Wall clock time and date at job start Tue Mar 31 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32992 * 120.00411 * 2 1 4 4 C 1.47105 * 119.99677 * 353.10563 * 3 2 1 5 5 O 1.21609 * 119.99982 * 353.71249 * 4 3 2 6 6 N 1.34773 * 119.99621 * 173.71165 * 4 3 2 7 7 C 1.46503 * 120.00050 * 180.27584 * 6 4 3 8 8 H 1.09005 * 110.01586 * 325.42648 * 7 6 4 9 9 C 1.53879 * 110.03245 * 86.81416 * 7 6 4 10 10 C 1.54267 * 106.59480 * 119.28796 * 9 7 6 11 11 C 1.54884 * 104.19881 * 23.61131 * 10 9 7 12 12 H 1.09002 * 110.75777 * 80.55274 * 11 10 9 13 13 C 1.50694 * 110.76018 * 203.74385 * 11 10 9 14 14 H 1.07997 * 120.00396 * 118.54320 * 13 11 10 15 15 C 1.37879 * 119.99667 * 298.54615 * 13 11 10 16 16 N 1.31518 * 120.00206 * 179.97438 * 15 13 11 17 17 Si 1.86803 * 120.00142 * 359.97438 * 15 13 11 18 18 H 1.48502 * 109.47037 * 89.99933 * 17 15 13 19 19 H 1.48500 * 109.47091 * 209.99993 * 17 15 13 20 20 H 1.48505 * 109.46936 * 330.00066 * 17 15 13 21 21 C 1.54259 * 110.03474 * 204.03688 * 7 6 4 22 22 C 1.50706 * 119.99369 * 179.97438 * 2 1 3 23 23 C 1.52999 * 109.46714 * 179.97438 * 22 2 1 24 24 C 1.52995 * 109.47465 * 299.99936 * 22 2 1 25 25 C 1.52994 * 109.47129 * 60.00437 * 22 2 1 26 26 H 1.08996 * 109.47390 * 84.47804 * 1 2 3 27 27 H 1.08995 * 109.47579 * 204.48607 * 1 2 3 28 28 H 1.09007 * 109.46856 * 324.48142 * 1 2 3 29 29 H 1.07994 * 119.99862 * 173.11104 * 3 2 1 30 30 H 0.97002 * 120.00142 * 359.97438 * 6 4 3 31 31 H 1.08994 * 110.03184 * 238.57471 * 9 7 6 32 32 H 1.08994 * 110.03017 * 359.95466 * 9 7 6 33 33 H 1.08999 * 110.47964 * 142.29178 * 10 9 7 34 34 H 1.09003 * 110.48289 * 264.93034 * 10 9 7 35 35 H 0.96999 * 120.00527 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.48828 * 335.77856 * 21 7 6 37 37 H 1.08997 * 110.48833 * 98.42497 * 21 7 6 38 38 H 1.09009 * 109.47001 * 60.00457 * 23 22 2 39 39 H 1.08998 * 109.47349 * 179.97438 * 23 22 2 40 40 H 1.08995 * 109.47386 * 300.00372 * 23 22 2 41 41 H 1.09007 * 109.47064 * 60.00268 * 24 22 2 42 42 H 1.08999 * 109.47171 * 179.97438 * 24 22 2 43 43 H 1.09000 * 109.47035 * 300.00726 * 24 22 2 44 44 H 1.09005 * 109.47411 * 59.99404 * 25 22 2 45 45 H 1.08999 * 109.47424 * 179.97438 * 25 22 2 46 46 H 1.09007 * 109.46957 * 299.99461 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4445 2.4211 -0.1529 5 8 0.2525 2.4135 -0.3935 6 7 2.0991 3.5923 -0.0264 7 6 1.3735 4.8566 -0.1727 8 1 0.5871 4.7511 -0.9202 9 6 0.7647 5.2742 1.1774 10 6 1.3898 6.6372 1.5398 11 6 1.8313 7.2269 0.1774 12 1 0.9848 7.6768 -0.3414 13 6 2.9369 8.2338 0.3643 14 1 3.9029 8.0653 -0.0882 15 6 2.7150 9.3701 1.1130 16 7 3.6800 10.2486 1.2766 17 14 1.0439 9.6618 1.8952 18 1 1.0219 9.0626 3.2538 19 1 0.7917 11.1219 1.9940 20 1 -0.0103 9.0328 1.0595 21 6 2.3469 5.9800 -0.5849 22 6 2.2604 -1.3052 0.0006 23 6 3.7646 -1.0257 -0.0002 24 6 1.8908 -2.1070 1.2501 25 6 1.8908 -2.1080 -1.2483 26 1 -0.3634 0.0989 -1.0228 27 1 -0.3634 -0.9352 0.4259 28 1 -0.3633 0.8365 0.5971 29 1 3.2461 1.1550 0.1122 30 1 3.0499 3.5983 0.1658 31 1 -0.3169 5.3722 1.0849 32 1 1.0085 4.5359 1.9412 33 1 0.6496 7.2825 2.0130 34 1 2.2513 6.5001 2.1934 35 1 3.5238 11.0482 1.8031 36 1 3.3632 5.7370 -0.2749 37 1 2.3047 6.1455 -1.6614 38 1 4.0283 -0.4536 0.8894 39 1 4.3096 -1.9697 0.0007 40 1 4.0277 -0.4547 -0.8906 41 1 0.8190 -2.3061 1.2502 42 1 2.4353 -3.0512 1.2503 43 1 2.1540 -1.5350 2.1398 44 1 2.1541 -1.5368 -2.1386 45 1 2.4360 -3.0518 -1.2482 46 1 0.8191 -2.3071 -1.2482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326574334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:25 Heat of formation + Delta-G solvation = -64.635208 kcal Electronic energy + Delta-G solvation = -22140.711522 eV Core-core repulsion = 19028.812004 eV Total energy + Delta-G solvation = -3111.899519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12245 -39.45513 -38.42214 -35.29170 -34.01487 -33.16076 -30.42257 -29.88917 -29.01705 -28.10003 -27.04028 -25.53560 -23.82291 -21.76908 -21.21812 -20.82527 -18.92777 -18.49698 -17.96579 -16.90262 -16.78634 -16.30569 -15.94095 -15.65022 -15.15258 -14.99183 -14.83952 -14.63697 -14.15923 -14.10080 -13.98307 -13.63724 -13.19431 -13.03637 -12.91023 -12.84816 -12.65741 -12.53490 -12.50026 -12.28861 -11.95524 -11.87040 -11.79868 -11.63139 -11.53980 -11.47205 -11.26033 -11.05118 -10.69892 -10.47259 -10.21232 -9.76917 -8.28591 -6.31205 0.45987 1.32916 1.36852 1.46722 2.34464 2.34616 2.38211 3.07266 3.59139 3.77141 3.83906 3.89001 4.08149 4.08437 4.17520 4.22669 4.43481 4.60391 4.64764 4.66626 4.72046 4.78832 4.79413 4.84769 4.89288 4.92651 4.93609 4.96692 5.02786 5.05918 5.10367 5.11315 5.18197 5.24254 5.26733 5.35141 5.39364 5.44849 5.62644 5.64325 5.65938 5.71739 5.78955 6.32517 6.71310 6.75366 7.34433 7.37076 8.88065 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.003243 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.952798 B = 8632.067820 C = 8892.601272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.014 4.014 3 C -0.244 4.244 4 C 0.536 3.464 5 O -0.580 6.580 6 N -0.711 5.711 7 C 0.150 3.850 8 H 0.077 0.923 9 C -0.121 4.121 10 C -0.126 4.126 11 C 0.007 3.993 12 H 0.030 0.970 13 C -0.510 4.510 14 H 0.039 0.961 15 C 0.014 3.986 16 N -0.951 5.951 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.298 1.298 20 H -0.248 1.248 21 C -0.101 4.101 22 C -0.039 4.039 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.151 0.849 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -27.064 -1.326 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.016 4.016 3 C -0.264 4.264 4 C 0.327 3.673 5 O -0.462 6.462 6 N -0.362 5.362 7 C 0.045 3.955 8 H 0.095 0.905 9 C -0.159 4.159 10 C -0.164 4.164 11 C -0.013 4.013 12 H 0.048 0.952 13 C -0.548 4.548 14 H 0.057 0.943 15 C -0.183 4.183 16 N -0.591 5.591 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.225 1.225 20 H -0.172 1.172 21 C -0.139 4.139 22 C -0.039 4.039 23 C -0.205 4.205 24 C -0.197 4.197 25 C -0.194 4.194 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.246 0.754 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.922 -26.898 -1.427 27.219 hybrid contribution 0.020 1.143 0.529 1.260 sum -3.903 -25.755 -0.897 26.064 Atomic orbital electron populations 1.21040 0.91751 1.02242 1.02520 1.22718 0.96219 0.94490 0.88211 1.22609 1.01498 0.90678 1.11648 1.19115 0.86781 0.85210 0.76160 1.90720 1.16637 1.88201 1.50673 1.46089 1.13217 1.04939 1.71918 1.21472 0.94490 0.82802 0.96761 0.90506 1.22467 0.99788 0.96608 0.97085 1.22677 0.98946 0.95602 0.99195 1.20049 0.95157 0.93110 0.92951 0.95157 1.21275 0.98258 1.04309 1.30923 0.94314 1.25806 1.00046 0.95622 0.96807 1.70040 1.34777 1.12030 1.42292 0.85951 0.81319 0.76150 0.79899 1.19265 1.22510 1.17217 1.22436 0.98380 0.93334 0.99732 1.19784 0.95259 0.91343 0.97533 1.22014 0.93493 1.02715 1.02291 1.21885 1.02145 0.99977 0.95644 1.21838 1.02117 0.99885 0.95571 0.91500 0.90771 0.91705 0.83133 0.75357 0.91821 0.91437 0.93995 0.92358 0.92642 0.91211 0.91645 0.92031 0.90802 0.92237 0.92065 0.90567 0.92772 0.93023 0.90442 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 7.81 71.24 0.56 -2.01 16 2 C -0.01 -0.28 4.90 -17.61 -0.09 -0.36 16 3 C -0.24 -5.21 8.97 23.43 0.21 -5.00 16 4 C 0.54 15.31 7.60 86.57 0.66 15.96 16 5 O -0.58 -20.16 12.95 -4.06 -0.05 -20.21 16 6 N -0.71 -19.77 4.98 -442.70 -2.21 -21.97 16 7 C 0.15 4.96 3.23 45.71 0.15 5.10 16 8 H 0.08 2.68 7.59 -2.38 -0.02 2.66 16 9 C -0.12 -4.18 6.59 31.32 0.21 -3.97 16 10 C -0.13 -5.19 5.08 31.67 0.16 -5.03 16 11 C 0.01 0.30 2.29 -10.22 -0.02 0.27 16 12 H 0.03 1.40 7.37 -2.39 -0.02 1.39 16 13 C -0.51 -28.46 9.12 25.60 0.23 -28.22 16 14 H 0.04 2.37 8.03 -2.91 -0.02 2.34 16 15 C 0.01 0.81 5.46 84.65 0.46 1.28 16 16 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 17 Si 0.94 44.95 24.46 68.60 1.68 46.63 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 20 H -0.25 -11.11 6.48 99.48 0.64 -10.46 16 21 C -0.10 -3.73 5.95 31.70 0.19 -3.54 16 22 C -0.04 -0.52 0.87 -52.93 -0.05 -0.56 16 23 C -0.15 -1.70 7.14 71.98 0.51 -1.19 16 24 C -0.14 -1.57 8.31 71.98 0.60 -0.97 16 25 C -0.14 -1.60 8.31 71.98 0.60 -1.01 16 26 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 27 H 0.07 1.22 6.65 -2.39 -0.02 1.21 16 28 H 0.06 1.76 6.12 -2.38 -0.01 1.75 16 29 H 0.15 2.49 5.78 -2.91 -0.02 2.47 16 30 H 0.41 9.51 8.33 -92.71 -0.77 8.74 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.19 7.92 -2.39 -0.02 2.18 16 33 H 0.04 1.74 4.91 -2.39 -0.01 1.73 16 34 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.07 2.54 7.63 -2.39 -0.02 2.52 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.06 0.72 7.39 -2.38 -0.02 0.70 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.72 7.61 -2.39 -0.02 0.71 16 41 H 0.06 0.68 6.80 -2.38 -0.02 0.66 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.06 0.70 7.76 -2.38 -0.02 0.68 16 Total: -1.00 -67.34 349.96 4.21 -63.13 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.12 Total: 20.60 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 4.38 Total: -29.24 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.91 Total: -80.91 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.68 Total: 46.63 kcal Total: -67.34 4.21 -63.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326574334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.506 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds