Wall clock time and date at job start Tue Mar 31 2020 01:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00041 * 2 1 4 4 C 1.53003 * 109.47093 * 125.00111 * 3 2 1 5 5 C 1.52996 * 109.47074 * 185.01540 * 4 3 2 6 6 H 1.09001 * 109.87834 * 55.54612 * 5 4 3 7 7 C 1.54327 * 109.88501 * 294.52836 * 5 4 3 8 8 C 1.55161 * 102.94475 * 218.23722 * 7 5 4 9 9 C 1.54917 * 101.58002 * 35.49805 * 8 7 5 10 10 N 1.47294 * 110.00703 * 176.60502 * 5 4 3 11 11 C 1.34778 * 125.79077 * 298.43275 * 10 5 4 12 12 O 1.21284 * 119.99996 * 4.95429 * 11 10 5 13 13 C 1.50700 * 120.00075 * 184.95098 * 11 10 5 14 14 C 1.53003 * 109.46828 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46380 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46648 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47096 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99578 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00141 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99584 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47037 * 89.99801 * 21 19 17 23 23 H 1.48503 * 109.46787 * 209.99465 * 21 19 17 24 24 H 1.48492 * 109.47293 * 329.99513 * 21 19 17 25 25 H 1.07995 * 120.00017 * 359.97438 * 1 2 3 26 26 H 1.08009 * 119.99815 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99999 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47421 * 4.99991 * 3 2 1 29 29 H 1.09000 * 109.47564 * 244.99674 * 3 2 1 30 30 H 1.08995 * 109.47249 * 65.01227 * 4 3 2 31 31 H 1.09000 * 109.47182 * 305.01184 * 4 3 2 32 32 H 1.08992 * 110.71999 * 99.87056 * 7 5 4 33 33 H 1.09001 * 110.71776 * 336.59606 * 7 5 4 34 34 H 1.08995 * 111.00346 * 277.42904 * 8 7 5 35 35 H 1.08994 * 111.03402 * 153.58557 * 8 7 5 36 36 H 1.09003 * 110.36315 * 81.82845 * 9 8 7 37 37 H 1.08996 * 110.36421 * 204.04357 * 9 8 7 38 38 H 1.09000 * 109.46961 * 300.00045 * 13 11 10 39 39 H 1.08996 * 109.46775 * 60.00011 * 13 11 10 40 40 H 1.08997 * 109.46759 * 299.99536 * 14 13 11 41 41 H 1.08996 * 109.47579 * 60.00324 * 14 13 11 42 42 H 1.08991 * 109.47264 * 299.99906 * 15 14 13 43 43 H 1.08996 * 109.46997 * 59.99971 * 15 14 13 44 44 H 1.09002 * 109.47300 * 300.00521 * 16 15 14 45 45 H 1.09001 * 109.46829 * 60.00073 * 16 15 14 46 46 H 0.96996 * 119.99258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7089 2.7046 1.2555 6 1 2.9519 3.4869 1.3114 7 6 4.5964 2.9211 0.0117 8 6 5.8314 3.6610 0.5904 9 6 5.9706 2.9929 1.9811 10 7 4.5861 2.7722 2.4367 11 6 4.1911 2.6524 3.7198 12 8 3.0368 2.3826 3.9762 13 6 5.1837 2.8536 4.8357 14 6 4.4830 2.6618 6.1822 15 6 5.4910 2.8655 7.3152 16 6 4.7902 2.6744 8.6618 17 6 5.7828 2.8756 9.7777 18 1 6.8106 3.1162 9.5493 19 6 5.3788 2.7525 11.0902 20 7 4.1271 2.4600 11.3683 21 14 6.6091 3.0027 12.4734 22 1 6.6222 4.4333 12.8715 23 1 6.2202 2.1682 13.6386 24 1 7.9627 2.6054 12.0098 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 3.7937 0.5622 1.0465 31 1 2.4883 1.1466 2.1060 32 1 4.0848 3.5416 -0.7239 33 1 4.8887 1.9658 -0.4245 34 1 5.6367 4.7290 0.6878 35 1 6.7165 3.4813 -0.0198 36 1 6.4975 2.0426 1.8943 37 1 6.4954 3.6554 2.6693 38 1 5.9906 2.1271 4.7396 39 1 5.5940 3.8618 4.7795 40 1 3.6760 3.3881 6.2785 41 1 4.0730 1.6534 6.2382 42 1 6.2978 2.1391 7.2187 43 1 5.9014 3.8737 7.2594 44 1 3.9835 3.4011 8.7580 45 1 4.3795 1.6662 8.7177 46 1 3.8429 2.3738 12.2916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353906265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:47 Heat of formation + Delta-G solvation = -72.669528 kcal Electronic energy + Delta-G solvation = -21387.465163 eV Core-core repulsion = 18275.217250 eV Total energy + Delta-G solvation = -3112.247913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26944 -38.82387 -36.62787 -36.47356 -34.63445 -33.05355 -32.25341 -31.24012 -28.34833 -27.48974 -25.24755 -24.05680 -23.06763 -21.93180 -21.41635 -20.77108 -19.73151 -18.44020 -17.97244 -17.35220 -16.75680 -16.49439 -16.35350 -15.86878 -15.33025 -15.10302 -14.66847 -14.57069 -14.33127 -13.98575 -13.81147 -13.55649 -13.45430 -13.26628 -13.02097 -12.95134 -12.81040 -12.37230 -12.25158 -12.18781 -12.16518 -12.00264 -11.94180 -11.55931 -11.42179 -11.39929 -11.34897 -11.14015 -10.71148 -10.55806 -10.24104 -9.62118 -8.19251 -6.31703 1.36660 1.39876 1.42512 1.53610 1.63332 2.00897 2.41645 3.13388 3.48464 3.68491 3.77710 3.90424 4.01536 4.08082 4.11247 4.15215 4.30481 4.36867 4.45645 4.52148 4.57047 4.64432 4.68388 4.75923 4.78318 4.83632 4.86331 4.97044 5.00295 5.06627 5.14479 5.16662 5.20553 5.26962 5.31462 5.34967 5.39961 5.53012 5.55399 5.73215 5.76317 5.86448 5.86795 6.24362 6.53270 6.86667 7.19201 7.37970 8.93211 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.002736 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.654348 B =10232.387507 C =11243.628946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.083 4.083 4 C -0.120 4.120 5 C 0.129 3.871 6 H 0.056 0.944 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.087 3.913 10 N -0.621 5.621 11 C 0.521 3.479 12 O -0.586 6.586 13 C -0.122 4.122 14 C -0.095 4.095 15 C -0.094 4.094 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.258 1.258 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.061 0.939 44 H -0.016 1.016 45 H -0.016 1.016 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.533 0.571 -30.287 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.181 4.181 3 C -0.120 4.120 4 C -0.159 4.159 5 C 0.026 3.974 6 H 0.074 0.926 7 C -0.156 4.156 8 C -0.163 4.163 9 C -0.035 4.035 10 N -0.354 5.354 11 C 0.311 3.689 12 O -0.466 6.466 13 C -0.162 4.162 14 C -0.133 4.133 15 C -0.131 4.131 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.182 1.182 25 H 0.114 0.886 26 H 0.122 0.878 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.002 0.998 45 H 0.002 0.998 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.805 0.402 -29.941 30.185 hybrid contribution -0.352 -0.156 1.376 1.428 sum 3.454 0.246 -28.566 28.775 Atomic orbital electron populations 1.24009 0.96228 1.02337 1.01451 1.23107 0.96328 0.99031 0.99650 1.20682 0.97732 0.95115 0.98516 1.21810 0.98621 0.96969 0.98457 1.21803 0.93106 0.96683 0.85800 0.92589 1.22745 0.95602 1.02462 0.94837 1.22801 0.99291 0.99880 0.94375 1.22678 0.81726 1.01656 0.97430 1.48806 1.10810 1.71310 1.04481 1.20900 0.88943 0.75565 0.83475 1.90679 1.22094 1.49839 1.83982 1.21639 0.97824 1.05730 0.90965 1.21242 0.97893 1.00711 0.93433 1.21436 0.97423 1.01133 0.93152 1.19054 0.95127 0.94288 0.93347 1.21750 0.96727 1.47420 0.92040 0.91501 1.26118 0.97324 0.94837 1.02209 1.70141 1.18119 1.49890 1.19776 0.85360 0.79095 0.78302 0.77757 1.19653 1.20924 1.18239 0.88564 0.87789 0.86966 0.92030 0.88498 0.91385 0.94325 0.88454 0.89072 0.90477 0.87153 0.90022 0.89194 0.86846 0.86728 0.93997 0.94036 0.92051 0.92027 0.99787 0.99791 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.54 14.32 67.79 0.97 -2.57 16 2 C -0.16 -2.85 9.52 25.65 0.24 -2.60 16 3 C -0.08 -1.32 5.41 29.85 0.16 -1.16 16 4 C -0.12 -2.49 4.66 30.59 0.14 -2.34 16 5 C 0.13 2.42 2.95 45.29 0.13 2.55 16 6 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 7 C -0.12 -1.11 5.61 31.79 0.18 -0.93 16 8 C -0.13 -0.97 7.09 31.99 0.23 -0.74 16 9 C 0.09 1.08 6.73 86.86 0.58 1.67 16 10 N -0.62 -13.43 3.08 -787.41 -2.42 -15.85 16 11 C 0.52 15.75 7.68 87.66 0.67 16.43 16 12 O -0.59 -23.56 14.82 -3.04 -0.05 -23.60 16 13 C -0.12 -3.33 4.63 29.85 0.14 -3.19 16 14 C -0.09 -3.62 4.50 30.60 0.14 -3.48 16 15 C -0.09 -3.96 5.15 30.60 0.16 -3.81 16 16 C 0.02 1.07 4.97 29.85 0.15 1.22 16 17 C -0.54 -31.88 9.11 25.60 0.23 -31.64 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 19 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 20 N -0.94 -59.93 13.29 21.45 0.28 -59.65 16 21 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 25 H 0.10 1.62 7.84 -2.91 -0.02 1.60 16 26 H 0.10 1.58 8.06 -2.91 -0.02 1.56 16 27 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.06 1.05 7.79 -2.39 -0.02 1.03 16 29 H 0.10 1.05 7.58 -2.39 -0.02 1.03 16 30 H 0.07 1.30 8.06 -2.39 -0.02 1.28 16 31 H 0.04 1.15 6.62 -2.39 -0.02 1.14 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.67 7.79 -2.39 -0.02 0.65 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.97 7.47 -2.39 -0.02 0.95 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.11 2.55 7.95 -2.39 -0.02 2.53 16 40 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 45 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.66 370.73 5.33 -72.32 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.90 Total: 10.11 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.59 Total: -30.62 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -2.14 Total: -75.50 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.66 5.33 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353906265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.345 kcal (2) G-P(sol) polarization free energy of solvation -77.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds