Wall clock time and date at job start Tue Mar 31 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32997 * 119.99932 * 2 1 4 4 C 1.47101 * 119.99812 * 173.24712 * 3 2 1 5 5 O 1.21611 * 120.00403 * 358.62534 * 4 3 2 6 6 N 1.34783 * 119.99498 * 178.62881 * 4 3 2 7 7 C 1.46504 * 119.99415 * 179.97438 * 6 4 3 8 8 H 1.08998 * 110.01942 * 325.06521 * 7 6 4 9 9 C 1.53879 * 110.02934 * 86.45904 * 7 6 4 10 10 C 1.54262 * 106.60006 * 119.28191 * 9 7 6 11 11 C 1.54893 * 104.19532 * 23.60762 * 10 9 7 12 12 H 1.08999 * 110.75315 * 80.55780 * 11 10 9 13 13 C 1.50704 * 110.75500 * 203.74296 * 11 10 9 14 14 H 1.08003 * 119.99836 * 118.54417 * 13 11 10 15 15 C 1.37872 * 119.99768 * 298.54679 * 13 11 10 16 16 N 1.31519 * 119.99956 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 120.00482 * 359.97438 * 15 13 11 18 18 H 1.48507 * 109.46953 * 89.99988 * 17 15 13 19 19 H 1.48500 * 109.47319 * 209.99954 * 17 15 13 20 20 H 1.48501 * 109.47139 * 330.00120 * 17 15 13 21 21 C 1.54270 * 110.02857 * 203.62024 * 7 6 4 22 22 C 1.50699 * 120.00059 * 180.02562 * 2 1 3 23 23 C 1.52998 * 109.47206 * 248.50594 * 22 2 1 24 24 C 1.53001 * 109.46957 * 128.50785 * 22 2 1 25 25 C 1.52999 * 109.47074 * 8.50873 * 22 2 1 26 26 H 1.08998 * 109.47435 * 269.99704 * 1 2 3 27 27 H 1.09001 * 109.47444 * 29.99882 * 1 2 3 28 28 H 1.09004 * 109.47119 * 149.99916 * 1 2 3 29 29 H 1.08004 * 119.99663 * 353.24799 * 3 2 1 30 30 H 0.96997 * 120.00341 * 0.02562 * 6 4 3 31 31 H 1.09000 * 110.02902 * 238.57073 * 9 7 6 32 32 H 1.08997 * 110.03113 * 359.94164 * 9 7 6 33 33 H 1.08998 * 110.48657 * 142.28572 * 10 9 7 34 34 H 1.09003 * 110.48508 * 264.93091 * 10 9 7 35 35 H 0.96995 * 120.00185 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.48414 * 335.78410 * 21 7 6 37 37 H 1.08995 * 110.48422 * 98.43280 * 21 7 6 38 38 H 1.09000 * 109.46715 * 333.05176 * 23 22 2 39 39 H 1.08994 * 109.47027 * 93.05080 * 23 22 2 40 40 H 1.09001 * 109.47221 * 213.05028 * 23 22 2 41 41 H 1.08998 * 109.47469 * 141.47351 * 24 22 2 42 42 H 1.09001 * 109.47019 * 261.47314 * 24 22 2 43 43 H 1.09000 * 109.47320 * 21.47227 * 24 22 2 44 44 H 1.09001 * 109.47178 * 299.99756 * 25 22 2 45 45 H 1.08998 * 109.47089 * 60.00237 * 25 22 2 46 46 H 1.08999 * 109.47097 * 180.02562 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6353 1.1562 0.1498 5 8 4.2345 0.1085 0.2987 6 7 4.3120 2.3215 0.1221 7 6 5.7693 2.3259 0.2718 8 1 6.0760 1.5390 0.9608 9 6 6.4405 2.1189 -1.0973 10 6 7.2985 3.3733 -1.3617 11 6 7.5802 3.9453 0.0499 12 1 8.3965 3.4052 0.5297 13 6 7.8873 5.4189 -0.0224 14 1 7.2511 6.1286 0.4855 15 6 8.9803 5.8610 -0.7371 16 7 9.2481 7.1471 -0.8007 17 14 10.0810 4.6334 -1.6151 18 1 9.5782 4.4168 -2.9956 19 1 11.4673 5.1628 -1.6706 20 1 10.0724 3.3447 -0.8773 21 6 6.2429 3.6990 0.7916 22 6 2.2605 -1.3051 -0.0006 23 6 2.9732 -1.4831 1.3415 24 6 3.2933 -1.2971 -1.1294 25 6 1.2800 -2.4600 -0.2145 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6375 2.0839 -0.1100 30 1 3.8340 3.1572 0.0037 31 1 7.0735 1.2319 -1.0725 32 1 5.6819 2.0142 -1.8730 33 1 8.2310 3.1005 -1.8558 34 1 6.7444 4.0949 -1.9621 35 1 10.0172 7.4581 -1.3031 36 1 5.5184 4.4731 0.5389 37 1 6.4051 3.6638 1.8689 38 1 3.1827 -0.5048 1.7741 39 1 2.3356 -2.0509 2.0190 40 1 3.9090 -2.0203 1.1875 41 1 4.2068 -1.7849 -0.7895 42 1 2.8942 -1.8329 -1.9907 43 1 3.5145 -0.2680 -1.4122 44 1 0.5442 -2.4656 0.5897 45 1 0.7723 -2.3331 -1.1707 46 1 1.8249 -3.4040 -0.2145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326574333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:22 Heat of formation + Delta-G solvation = -14.328607 kcal Electronic energy + Delta-G solvation = -22775.925316 eV Core-core repulsion = 19666.207255 eV Total energy + Delta-G solvation = -3109.718061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55119 -38.20413 -36.58667 -33.76667 -32.65813 -31.92551 -29.18530 -28.44037 -27.66973 -27.13367 -26.12083 -23.67424 -22.31710 -20.84773 -19.73833 -19.32509 -17.70456 -17.00174 -16.73197 -15.65345 -15.31025 -15.01595 -14.57880 -14.53437 -14.30596 -13.92898 -13.29010 -13.03676 -12.86288 -12.63934 -12.59406 -12.48193 -12.36852 -11.99725 -11.91826 -11.70175 -11.32530 -10.97554 -10.79489 -10.75489 -10.70420 -10.53834 -10.42939 -10.09067 -9.92695 -9.76067 -9.43737 -9.21737 -9.09005 -9.01781 -8.55119 -8.44298 -6.07690 -4.06753 1.36606 3.29875 3.39292 3.41402 3.46761 3.55730 4.42615 4.47179 4.61274 5.01571 5.03562 5.19317 5.21493 5.26508 5.32076 5.35157 5.42607 5.47549 5.59144 5.61493 5.62782 5.71060 5.88711 5.91412 5.95159 6.10906 6.16158 6.20029 6.21142 6.31629 6.37422 6.45640 6.48031 6.51305 6.55338 6.60751 6.66310 6.73831 6.86140 7.05599 7.12457 7.52493 7.76164 7.86964 8.50972 8.54534 8.95439 9.55569 11.05572 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.003661 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.410470 B = 7645.322732 C = 7953.976671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 C -0.229 4.229 4 C 0.528 3.472 5 O -0.525 6.525 6 N -0.716 5.716 7 C 0.140 3.860 8 H 0.082 0.918 9 C -0.129 4.129 10 C -0.130 4.130 11 C 0.015 3.985 12 H 0.034 0.966 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.903 5.903 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.110 4.110 22 C -0.030 4.030 23 C -0.109 4.109 24 C -0.111 4.111 25 C -0.143 4.143 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.397 0.603 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.246 -15.790 0.947 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.028 4.028 3 C -0.250 4.250 4 C 0.318 3.682 5 O -0.405 6.405 6 N -0.367 5.367 7 C 0.036 3.964 8 H 0.100 0.900 9 C -0.168 4.168 10 C -0.168 4.168 11 C -0.004 4.004 12 H 0.052 0.948 13 C -0.548 4.548 14 H 0.091 0.909 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.190 1.190 21 C -0.148 4.148 22 C -0.030 4.030 23 C -0.166 4.166 24 C -0.168 4.168 25 C -0.200 4.200 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.231 0.769 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.672 -16.387 0.987 23.398 hybrid contribution 0.415 0.074 -0.717 0.831 sum -16.257 -16.312 0.270 23.031 Atomic orbital electron populations 1.21083 0.91510 1.03279 1.02771 1.22586 0.95467 0.94630 0.90106 1.22410 0.93839 0.98600 1.10150 1.18429 0.88015 0.83860 0.77917 1.90902 1.71089 1.29979 1.48541 1.46232 1.08347 1.08634 1.73443 1.21776 0.78005 0.99533 0.97093 0.90003 1.22540 0.98896 0.98943 0.96383 1.22817 0.97853 0.95419 1.00748 1.20056 0.92535 0.97070 0.90774 0.94790 1.20981 1.11624 0.90018 1.32175 0.90863 1.24992 0.97159 0.94898 0.96039 1.69903 1.28551 1.13486 1.42181 0.86894 0.79526 0.81915 0.80475 1.20472 1.22295 1.18960 1.22564 0.99388 0.93427 0.99423 1.19612 0.94537 0.90920 0.97951 1.21902 0.98787 1.01900 0.93991 1.22091 0.97572 1.02317 0.94813 1.22090 0.98738 0.98129 1.01058 0.90462 0.91350 0.90658 0.85904 0.76859 0.92410 0.92551 0.93654 0.91541 0.92698 0.91437 0.92325 0.91686 0.95252 0.92207 0.91865 0.95546 0.91957 0.92714 0.92745 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.29 36.00 0.33 -0.62 16 2 C -0.03 -0.27 4.92 -101.17 -0.50 -0.77 16 3 C -0.23 -2.56 9.04 -37.81 -0.34 -2.90 16 4 C 0.53 7.35 5.87 -12.66 -0.07 7.28 16 5 O -0.53 -8.24 8.03 5.27 0.04 -8.20 16 6 N -0.72 -10.10 4.99 -53.89 -0.27 -10.37 16 7 C 0.14 2.34 3.23 -66.81 -0.22 2.13 16 8 H 0.08 1.43 7.61 -51.93 -0.39 1.03 16 9 C -0.13 -2.30 6.59 -25.61 -0.17 -2.47 16 10 C -0.13 -2.75 5.08 -25.07 -0.13 -2.88 16 11 C 0.01 0.34 2.30 -89.77 -0.21 0.13 16 12 H 0.03 0.80 7.37 -51.93 -0.38 0.42 16 13 C -0.51 -13.98 9.12 -34.44 -0.31 -14.29 16 14 H 0.07 2.16 8.03 -52.48 -0.42 1.74 16 15 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 16 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 17 Si 0.88 21.83 24.46 -169.99 -4.16 17.67 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.29 6.48 56.52 0.37 -5.93 16 21 C -0.11 -2.06 5.94 -25.07 -0.15 -2.20 16 22 C -0.03 -0.33 0.75 -155.66 -0.12 -0.45 16 23 C -0.11 -1.33 7.58 37.16 0.28 -1.05 16 24 C -0.11 -1.42 7.58 37.16 0.28 -1.14 16 25 C -0.14 -1.25 6.74 37.16 0.25 -1.00 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 28 H 0.07 0.49 5.91 -51.93 -0.31 0.18 16 29 H 0.12 1.12 8.04 -52.48 -0.42 0.69 16 30 H 0.40 4.86 8.32 -40.82 -0.34 4.52 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.04 0.99 4.91 -51.93 -0.25 0.73 16 34 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 1.24 7.63 -51.93 -0.40 0.85 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.90 5.59 -51.93 -0.29 0.61 16 39 H 0.03 0.31 7.78 -51.93 -0.40 -0.09 16 40 H 0.06 0.79 7.03 -51.93 -0.37 0.43 16 41 H 0.06 0.89 6.70 -51.93 -0.35 0.54 16 42 H 0.03 0.30 7.71 -51.93 -0.40 -0.10 16 43 H 0.06 0.89 4.93 -51.93 -0.26 0.64 16 44 H 0.05 0.42 7.53 -51.93 -0.39 0.03 16 45 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -30.01 338.92 -7.53 -37.54 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.86 Total: 3.22 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.16 Total: -18.31 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.50 Total: -37.02 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.04 Total: -8.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.16 Total: 17.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.01 -7.53 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.213 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds