7 6 1.7405 -4.3910 2.3759 8 7 2.2312 -5.0837 3.5748 9 6 2.0715 -6.5382 3.4448 10 6 3.0641 -7.0647 2.4404 11 1 3.7879 -6.3978 1.9958 12 6 3.0481 -8.3979 2.0891 13 7 3.9145 -8.8575 1.2130 14 14 1.7957 -9.5513 2.8576 15 1 0.5663 -9.5731 2.0248 16 1 2.3655 -10.9204 2.9347 17 1 1.4595 -9.0774 4.2242 18 6 1.5589 -4.5862 4.7825 19 6 2.3818 -4.9360 5.9956 20 6 3.3477 -4.1728 6.5378 21 6 3.8525 -4.8815 7.6522 22 6 3.1644 -6.0351 7.7247 23 8 2.2710 -6.0601 6.7221 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3002 34 1 0.5490 -2.2724 1.1420 35 1 1.7115 -2.4575 3.3249 36 1 3.2321 -2.8400 2.4824 37 1 2.1745 -4.8506 1.4879 38 1 0.6542 -4.4676 2.3306 39 1 2.2470 -7.0109 4.4112 40 1 1.0596 -6.7640 3.1082 41 1 3.9030 -9.7953 0.9656 42 1 0.5745 -5.0465 4.8660 43 1 1.4495 -3.5036 4.7175 44 1 3.6747 -3.2045 6.1889 45 1 4.6395 -4.5585 8.3176 46 1 3.3036 -6.8079 8.4661 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308649247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:21 Heat of formation + Delta-G solvation = -8.924957 kcal Electronic energy + Delta-G solvation = -21921.070652 eV Core-core repulsion = 18811.586912 eV Total energy + Delta-G solvation = -3109.483741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10505 -37.73682 -36.68766 -33.13832 -32.68226 -32.28690 -30.22631 -28.50976 -27.28444 -26.89693 -24.71783 -22.93709 -21.34984 -20.83339 -20.57864 -19.96696 -19.51281 -17.12606 -16.69667 -15.72570 -15.60356 -15.04486 -14.74012 -14.35314 -14.23776 -14.06021 -13.71324 -13.43153 -12.80767 -12.57460 -12.40813 -12.36489 -12.32811 -12.20325 -11.93349 -11.83203 -11.57872 -11.38768 -11.18497 -11.11195 -10.69316 -10.64864 -10.57447 -10.48141 -10.10016 -9.87363 -9.83147 -9.50278 -9.26638 -8.54411 -8.06233 -7.45119 -6.02705 -3.99282 2.15591 3.02025 3.29518 3.37489 3.42474 3.43975 4.44865 4.60394 4.81694 4.88065 4.91744 5.11502 5.22021 5.29596 5.35277 5.40677 5.43349 5.49510 5.53423 5.58067 5.65948 5.71541 5.73625 5.77198 5.86106 5.94791 6.01689 6.03841 6.11960 6.16818 6.19922 6.26201 6.30897 6.36092 6.46350 6.50137 6.65662 6.72153 6.87101 6.89917 6.99484 7.57593 7.64551 7.85793 8.00194 8.66979 9.07074 9.59632 11.10487 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.004721 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.854242 B = 5929.577758 C = 7764.130152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.116 4.116 7 C 0.063 3.937 8 N -0.522 5.522 9 C 0.161 3.839 10 C -0.505 4.505 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.870 3.130 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.123 3.877 19 C 0.019 3.981 20 C -0.206 4.206 21 C -0.215 4.215 22 C -0.051 4.051 23 O -0.175 6.175 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.031 0.969 40 H -0.014 1.014 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.097 0.903 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 15.942 5.083 17.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.064 4.064 8 N -0.246 5.246 9 C 0.035 3.965 10 C -0.543 4.543 11 H 0.099 0.901 12 C -0.132 4.132 13 N -0.540 5.540 14 Si 0.698 3.302 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.005 4.005 19 C -0.032 4.032 20 C -0.226 4.226 21 C -0.235 4.235 22 C -0.119 4.119 23 O -0.070 6.070 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.004 0.996 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.115 0.885 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.353 15.629 4.964 17.250 hybrid contribution -1.148 -0.928 0.431 1.537 sum -6.501 14.701 5.396 16.956 Atomic orbital electron populations 1.21892 0.95505 1.01984 1.01221 1.21143 0.95791 0.95923 0.98929 1.21844 1.00934 0.96291 1.01369 1.21640 1.00818 0.95405 0.97163 1.21614 1.00821 0.94553 0.98793 1.21665 1.01883 0.95015 0.96854 1.22053 0.96516 0.93187 0.94670 1.61953 1.55615 1.07202 0.99837 1.20257 0.95311 0.82949 0.98019 1.20998 1.16251 0.94587 1.22477 0.90074 1.24870 0.95620 0.97910 0.94808 1.69891 1.36226 1.14958 1.32891 0.86927 0.82000 0.80732 0.80577 1.20335 1.21137 1.19068 1.20587 0.93216 1.00235 0.86422 1.22409 1.00686 0.85091 0.95026 1.21412 0.99868 1.02623 0.98671 1.21730 1.04027 0.96316 1.01401 1.23884 0.93709 1.00544 0.93758 1.84053 1.49862 1.38534 1.34576 0.92940 0.93193 0.92224 0.91231 0.92764 0.93048 0.92901 0.92313 0.91992 0.91753 0.92160 0.92841 0.91172 0.88979 0.96125 0.95088 0.99648 0.92725 0.94104 0.88478 0.83924 0.84019 0.78779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 2 C -0.10 -0.95 2.92 -90.62 -0.26 -1.21 16 3 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 4 C -0.11 -1.18 4.68 -26.73 -0.13 -1.31 16 5 C -0.12 -1.46 4.97 -26.73 -0.13 -1.60 16 6 C -0.12 -1.67 5.19 -26.73 -0.14 -1.81 16 7 C 0.06 1.15 4.81 -3.82 -0.02 1.13 16 8 N -0.52 -10.85 4.37 -237.51 -1.04 -11.89 16 9 C 0.16 3.99 3.62 -4.98 -0.02 3.97 16 10 C -0.50 -14.54 8.94 -34.44 -0.31 -14.85 16 11 H 0.08 2.54 7.92 -52.49 -0.42 2.13 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 14 Si 0.87 22.00 27.39 -169.99 -4.66 17.35 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.61 6.66 56.52 0.38 -6.23 16 18 C 0.12 2.16 5.38 -4.98 -0.03 2.13 16 19 C 0.02 0.34 6.23 -35.62 -0.22 0.12 16 20 C -0.21 -3.39 10.81 -39.70 -0.43 -3.82 16 21 C -0.22 -3.24 10.91 -39.70 -0.43 -3.67 16 22 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 23 O -0.17 -3.32 9.99 5.69 0.06 -3.26 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 35 H 0.05 0.70 6.25 -51.93 -0.32 0.37 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.92 7.15 -51.93 -0.37 1.55 16 38 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 39 H 0.03 0.81 6.14 -51.93 -0.32 0.50 16 40 H -0.01 -0.35 7.27 -51.93 -0.38 -0.73 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 43 H 0.10 1.41 5.88 -51.93 -0.31 1.10 16 44 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 45 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -31.77 364.50 -8.84 -40.61 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.29 Total: 0.10 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.18 Total: -21.30 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.27 Total: -38.99 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.06 Total: -3.26 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.66 Total: 17.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.77 -8.84 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308649247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.687 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds