Wall clock time and date at job start Tue Mar 31 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00041 * 2 1 4 4 C 1.53003 * 109.47093 * 125.00111 * 3 2 1 5 5 C 1.52996 * 109.47074 * 185.01540 * 4 3 2 6 6 H 1.09001 * 109.87834 * 55.54612 * 5 4 3 7 7 C 1.54327 * 109.88501 * 294.52836 * 5 4 3 8 8 C 1.55161 * 102.94475 * 218.23722 * 7 5 4 9 9 C 1.54917 * 101.58002 * 35.49805 * 8 7 5 10 10 N 1.47294 * 110.00703 * 176.60502 * 5 4 3 11 11 C 1.34778 * 125.79077 * 298.43275 * 10 5 4 12 12 O 1.21284 * 119.99996 * 4.95429 * 11 10 5 13 13 C 1.50700 * 120.00075 * 184.95098 * 11 10 5 14 14 C 1.53003 * 109.46828 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46380 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46648 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47096 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99578 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00141 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99584 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47037 * 89.99801 * 21 19 17 23 23 H 1.48503 * 109.46787 * 209.99465 * 21 19 17 24 24 H 1.48492 * 109.47293 * 329.99513 * 21 19 17 25 25 H 1.07995 * 120.00017 * 359.97438 * 1 2 3 26 26 H 1.08009 * 119.99815 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99999 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47421 * 4.99991 * 3 2 1 29 29 H 1.09000 * 109.47564 * 244.99674 * 3 2 1 30 30 H 1.08995 * 109.47249 * 65.01227 * 4 3 2 31 31 H 1.09000 * 109.47182 * 305.01184 * 4 3 2 32 32 H 1.08992 * 110.71999 * 99.87056 * 7 5 4 33 33 H 1.09001 * 110.71776 * 336.59606 * 7 5 4 34 34 H 1.08995 * 111.00346 * 277.42904 * 8 7 5 35 35 H 1.08994 * 111.03402 * 153.58557 * 8 7 5 36 36 H 1.09003 * 110.36315 * 81.82845 * 9 8 7 37 37 H 1.08996 * 110.36421 * 204.04357 * 9 8 7 38 38 H 1.09000 * 109.46961 * 300.00045 * 13 11 10 39 39 H 1.08996 * 109.46775 * 60.00011 * 13 11 10 40 40 H 1.08997 * 109.46759 * 299.99536 * 14 13 11 41 41 H 1.08996 * 109.47579 * 60.00324 * 14 13 11 42 42 H 1.08991 * 109.47264 * 299.99906 * 15 14 13 43 43 H 1.08996 * 109.46997 * 59.99971 * 15 14 13 44 44 H 1.09002 * 109.47300 * 300.00521 * 16 15 14 45 45 H 1.09001 * 109.46829 * 60.00073 * 16 15 14 46 46 H 0.96996 * 119.99258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7089 2.7046 1.2555 6 1 2.9519 3.4869 1.3114 7 6 4.5964 2.9211 0.0117 8 6 5.8314 3.6610 0.5904 9 6 5.9706 2.9929 1.9811 10 7 4.5861 2.7722 2.4367 11 6 4.1911 2.6524 3.7198 12 8 3.0368 2.3826 3.9762 13 6 5.1837 2.8536 4.8357 14 6 4.4830 2.6618 6.1822 15 6 5.4910 2.8655 7.3152 16 6 4.7902 2.6744 8.6618 17 6 5.7828 2.8756 9.7777 18 1 6.8106 3.1162 9.5493 19 6 5.3788 2.7525 11.0902 20 7 4.1271 2.4600 11.3683 21 14 6.6091 3.0027 12.4734 22 1 6.6222 4.4333 12.8715 23 1 6.2202 2.1682 13.6386 24 1 7.9627 2.6054 12.0098 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.7937 0.5622 1.0465 31 1 2.4883 1.1466 2.1060 32 1 4.0848 3.5416 -0.7239 33 1 4.8887 1.9658 -0.4245 34 1 5.6367 4.7290 0.6878 35 1 6.7165 3.4813 -0.0198 36 1 6.4975 2.0426 1.8943 37 1 6.4954 3.6554 2.6693 38 1 5.9906 2.1271 4.7396 39 1 5.5940 3.8618 4.7795 40 1 3.6760 3.3881 6.2785 41 1 4.0730 1.6534 6.2382 42 1 6.2978 2.1391 7.2187 43 1 5.9014 3.8737 7.2594 44 1 3.9835 3.4011 8.7580 45 1 4.3795 1.6662 8.7177 46 1 3.8429 2.3738 12.2916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353906265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:48 Heat of formation + Delta-G solvation = -53.839966 kcal Electronic energy + Delta-G solvation = -21386.648652 eV Core-core repulsion = 18275.217250 eV Total energy + Delta-G solvation = -3111.431402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.32403 -37.82937 -35.76277 -34.84648 -32.71171 -32.02260 -31.55316 -29.54974 -27.62202 -25.78438 -24.18845 -22.76114 -22.09019 -20.79076 -20.07177 -19.92837 -18.77682 -17.02676 -16.49005 -16.12592 -15.65343 -15.51943 -14.83326 -14.43556 -14.39578 -14.00562 -13.83447 -13.69345 -13.04956 -12.85560 -12.57077 -12.45161 -12.22462 -11.98102 -11.76487 -11.62822 -11.49760 -11.44427 -11.28643 -11.01881 -10.95054 -10.68130 -10.50355 -10.47342 -10.36909 -9.73067 -9.57973 -9.51743 -9.18102 -8.95236 -8.70500 -8.28254 -5.93047 -3.95468 2.06736 2.76237 2.91375 3.35417 3.41309 3.44601 4.19637 4.24573 4.46344 4.50767 4.64980 4.81247 4.89106 4.96018 5.01746 5.13602 5.18503 5.27631 5.36299 5.36903 5.40032 5.42019 5.43102 5.49479 5.54695 5.63649 5.72085 5.84100 5.87445 6.00249 6.09763 6.17960 6.29500 6.37588 6.43319 6.55723 6.58919 6.87752 7.05344 7.23259 7.49812 7.76764 7.93153 8.08737 8.28505 8.50480 9.12311 9.67997 11.18353 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002736 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.654348 B =10232.387507 C =11243.628946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.089 4.089 4 C -0.127 4.127 5 C 0.137 3.863 6 H 0.073 0.927 7 C -0.128 4.128 8 C -0.134 4.134 9 C 0.098 3.902 10 N -0.625 5.625 11 C 0.528 3.472 12 O -0.531 6.531 13 C -0.134 4.134 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -0.111 -28.378 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.170 4.170 3 C -0.127 4.127 4 C -0.166 4.166 5 C 0.034 3.966 6 H 0.091 0.909 7 C -0.166 4.166 8 C -0.172 4.172 9 C -0.025 4.025 10 N -0.360 5.360 11 C 0.318 3.682 12 O -0.407 6.407 13 C -0.174 4.174 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.629 -0.294 -27.974 27.983 hybrid contribution 0.677 0.074 0.812 1.060 sum 1.306 -0.219 -27.162 27.194 Atomic orbital electron populations 1.23852 0.96007 1.01819 1.01529 1.22928 0.96059 0.98477 0.99560 1.20713 0.98090 0.95551 0.98351 1.21926 0.98551 0.96366 0.99736 1.21611 0.92651 0.97679 0.84634 0.90915 1.22744 0.96074 1.01263 0.96548 1.22783 0.98637 1.00206 0.95604 1.22314 0.83876 1.00357 0.95924 1.48756 1.08689 1.73362 1.05243 1.20800 0.89661 0.75729 0.81990 1.90695 1.19998 1.47057 1.82920 1.21783 0.98072 1.03475 0.94033 1.21461 0.98739 1.02682 0.91241 1.21644 0.97297 0.99918 0.95862 1.19097 0.95679 0.97191 0.89761 1.21287 0.95925 1.47439 0.91147 0.92770 1.25046 0.95174 0.95461 0.98927 1.69980 1.15665 1.48914 1.18928 0.86609 0.81566 0.78030 0.81872 1.20715 1.21261 1.19932 0.88615 0.88606 0.87546 0.91489 0.91092 0.91885 0.89861 0.90151 0.90385 0.90530 0.89831 0.91366 0.90238 0.89368 0.89287 0.91821 0.91826 0.93512 0.93523 0.96602 0.96590 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.69 14.32 29.02 0.42 -1.28 16 2 C -0.15 -1.35 9.52 -36.03 -0.34 -1.69 16 3 C -0.09 -0.74 5.41 -27.88 -0.15 -0.90 16 4 C -0.13 -1.31 4.66 -26.73 -0.12 -1.44 16 5 C 0.14 1.35 2.95 -66.80 -0.20 1.15 16 6 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.13 -0.81 5.61 -24.89 -0.14 -0.95 16 8 C -0.13 -0.78 7.09 -24.58 -0.17 -0.96 16 9 C 0.10 0.77 6.73 -2.53 -0.02 0.76 16 10 N -0.62 -7.11 3.08 -162.81 -0.50 -7.61 16 11 C 0.53 7.92 7.68 -10.98 -0.08 7.84 16 12 O -0.53 -10.04 14.82 5.55 0.08 -9.96 16 13 C -0.13 -1.90 4.63 -27.88 -0.13 -2.03 16 14 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 15 C -0.11 -2.31 5.15 -26.72 -0.14 -2.45 16 16 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.84 13.29 55.43 0.74 -27.11 16 21 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 26 H 0.10 0.73 8.06 -52.48 -0.42 0.31 16 27 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 28 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 29 H 0.07 0.47 7.58 -51.93 -0.39 0.08 16 30 H 0.06 0.62 8.06 -51.93 -0.42 0.21 16 31 H 0.08 1.16 6.62 -51.93 -0.34 0.82 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 7.79 -51.93 -0.40 0.04 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.57 7.47 -51.93 -0.39 0.19 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 1.11 7.95 -51.93 -0.41 0.70 16 40 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 41 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -33.82 370.73 -9.50 -43.33 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.63 Total: -3.78 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.75 Total: -17.55 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.24 Total: -34.71 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.82 -9.50 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353906265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.515 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds