Wall clock time and date at job start Tue Mar 31 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99790 * 2 1 4 4 C 1.53000 * 109.47106 * 125.00069 * 3 2 1 5 5 C 1.52996 * 109.47413 * 184.93842 * 4 3 2 6 6 H 1.08996 * 109.99785 * 306.56244 * 5 4 3 7 7 C 1.54319 * 109.77018 * 67.71518 * 5 4 3 8 8 C 1.55160 * 102.86094 * 141.88506 * 7 5 4 9 9 C 1.54910 * 101.58403 * 324.30572 * 8 7 5 10 10 N 1.47023 * 109.88491 * 185.46461 * 5 4 3 11 11 C 1.34770 * 125.64899 * 61.68090 * 10 5 4 12 12 O 1.21282 * 120.00151 * 354.77526 * 11 10 5 13 13 C 1.50695 * 120.00185 * 174.78057 * 11 10 5 14 14 C 1.53006 * 109.47216 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47077 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.46884 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46772 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99762 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47154 * 89.99493 * 21 19 17 23 23 H 1.48495 * 109.47141 * 210.00016 * 21 19 17 24 24 H 1.48505 * 109.46926 * 329.99889 * 21 19 17 25 25 H 1.07989 * 120.00161 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.99534 * 179.97438 * 1 2 3 27 27 H 1.08003 * 120.00117 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47095 * 5.00571 * 3 2 1 29 29 H 1.09000 * 109.47483 * 245.00612 * 3 2 1 30 30 H 1.09003 * 109.47038 * 64.94300 * 4 3 2 31 31 H 1.09003 * 109.47640 * 304.94471 * 4 3 2 32 32 H 1.08996 * 110.92524 * 23.47498 * 7 5 4 33 33 H 1.09002 * 110.74381 * 260.21403 * 7 5 4 34 34 H 1.09001 * 111.00612 * 206.22418 * 8 7 5 35 35 H 1.09009 * 111.00402 * 82.37906 * 8 7 5 36 36 H 1.08999 * 110.36282 * 278.17216 * 9 8 7 37 37 H 1.08998 * 110.46205 * 155.89382 * 9 8 7 38 38 H 1.09000 * 109.47442 * 59.99800 * 13 11 10 39 39 H 1.09004 * 109.46908 * 299.99604 * 13 11 10 40 40 H 1.09000 * 109.46813 * 60.00079 * 14 13 11 41 41 H 1.08995 * 109.46799 * 299.99466 * 14 13 11 42 42 H 1.09004 * 109.46818 * 300.00069 * 15 14 13 43 43 H 1.09000 * 109.46795 * 59.99737 * 15 14 13 44 44 H 1.09004 * 109.46990 * 299.99928 * 16 15 14 45 45 H 1.09000 * 109.47142 * 59.99989 * 16 15 14 46 46 H 0.97001 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7103 2.7041 1.2544 6 1 4.1622 2.9485 0.2931 7 6 2.6705 3.7784 1.6368 8 6 3.4717 4.7140 2.5804 9 6 4.3806 3.7028 3.3228 10 7 4.7397 2.6994 2.3041 11 6 5.8334 1.9124 2.3281 12 8 5.9841 1.0575 1.4811 13 6 6.8692 2.0945 3.4074 14 6 7.9988 1.0823 3.2063 15 6 9.0507 1.2676 4.3018 16 6 10.1799 0.2550 4.1010 17 6 11.2157 0.4371 5.1804 18 1 11.0821 1.1991 5.9339 19 6 12.3344 -0.3685 5.2052 20 7 12.4973 -1.2961 4.2873 21 14 13.6180 -0.1433 6.5436 22 1 13.2778 -1.0033 7.7055 23 1 14.9532 -0.5261 6.0184 24 1 13.6433 1.2787 6.9709 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0897 29 1 2.6212 1.4028 -0.9314 30 1 3.7931 0.5615 1.0471 31 1 2.4882 1.1479 2.1062 32 1 1.8256 3.3330 2.1619 33 1 2.3319 4.3198 0.7534 34 1 2.8087 5.2277 3.2765 35 1 4.0661 5.4281 2.0102 36 1 3.8358 3.2335 4.1419 37 1 5.2754 4.1991 3.6983 38 1 6.4093 1.9360 4.3829 39 1 7.2734 3.1055 3.3562 40 1 8.4588 1.2404 2.2309 41 1 7.5943 0.0715 3.2578 42 1 9.4551 2.2785 4.2499 43 1 8.5909 1.1098 5.2774 44 1 9.7751 -0.7558 4.1531 45 1 10.6398 0.4123 3.1253 46 1 13.2842 -1.8631 4.3050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353906264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:43 Heat of formation + Delta-G solvation = -72.476686 kcal Electronic energy + Delta-G solvation = -21377.749913 eV Core-core repulsion = 18265.510362 eV Total energy + Delta-G solvation = -3112.239551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29306 -38.83093 -36.62870 -36.47595 -34.63489 -33.03677 -32.27465 -31.23648 -28.36493 -27.49476 -25.22831 -24.04754 -23.06235 -21.95802 -21.45197 -20.70237 -19.74915 -18.44262 -18.00582 -17.36532 -16.79019 -16.50546 -16.21659 -15.89939 -15.38781 -15.15824 -14.61909 -14.40329 -14.15613 -14.09548 -13.88965 -13.71492 -13.43699 -13.39107 -13.24129 -12.82462 -12.54700 -12.36172 -12.26122 -12.19000 -12.16149 -12.00271 -11.90517 -11.55020 -11.51765 -11.40016 -11.35068 -11.13625 -10.67913 -10.55888 -10.26542 -9.61643 -8.19282 -6.31709 1.37410 1.39815 1.42465 1.53542 1.63079 2.01212 2.41562 3.13284 3.47141 3.68082 3.81385 3.88971 4.01533 4.05700 4.11323 4.20264 4.25501 4.37174 4.46996 4.50136 4.57296 4.64371 4.69200 4.78272 4.79109 4.83630 4.86406 4.98640 5.01128 5.03823 5.13880 5.16241 5.19530 5.26996 5.31204 5.34913 5.39556 5.53329 5.55401 5.75073 5.76272 5.86690 5.87067 6.24296 6.52781 6.86619 7.18904 7.37890 8.93124 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002649 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.336617 B =10566.002036 C =11376.601303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.172 4.172 3 C -0.083 4.083 4 C -0.120 4.120 5 C 0.129 3.871 6 H 0.058 0.942 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.087 3.913 10 N -0.620 5.620 11 C 0.521 3.479 12 O -0.585 6.585 13 C -0.122 4.122 14 C -0.094 4.094 15 C -0.094 4.094 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.258 1.258 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.061 0.939 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.085 14.839 -3.803 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.191 4.191 3 C -0.120 4.120 4 C -0.159 4.159 5 C 0.026 3.974 6 H 0.077 0.923 7 C -0.157 4.157 8 C -0.163 4.163 9 C -0.035 4.035 10 N -0.354 5.354 11 C 0.311 3.689 12 O -0.466 6.466 13 C -0.162 4.162 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.182 1.182 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.128 0.872 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.828 14.232 -4.289 30.671 hybrid contribution 1.189 -0.898 0.133 1.496 sum -25.639 13.333 -4.156 29.196 Atomic orbital electron populations 1.24013 0.95341 1.02844 1.00073 1.23007 0.96663 0.98458 1.00929 1.20669 0.97774 0.96025 0.97562 1.21821 0.97897 0.97079 0.99070 1.21748 0.88522 0.96173 0.90959 0.92337 1.22741 0.96580 0.95099 1.01261 1.22804 0.98148 0.96552 0.98833 1.22682 1.00627 0.89110 0.91055 1.48743 1.22139 1.38899 1.25579 1.20893 0.81905 0.79740 0.86339 1.90674 1.78095 1.35487 1.42298 1.21642 0.94112 1.02279 0.98158 1.21240 0.95205 0.98224 0.98584 1.21437 0.94902 0.99230 0.97584 1.19057 0.93687 0.93952 0.95156 1.21748 1.05768 1.17797 1.12587 0.91499 1.26124 1.00920 0.94813 0.98678 1.70138 1.29516 1.21866 1.36400 0.85358 0.77448 0.79152 0.78537 1.19665 1.20926 1.18237 0.87014 0.87972 0.88890 0.89068 0.91699 0.94127 0.91769 0.89308 0.88401 0.87199 0.90366 0.90122 0.89116 0.86888 0.86706 0.93963 0.94037 0.92027 0.92063 0.99793 0.99758 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 14.32 67.78 0.97 -1.57 16 2 C -0.17 -3.01 9.52 25.65 0.24 -2.77 16 3 C -0.08 -1.36 5.58 29.85 0.17 -1.20 16 4 C -0.12 -2.54 4.67 30.59 0.14 -2.40 16 5 C 0.13 2.44 2.93 45.34 0.13 2.57 16 6 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 7 C -0.12 -1.15 5.54 31.78 0.18 -0.98 16 8 C -0.13 -0.99 7.08 31.99 0.23 -0.76 16 9 C 0.09 1.10 6.74 86.86 0.59 1.69 16 10 N -0.62 -13.48 3.07 -788.09 -2.42 -15.89 16 11 C 0.52 15.74 7.67 87.66 0.67 16.41 16 12 O -0.59 -23.42 14.77 -3.04 -0.04 -23.46 16 13 C -0.12 -3.34 4.63 29.85 0.14 -3.20 16 14 C -0.09 -3.60 4.50 30.60 0.14 -3.46 16 15 C -0.09 -3.97 5.15 30.59 0.16 -3.81 16 16 C 0.02 1.05 4.97 29.85 0.15 1.19 16 17 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 19 C -0.01 -0.50 5.46 84.66 0.46 -0.03 16 20 N -0.94 -59.93 13.29 21.45 0.28 -59.64 16 21 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 H 0.11 1.14 7.84 -2.92 -0.02 1.11 16 26 H 0.10 1.24 8.06 -2.91 -0.02 1.21 16 27 H 0.09 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.09 1.04 7.00 -2.39 -0.02 1.02 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.21 6.54 -2.39 -0.02 1.20 16 31 H 0.06 1.30 8.01 -2.39 -0.02 1.28 16 32 H 0.09 0.72 7.77 -2.39 -0.02 0.70 16 33 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.11 0.37 8.14 -2.39 -0.02 0.36 16 35 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.98 7.47 -2.39 -0.02 0.96 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.11 2.56 7.95 -2.38 -0.02 2.54 16 40 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 41 H 0.04 1.73 8.10 -2.39 -0.02 1.72 16 42 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 43 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 44 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.28 370.35 5.34 -71.94 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 0.90 Total: 9.69 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.59 Total: -29.93 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -2.13 Total: -75.53 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.28 5.34 -71.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353906264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.539 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds