Wall clock time and date at job start Tue Mar 31 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99790 * 2 1 4 4 C 1.53000 * 109.47106 * 125.00069 * 3 2 1 5 5 C 1.52996 * 109.47413 * 184.93842 * 4 3 2 6 6 H 1.08996 * 109.99785 * 306.56244 * 5 4 3 7 7 C 1.54319 * 109.77018 * 67.71518 * 5 4 3 8 8 C 1.55160 * 102.86094 * 141.88506 * 7 5 4 9 9 C 1.54910 * 101.58403 * 324.30572 * 8 7 5 10 10 N 1.47023 * 109.88491 * 185.46461 * 5 4 3 11 11 C 1.34770 * 125.64899 * 61.68090 * 10 5 4 12 12 O 1.21282 * 120.00151 * 354.77526 * 11 10 5 13 13 C 1.50695 * 120.00185 * 174.78057 * 11 10 5 14 14 C 1.53006 * 109.47216 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47077 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46772 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99762 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47154 * 89.99493 * 21 19 17 23 23 H 1.48495 * 109.47141 * 210.00016 * 21 19 17 24 24 H 1.48505 * 109.46926 * 329.99889 * 21 19 17 25 25 H 1.07989 * 120.00161 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99534 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00117 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47095 * 5.00571 * 3 2 1 29 29 H 1.09000 * 109.47483 * 245.00612 * 3 2 1 30 30 H 1.09003 * 109.47038 * 64.94300 * 4 3 2 31 31 H 1.09003 * 109.47640 * 304.94471 * 4 3 2 32 32 H 1.08996 * 110.92524 * 23.47498 * 7 5 4 33 33 H 1.09002 * 110.74381 * 260.21403 * 7 5 4 34 34 H 1.09001 * 111.00612 * 206.22418 * 8 7 5 35 35 H 1.09009 * 111.00402 * 82.37906 * 8 7 5 36 36 H 1.08999 * 110.36282 * 278.17216 * 9 8 7 37 37 H 1.08998 * 110.46205 * 155.89382 * 9 8 7 38 38 H 1.09000 * 109.47442 * 59.99800 * 13 11 10 39 39 H 1.09004 * 109.46908 * 299.99604 * 13 11 10 40 40 H 1.09000 * 109.46813 * 60.00079 * 14 13 11 41 41 H 1.08995 * 109.46799 * 299.99466 * 14 13 11 42 42 H 1.09004 * 109.46818 * 300.00069 * 15 14 13 43 43 H 1.09000 * 109.46795 * 59.99737 * 15 14 13 44 44 H 1.09004 * 109.46990 * 299.99928 * 16 15 14 45 45 H 1.09000 * 109.47142 * 59.99989 * 16 15 14 46 46 H 0.97001 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7103 2.7041 1.2544 6 1 4.1622 2.9485 0.2931 7 6 2.6705 3.7784 1.6368 8 6 3.4717 4.7140 2.5804 9 6 4.3806 3.7028 3.3228 10 7 4.7397 2.6994 2.3041 11 6 5.8334 1.9124 2.3281 12 8 5.9841 1.0575 1.4811 13 6 6.8692 2.0945 3.4074 14 6 7.9988 1.0823 3.2063 15 6 9.0507 1.2676 4.3018 16 6 10.1799 0.2550 4.1010 17 6 11.2157 0.4371 5.1804 18 1 11.0821 1.1991 5.9339 19 6 12.3344 -0.3685 5.2052 20 7 12.4973 -1.2961 4.2873 21 14 13.6180 -0.1433 6.5436 22 1 13.2778 -1.0033 7.7055 23 1 14.9532 -0.5261 6.0184 24 1 13.6433 1.2787 6.9709 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4028 -0.9314 30 1 3.7931 0.5615 1.0471 31 1 2.4882 1.1479 2.1062 32 1 1.8256 3.3330 2.1619 33 1 2.3319 4.3198 0.7534 34 1 2.8087 5.2277 3.2765 35 1 4.0661 5.4281 2.0102 36 1 3.8358 3.2335 4.1419 37 1 5.2754 4.1991 3.6983 38 1 6.4093 1.9360 4.3829 39 1 7.2734 3.1055 3.3562 40 1 8.4588 1.2404 2.2309 41 1 7.5943 0.0715 3.2578 42 1 9.4551 2.2785 4.2499 43 1 8.5909 1.1098 5.2774 44 1 9.7751 -0.7558 4.1531 45 1 10.6398 0.4123 3.1253 46 1 13.2842 -1.8631 4.3050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353906264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:44 Heat of formation + Delta-G solvation = -53.872512 kcal Electronic energy + Delta-G solvation = -21376.943175 eV Core-core repulsion = 18265.510362 eV Total energy + Delta-G solvation = -3111.432813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35140 -37.83764 -35.78224 -34.85121 -32.71411 -32.01474 -31.58219 -29.55069 -27.65719 -25.78484 -24.17136 -22.75483 -22.10486 -20.83953 -20.03523 -19.93852 -18.79958 -17.07024 -16.50184 -16.13109 -15.67048 -15.41465 -14.94838 -14.49436 -14.33064 -14.01451 -13.73523 -13.44814 -13.35244 -12.84901 -12.81802 -12.55466 -12.09611 -11.83616 -11.75522 -11.60269 -11.54861 -11.44505 -11.26261 -11.00077 -10.94446 -10.77647 -10.50311 -10.47780 -10.37187 -9.69563 -9.59049 -9.57892 -9.18523 -8.95503 -8.70499 -8.28472 -5.93221 -3.95646 2.02359 2.75479 2.91448 3.35301 3.41196 3.44455 4.18639 4.24542 4.46934 4.50578 4.64140 4.78742 4.91131 4.94894 5.03595 5.07334 5.16299 5.27964 5.35818 5.36476 5.40867 5.42256 5.45277 5.49313 5.55572 5.63197 5.70424 5.82397 5.87134 5.98352 6.09555 6.17667 6.28464 6.36098 6.42787 6.52016 6.58606 6.87442 7.04992 7.23010 7.49046 7.76519 7.92867 8.08454 8.27749 8.50247 9.12105 9.67794 11.18140 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002649 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.336617 B =10566.002036 C =11376.601303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.091 4.091 4 C -0.128 4.128 5 C 0.138 3.862 6 H 0.074 0.926 7 C -0.128 4.128 8 C -0.134 4.134 9 C 0.099 3.901 10 N -0.624 5.624 11 C 0.528 3.472 12 O -0.532 6.532 13 C -0.134 4.134 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.303 11.914 -5.718 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.165 4.165 3 C -0.129 4.129 4 C -0.166 4.166 5 C 0.034 3.966 6 H 0.092 0.908 7 C -0.166 4.166 8 C -0.172 4.172 9 C -0.025 4.025 10 N -0.360 5.360 11 C 0.318 3.682 12 O -0.407 6.407 13 C -0.174 4.174 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.999 11.256 -6.226 28.114 hybrid contribution 0.698 0.049 0.777 1.046 sum -24.301 11.304 -5.449 27.350 Atomic orbital electron populations 1.23812 0.95902 1.01661 1.02462 1.23006 0.95990 0.98793 0.98703 1.20733 0.97948 0.95288 0.98899 1.21935 0.98636 0.97890 0.98130 1.21552 0.88005 0.95275 0.91742 0.90839 1.22745 0.97515 0.96221 1.00162 1.22787 0.98373 0.97261 0.98821 1.22320 0.99387 0.89358 0.91386 1.48692 1.23203 1.39520 1.24575 1.20794 0.80823 0.79769 0.86775 1.90688 1.76714 1.33029 1.40300 1.21786 0.95712 1.02700 0.97196 1.21459 0.94311 0.97744 1.00590 1.21645 0.96344 1.00593 0.96145 1.19098 0.91898 0.93775 0.96974 1.21287 1.05094 1.17410 1.11993 0.92765 1.25049 0.98225 0.95373 0.95979 1.69977 1.28560 1.20798 1.34154 0.86609 0.81030 0.78355 0.82077 1.20714 1.21264 1.19932 0.88749 0.88656 0.87346 0.91531 0.90884 0.89829 0.91894 0.90402 0.90191 0.89841 0.90513 0.91351 0.90210 0.89363 0.89281 0.91825 0.91827 0.93515 0.93518 0.96598 0.96587 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 14.32 29.01 0.42 -1.12 16 2 C -0.15 -1.28 9.52 -36.03 -0.34 -1.62 16 3 C -0.09 -0.76 5.58 -27.88 -0.16 -0.92 16 4 C -0.13 -1.31 4.67 -26.73 -0.12 -1.44 16 5 C 0.14 1.35 2.93 -66.96 -0.20 1.15 16 6 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.13 -0.83 5.54 -24.90 -0.14 -0.96 16 8 C -0.13 -0.79 7.08 -24.58 -0.17 -0.96 16 9 C 0.10 0.78 6.74 -2.53 -0.02 0.76 16 10 N -0.62 -7.07 3.07 -163.03 -0.50 -7.57 16 11 C 0.53 7.86 7.67 -10.99 -0.08 7.78 16 12 O -0.53 -9.94 14.77 5.56 0.08 -9.85 16 13 C -0.13 -1.89 4.63 -27.88 -0.13 -2.02 16 14 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 17 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.09 0.62 7.84 -52.49 -0.41 0.21 16 26 H 0.10 0.65 8.06 -52.48 -0.42 0.22 16 27 H 0.11 0.99 8.06 -52.48 -0.42 0.56 16 28 H 0.07 0.46 7.00 -51.93 -0.36 0.09 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.14 6.54 -51.93 -0.34 0.80 16 31 H 0.06 0.64 8.01 -51.93 -0.42 0.23 16 32 H 0.08 0.47 7.77 -51.93 -0.40 0.06 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.58 7.47 -51.93 -0.39 0.19 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.10 7.95 -51.93 -0.41 0.69 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -33.59 370.35 -9.49 -43.08 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -8.61 Total: -3.85 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.75 Total: -17.38 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.24 Total: -34.64 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.59 -9.49 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353906264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.797 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds