Wall clock time and date at job start Tue Mar 31 2020 02:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 120.00411 * 2 1 4 4 C 1.47105 * 119.99677 * 353.10563 * 3 2 1 5 5 O 1.21609 * 119.99982 * 353.71249 * 4 3 2 6 6 N 1.34773 * 119.99621 * 173.71165 * 4 3 2 7 7 C 1.46503 * 120.00050 * 180.27584 * 6 4 3 8 8 H 1.09005 * 110.01586 * 325.42648 * 7 6 4 9 9 C 1.53879 * 110.03245 * 86.81416 * 7 6 4 10 10 C 1.54267 * 106.59480 * 119.28796 * 9 7 6 11 11 C 1.54884 * 104.19881 * 23.61131 * 10 9 7 12 12 H 1.09002 * 110.75777 * 80.55274 * 11 10 9 13 13 C 1.50694 * 110.76018 * 203.74385 * 11 10 9 14 14 H 1.07997 * 120.00396 * 118.54320 * 13 11 10 15 15 C 1.37879 * 119.99667 * 298.54615 * 13 11 10 16 16 N 1.31518 * 120.00206 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00142 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47037 * 89.99933 * 17 15 13 19 19 H 1.48500 * 109.47091 * 209.99993 * 17 15 13 20 20 H 1.48505 * 109.46936 * 330.00066 * 17 15 13 21 21 C 1.54259 * 110.03474 * 204.03688 * 7 6 4 22 22 C 1.50706 * 119.99369 * 179.97438 * 2 1 3 23 23 C 1.52999 * 109.46714 * 179.97438 * 22 2 1 24 24 C 1.52995 * 109.47465 * 299.99936 * 22 2 1 25 25 C 1.52994 * 109.47129 * 60.00437 * 22 2 1 26 26 H 1.08996 * 109.47390 * 84.47804 * 1 2 3 27 27 H 1.08995 * 109.47579 * 204.48607 * 1 2 3 28 28 H 1.09007 * 109.46856 * 324.48142 * 1 2 3 29 29 H 1.07994 * 119.99862 * 173.11104 * 3 2 1 30 30 H 0.97002 * 120.00142 * 359.97438 * 6 4 3 31 31 H 1.08994 * 110.03184 * 238.57471 * 9 7 6 32 32 H 1.08994 * 110.03017 * 359.95466 * 9 7 6 33 33 H 1.08999 * 110.47964 * 142.29178 * 10 9 7 34 34 H 1.09003 * 110.48289 * 264.93034 * 10 9 7 35 35 H 0.96999 * 120.00527 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.48828 * 335.77856 * 21 7 6 37 37 H 1.08997 * 110.48833 * 98.42497 * 21 7 6 38 38 H 1.09009 * 109.47001 * 60.00457 * 23 22 2 39 39 H 1.08998 * 109.47349 * 179.97438 * 23 22 2 40 40 H 1.08995 * 109.47386 * 300.00372 * 23 22 2 41 41 H 1.09007 * 109.47064 * 60.00268 * 24 22 2 42 42 H 1.08999 * 109.47171 * 179.97438 * 24 22 2 43 43 H 1.09000 * 109.47035 * 300.00726 * 24 22 2 44 44 H 1.09005 * 109.47411 * 59.99404 * 25 22 2 45 45 H 1.08999 * 109.47424 * 179.97438 * 25 22 2 46 46 H 1.09007 * 109.46957 * 299.99461 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4445 2.4211 -0.1529 5 8 0.2525 2.4135 -0.3935 6 7 2.0991 3.5923 -0.0264 7 6 1.3735 4.8566 -0.1727 8 1 0.5871 4.7511 -0.9202 9 6 0.7647 5.2742 1.1774 10 6 1.3898 6.6372 1.5398 11 6 1.8313 7.2269 0.1774 12 1 0.9848 7.6768 -0.3414 13 6 2.9369 8.2338 0.3643 14 1 3.9029 8.0653 -0.0882 15 6 2.7150 9.3701 1.1130 16 7 3.6800 10.2486 1.2766 17 14 1.0439 9.6618 1.8952 18 1 1.0219 9.0626 3.2538 19 1 0.7917 11.1219 1.9940 20 1 -0.0103 9.0328 1.0595 21 6 2.3469 5.9800 -0.5849 22 6 2.2604 -1.3052 0.0006 23 6 3.7646 -1.0257 -0.0002 24 6 1.8908 -2.1070 1.2501 25 6 1.8908 -2.1080 -1.2483 26 1 -0.3634 0.0989 -1.0228 27 1 -0.3634 -0.9352 0.4259 28 1 -0.3633 0.8365 0.5971 29 1 3.2461 1.1550 0.1122 30 1 3.0499 3.5983 0.1658 31 1 -0.3169 5.3722 1.0849 32 1 1.0085 4.5359 1.9412 33 1 0.6496 7.2825 2.0130 34 1 2.2513 6.5001 2.1934 35 1 3.5238 11.0482 1.8031 36 1 3.3632 5.7370 -0.2749 37 1 2.3047 6.1455 -1.6614 38 1 4.0283 -0.4536 0.8894 39 1 4.3096 -1.9697 0.0007 40 1 4.0277 -0.4547 -0.8906 41 1 0.8190 -2.3061 1.2502 42 1 2.4353 -3.0512 1.2503 43 1 2.1540 -1.5350 2.1398 44 1 2.1541 -1.5368 -2.1386 45 1 2.4360 -3.0518 -1.2482 46 1 0.8191 -2.3071 -1.2482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326574334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:26 Heat of formation + Delta-G solvation = -46.258524 kcal Electronic energy + Delta-G solvation = -22139.914650 eV Core-core repulsion = 19028.812004 eV Total energy + Delta-G solvation = -3111.102646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98155 -38.42066 -37.12603 -33.71355 -32.37005 -32.04639 -29.18217 -28.45170 -27.70689 -27.57114 -26.15716 -23.78394 -22.77470 -20.55041 -19.76540 -19.22712 -17.72142 -17.06114 -16.68497 -15.58705 -15.36505 -15.08369 -14.73275 -14.47072 -14.26155 -14.02539 -13.53779 -13.16979 -12.79212 -12.70446 -12.54009 -12.41495 -12.36079 -12.31442 -11.99296 -11.89994 -11.51813 -11.29768 -11.23421 -11.07504 -10.94784 -10.84518 -10.45341 -10.09907 -9.94417 -9.76199 -9.45203 -9.31713 -9.21446 -9.01593 -8.58945 -8.51732 -6.07391 -4.06423 1.39097 3.30181 3.39556 3.41841 3.45367 3.52757 4.34075 4.42948 4.46963 4.65045 4.93531 4.98265 5.17774 5.22097 5.29648 5.30354 5.39419 5.43358 5.47528 5.49632 5.55399 5.58183 5.61543 5.74711 5.76496 5.80497 5.92783 5.99130 6.03736 6.14053 6.18844 6.32164 6.44443 6.48638 6.50632 6.51572 6.60911 6.72934 6.85952 7.05362 7.11651 7.52779 7.76349 7.85529 8.50383 8.53180 8.95763 9.55853 11.05839 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.003243 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.952798 B = 8632.067820 C = 8892.601272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.231 4.231 4 C 0.540 3.460 5 O -0.547 6.547 6 N -0.716 5.716 7 C 0.138 3.862 8 H 0.082 0.918 9 C -0.130 4.130 10 C -0.130 4.130 11 C 0.015 3.985 12 H 0.034 0.966 13 C -0.510 4.510 14 H 0.073 0.927 15 C 0.071 3.929 16 N -0.903 5.903 17 Si 0.882 3.118 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.264 1.264 21 C -0.110 4.110 22 C -0.040 4.040 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.398 0.602 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 -24.395 -1.686 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.027 4.027 3 C -0.252 4.252 4 C 0.329 3.671 5 O -0.428 6.428 6 N -0.366 5.366 7 C 0.034 3.966 8 H 0.100 0.900 9 C -0.169 4.169 10 C -0.168 4.168 11 C -0.004 4.004 12 H 0.052 0.948 13 C -0.548 4.548 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.712 3.288 18 H -0.205 1.205 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.148 4.148 22 C -0.041 4.041 23 C -0.204 4.204 24 C -0.197 4.197 25 C -0.194 4.194 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.241 -24.199 -1.783 24.480 hybrid contribution -0.247 0.366 0.700 0.828 sum -3.488 -23.833 -1.083 24.111 Atomic orbital electron populations 1.21112 0.90973 1.02185 1.03453 1.22416 0.96505 0.93373 0.90418 1.22612 1.00592 0.92122 1.09872 1.18583 0.87028 0.84394 0.77069 1.90727 1.15150 1.87740 1.49190 1.46223 1.12701 1.05769 1.71869 1.21806 0.95094 0.82241 0.97474 0.89960 1.22547 0.99668 0.98227 0.96411 1.22818 0.99220 0.94070 1.00714 1.20071 0.96734 0.92599 0.91043 0.94759 1.20976 0.98319 1.03285 1.32193 0.90847 1.24993 0.96429 0.95729 0.95935 1.69901 1.32416 1.11141 1.40664 0.86896 0.85413 0.76345 0.80172 1.20468 1.22304 1.18937 1.22579 0.97979 0.94409 0.99821 1.19713 0.95031 0.92692 0.96619 1.22001 0.94117 1.01910 1.02410 1.21878 1.01824 0.99502 0.96521 1.21826 1.01825 0.99377 0.96418 0.90581 0.92946 0.89177 0.85328 0.76719 0.92358 0.92534 0.93611 0.91500 0.92697 0.91400 0.92258 0.92032 0.92245 0.91981 0.92138 0.92184 0.92317 0.92325 0.92140 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 7.81 36.01 0.28 -1.09 16 2 C -0.03 -0.27 4.90 -101.16 -0.50 -0.76 16 3 C -0.23 -2.68 8.97 -37.80 -0.34 -3.02 16 4 C 0.54 8.06 7.60 -12.67 -0.10 7.96 16 5 O -0.55 -9.71 12.95 5.27 0.07 -9.64 16 6 N -0.72 -10.52 4.98 -53.90 -0.27 -10.79 16 7 C 0.14 2.38 3.23 -66.81 -0.22 2.17 16 8 H 0.08 1.49 7.59 -51.93 -0.39 1.10 16 9 C -0.13 -2.37 6.59 -25.61 -0.17 -2.54 16 10 C -0.13 -2.77 5.08 -25.07 -0.13 -2.89 16 11 C 0.01 0.34 2.29 -89.74 -0.21 0.13 16 12 H 0.03 0.81 7.37 -51.93 -0.38 0.43 16 13 C -0.51 -14.00 9.12 -34.44 -0.31 -14.32 16 14 H 0.07 2.17 8.03 -52.49 -0.42 1.75 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 17 Si 0.88 21.87 24.46 -169.99 -4.16 17.71 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.26 -6.30 6.48 56.52 0.37 -5.94 16 21 C -0.11 -2.08 5.95 -25.03 -0.15 -2.23 16 22 C -0.04 -0.32 0.87 -155.66 -0.14 -0.46 16 23 C -0.15 -1.06 7.14 37.16 0.27 -0.79 16 24 C -0.14 -0.99 8.31 37.15 0.31 -0.68 16 25 C -0.14 -0.98 8.31 37.15 0.31 -0.68 16 26 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 27 H 0.05 0.48 6.65 -51.93 -0.35 0.13 16 28 H 0.09 1.24 6.12 -51.93 -0.32 0.93 16 29 H 0.13 1.22 5.78 -52.49 -0.30 0.92 16 30 H 0.40 4.99 8.33 -40.82 -0.34 4.65 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.05 1.00 4.91 -51.93 -0.25 0.75 16 34 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 0.44 7.39 -51.92 -0.38 0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.46 7.61 -51.93 -0.40 0.06 16 41 H 0.06 0.42 6.80 -51.93 -0.35 0.07 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.42 7.76 -51.93 -0.40 0.02 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -30.95 349.96 -7.56 -38.51 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.07 Total: 2.89 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.18 Total: -17.27 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.50 Total: -37.47 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.16 Total: 17.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.95 -7.56 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.747 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds