Wall clock time and date at job start Tue Mar 31 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32997 * 119.99932 * 2 1 4 4 C 1.47101 * 119.99812 * 173.24712 * 3 2 1 5 5 O 1.21611 * 120.00403 * 358.62534 * 4 3 2 6 6 N 1.34783 * 119.99498 * 178.62881 * 4 3 2 7 7 C 1.46504 * 119.99415 * 179.97438 * 6 4 3 8 8 H 1.08998 * 110.01942 * 325.06521 * 7 6 4 9 9 C 1.53879 * 110.02934 * 86.45904 * 7 6 4 10 10 C 1.54262 * 106.60006 * 119.28191 * 9 7 6 11 11 C 1.54893 * 104.19532 * 23.60762 * 10 9 7 12 12 H 1.08999 * 110.75315 * 80.55780 * 11 10 9 13 13 C 1.50704 * 110.75500 * 203.74296 * 11 10 9 14 14 H 1.08003 * 119.99836 * 118.54417 * 13 11 10 15 15 C 1.37872 * 119.99768 * 298.54679 * 13 11 10 16 16 N 1.31519 * 119.99956 * 179.97438 * 15 13 11 17 17 Si 1.86798 * 120.00482 * 359.97438 * 15 13 11 18 18 H 1.48507 * 109.46953 * 89.99988 * 17 15 13 19 19 H 1.48500 * 109.47319 * 209.99954 * 17 15 13 20 20 H 1.48501 * 109.47139 * 330.00120 * 17 15 13 21 21 C 1.54270 * 110.02857 * 203.62024 * 7 6 4 22 22 C 1.50699 * 120.00059 * 180.02562 * 2 1 3 23 23 C 1.52998 * 109.47206 * 248.50594 * 22 2 1 24 24 C 1.53001 * 109.46957 * 128.50785 * 22 2 1 25 25 C 1.52999 * 109.47074 * 8.50873 * 22 2 1 26 26 H 1.08998 * 109.47435 * 269.99704 * 1 2 3 27 27 H 1.09001 * 109.47444 * 29.99882 * 1 2 3 28 28 H 1.09004 * 109.47119 * 149.99916 * 1 2 3 29 29 H 1.08004 * 119.99663 * 353.24799 * 3 2 1 30 30 H 0.96997 * 120.00341 * 0.02562 * 6 4 3 31 31 H 1.09000 * 110.02902 * 238.57073 * 9 7 6 32 32 H 1.08997 * 110.03113 * 359.94164 * 9 7 6 33 33 H 1.08998 * 110.48657 * 142.28572 * 10 9 7 34 34 H 1.09003 * 110.48508 * 264.93091 * 10 9 7 35 35 H 0.96995 * 120.00185 * 179.97438 * 16 15 13 36 36 H 1.08996 * 110.48414 * 335.78410 * 21 7 6 37 37 H 1.08995 * 110.48422 * 98.43280 * 21 7 6 38 38 H 1.09000 * 109.46715 * 333.05176 * 23 22 2 39 39 H 1.08994 * 109.47027 * 93.05080 * 23 22 2 40 40 H 1.09001 * 109.47221 * 213.05028 * 23 22 2 41 41 H 1.08998 * 109.47469 * 141.47351 * 24 22 2 42 42 H 1.09001 * 109.47019 * 261.47314 * 24 22 2 43 43 H 1.09000 * 109.47320 * 21.47227 * 24 22 2 44 44 H 1.09001 * 109.47178 * 299.99756 * 25 22 2 45 45 H 1.08998 * 109.47089 * 60.00237 * 25 22 2 46 46 H 1.08999 * 109.47097 * 180.02562 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6353 1.1562 0.1498 5 8 4.2345 0.1085 0.2987 6 7 4.3120 2.3215 0.1221 7 6 5.7693 2.3259 0.2718 8 1 6.0760 1.5390 0.9608 9 6 6.4405 2.1189 -1.0973 10 6 7.2985 3.3733 -1.3617 11 6 7.5802 3.9453 0.0499 12 1 8.3965 3.4052 0.5297 13 6 7.8873 5.4189 -0.0224 14 1 7.2511 6.1286 0.4855 15 6 8.9803 5.8610 -0.7371 16 7 9.2481 7.1471 -0.8007 17 14 10.0810 4.6334 -1.6151 18 1 9.5782 4.4168 -2.9956 19 1 11.4673 5.1628 -1.6706 20 1 10.0724 3.3447 -0.8773 21 6 6.2429 3.6990 0.7916 22 6 2.2605 -1.3051 -0.0006 23 6 2.9732 -1.4831 1.3415 24 6 3.2933 -1.2971 -1.1294 25 6 1.2800 -2.4600 -0.2145 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6375 2.0839 -0.1100 30 1 3.8340 3.1572 0.0037 31 1 7.0735 1.2319 -1.0725 32 1 5.6819 2.0142 -1.8730 33 1 8.2310 3.1005 -1.8558 34 1 6.7444 4.0949 -1.9621 35 1 10.0172 7.4581 -1.3031 36 1 5.5184 4.4731 0.5389 37 1 6.4051 3.6638 1.8689 38 1 3.1827 -0.5048 1.7741 39 1 2.3356 -2.0509 2.0190 40 1 3.9090 -2.0203 1.1875 41 1 4.2068 -1.7849 -0.7895 42 1 2.8942 -1.8329 -1.9907 43 1 3.5145 -0.2680 -1.4122 44 1 0.5442 -2.4656 0.5897 45 1 0.7723 -2.3331 -1.1707 46 1 1.8249 -3.4040 -0.2145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326574333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:21 Heat of formation + Delta-G solvation = -32.126945 kcal Electronic energy + Delta-G solvation = -22776.697110 eV Core-core repulsion = 19666.207255 eV Total energy + Delta-G solvation = -3110.489855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58402 -39.52495 -37.76036 -35.21403 -34.13810 -33.21926 -30.38008 -29.85085 -29.02078 -28.11626 -27.01801 -25.47565 -23.29927 -21.94960 -21.19821 -20.96333 -18.91165 -18.63479 -17.83806 -16.93559 -16.87422 -16.27242 -15.94438 -15.61821 -15.24840 -15.07218 -14.82344 -14.20730 -14.19025 -14.05601 -13.79190 -13.45035 -13.41450 -13.27864 -12.88713 -12.84749 -12.55917 -12.53415 -12.30737 -11.92278 -11.81262 -11.71846 -11.58124 -11.56391 -11.53355 -11.38113 -11.24566 -11.05027 -10.69963 -10.28055 -9.97251 -9.61909 -8.29007 -6.31584 0.50438 1.32426 1.36272 1.46162 2.34035 2.44681 2.45683 3.06933 3.67434 3.76266 3.86964 3.91115 4.09458 4.20144 4.23126 4.46645 4.52829 4.61713 4.66163 4.68539 4.73386 4.80074 4.83724 4.89753 4.90470 4.94557 4.95932 4.97208 4.99732 5.11569 5.15977 5.23361 5.24972 5.26566 5.32723 5.40208 5.52413 5.55175 5.62881 5.63533 5.72893 5.79354 5.84971 6.32282 6.74694 6.79864 7.34139 7.47479 8.87722 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037962 B = 0.003661 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.410470 B = 7645.322732 C = 7953.976671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.017 4.017 3 C -0.244 4.244 4 C 0.523 3.477 5 O -0.547 6.547 6 N -0.714 5.714 7 C 0.155 3.845 8 H 0.077 0.923 9 C -0.119 4.119 10 C -0.127 4.127 11 C 0.007 3.993 12 H 0.030 0.970 13 C -0.510 4.510 14 H 0.038 0.962 15 C 0.014 3.986 16 N -0.951 5.951 17 Si 0.941 3.059 18 H -0.268 1.268 19 H -0.297 1.297 20 H -0.249 1.249 21 C -0.101 4.101 22 C -0.036 4.036 23 C -0.103 4.103 24 C -0.106 4.106 25 C -0.139 4.139 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.407 0.593 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.265 0.735 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.044 0.956 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.422 -18.005 0.498 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 C -0.264 4.264 4 C 0.315 3.685 5 O -0.428 6.428 6 N -0.366 5.366 7 C 0.049 3.951 8 H 0.096 0.904 9 C -0.158 4.158 10 C -0.164 4.164 11 C -0.012 4.012 12 H 0.048 0.952 13 C -0.548 4.548 14 H 0.056 0.944 15 C -0.183 4.183 16 N -0.592 5.592 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.225 1.225 20 H -0.173 1.173 21 C -0.139 4.139 22 C -0.036 4.036 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.196 4.196 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.163 0.837 30 H 0.243 0.757 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.881 -18.613 0.543 26.519 hybrid contribution 1.051 0.777 -0.511 1.404 sum -17.830 -17.836 0.032 25.220 Atomic orbital electron populations 1.21158 0.88865 1.04544 1.03888 1.22875 0.97211 0.93678 0.88120 1.22447 0.92049 1.00125 1.11817 1.18929 0.89256 0.83198 0.77139 1.90907 1.71808 1.30655 1.49413 1.46101 1.07135 1.09508 1.73835 1.21397 0.79732 0.97759 0.96176 0.90449 1.22451 0.98723 0.97322 0.97257 1.22674 0.98157 0.96559 0.99057 1.20033 0.94485 0.93911 0.92820 0.95222 1.21291 1.10664 0.92079 1.30782 0.94374 1.25807 0.98862 0.96480 0.97142 1.70042 1.29611 1.15618 1.43881 0.85945 0.77325 0.80142 0.79866 1.19312 1.22463 1.17253 1.22418 0.97365 0.94760 0.99376 1.19654 0.94747 0.92716 0.96462 1.21807 0.98497 1.00682 0.95031 1.22007 0.97444 1.01007 0.95862 1.22059 0.98417 0.96827 1.02305 0.89199 0.90110 0.89441 0.83679 0.75711 0.91933 0.91525 0.94124 0.92516 0.92645 0.91390 0.91789 0.93618 0.93680 0.94011 0.93883 0.94423 0.93688 0.91169 0.91577 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 9.29 71.23 0.66 -0.70 16 2 C -0.02 -0.30 4.92 -17.62 -0.09 -0.39 16 3 C -0.24 -4.89 9.04 23.43 0.21 -4.67 16 4 C 0.52 13.88 5.87 86.57 0.51 14.38 16 5 O -0.55 -16.82 8.03 -4.07 -0.03 -16.85 16 6 N -0.71 -19.13 4.99 -442.67 -2.21 -21.34 16 7 C 0.15 4.98 3.23 45.72 0.15 5.13 16 8 H 0.08 2.61 7.61 -2.39 -0.02 2.59 16 9 C -0.12 -4.05 6.59 31.32 0.21 -3.84 16 10 C -0.13 -5.19 5.08 31.67 0.16 -5.03 16 11 C 0.01 0.30 2.30 -10.25 -0.02 0.28 16 12 H 0.03 1.37 7.37 -2.39 -0.02 1.36 16 13 C -0.51 -28.55 9.12 25.60 0.23 -28.32 16 14 H 0.04 2.34 8.03 -2.91 -0.02 2.31 16 15 C 0.01 0.81 5.46 84.65 0.46 1.27 16 16 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 17 Si 0.94 45.07 24.46 68.60 1.68 46.74 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.25 -11.15 6.48 99.48 0.64 -10.51 16 21 C -0.10 -3.72 5.94 31.67 0.19 -3.54 16 22 C -0.04 -0.72 0.75 -52.93 -0.04 -0.76 16 23 C -0.10 -2.41 7.58 71.98 0.55 -1.86 16 24 C -0.11 -2.60 7.58 71.98 0.55 -2.05 16 25 C -0.14 -2.00 6.74 71.98 0.49 -1.52 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.70 8.06 -2.39 -0.02 0.68 16 28 H 0.09 0.75 5.91 -2.39 -0.01 0.73 16 29 H 0.15 2.20 8.04 -2.91 -0.02 2.17 16 30 H 0.41 9.29 8.32 -92.71 -0.77 8.52 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.14 7.92 -2.39 -0.02 2.13 16 33 H 0.04 1.69 4.91 -2.39 -0.01 1.68 16 34 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 35 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.07 2.48 7.63 -2.39 -0.02 2.46 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.04 1.23 5.59 -2.39 -0.01 1.22 16 39 H 0.04 0.88 7.78 -2.39 -0.02 0.86 16 40 H 0.04 1.10 7.03 -2.39 -0.02 1.08 16 41 H 0.04 1.20 6.70 -2.39 -0.02 1.18 16 42 H 0.04 0.80 7.71 -2.39 -0.02 0.78 16 43 H 0.04 1.24 4.93 -2.39 -0.01 1.23 16 44 H 0.07 0.81 7.53 -2.39 -0.02 0.79 16 45 H 0.07 0.81 7.35 -2.39 -0.02 0.79 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.14 338.92 4.07 -62.08 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.12 Total: 20.04 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 4.21 Total: -31.62 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.91 Total: -80.39 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.03 Total: -16.85 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.68 Total: 46.74 kcal Total: -66.14 4.07 -62.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.948 kcal (2) G-P(sol) polarization free energy of solvation -66.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds