Wall clock time and date at job start Tue Mar 31 2020 01:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.52997 * 109.46940 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47137 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.46750 * 174.79136 * 6 5 4 8 8 C 1.46896 * 111.00074 * 71.94143 * 7 6 5 9 9 C 1.53001 * 109.46916 * 189.99830 * 8 7 6 10 10 C 1.50703 * 109.46801 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00324 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99763 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00328 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00025 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47027 * 90.00189 * 14 12 10 16 16 H 1.48503 * 109.46810 * 210.00038 * 14 12 10 17 17 H 1.48495 * 109.46790 * 329.99918 * 14 12 10 18 18 C 1.46897 * 110.99631 * 195.89440 * 7 6 5 19 19 C 1.50700 * 109.47486 * 75.35014 * 18 7 6 20 20 C 1.34520 * 125.78930 * 84.87365 * 19 18 7 21 21 C 1.41379 * 106.84383 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.83792 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.79239 * 264.56786 * 19 18 7 24 24 H 1.09003 * 109.47177 * 299.99706 * 1 2 3 25 25 H 1.09001 * 109.47403 * 60.00037 * 1 2 3 26 26 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46977 * 240.00162 * 2 1 3 28 28 H 1.09003 * 109.46684 * 120.00139 * 2 1 3 29 29 H 1.09003 * 109.46974 * 60.00169 * 3 2 1 30 30 H 1.08991 * 109.46990 * 299.99997 * 3 2 1 31 31 H 1.09003 * 109.46909 * 60.00423 * 4 3 2 32 32 H 1.09000 * 109.47319 * 300.00583 * 4 3 2 33 33 H 1.09003 * 109.47032 * 60.00271 * 5 4 3 34 34 H 1.09001 * 109.46759 * 300.00424 * 5 4 3 35 35 H 1.09000 * 109.46751 * 54.79165 * 6 5 4 36 36 H 1.08995 * 109.47035 * 294.79358 * 6 5 4 37 37 H 1.09001 * 109.46820 * 309.99559 * 8 7 6 38 38 H 1.09000 * 109.47159 * 69.99778 * 8 7 6 39 39 H 1.09001 * 109.47155 * 299.99524 * 9 8 7 40 40 H 1.09000 * 109.47249 * 60.00003 * 9 8 7 41 41 H 0.96995 * 120.00244 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.47548 * 315.35185 * 18 7 6 43 43 H 1.09005 * 109.47141 * 195.35304 * 18 7 6 44 44 H 1.08006 * 126.57288 * 0.04147 * 20 19 18 45 45 H 1.07990 * 126.58212 * 179.97438 * 21 20 19 46 46 H 1.08002 * 125.79081 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 7 6.0996 4.2644 -0.1238 8 6 5.8742 5.0176 1.1170 9 6 6.1623 6.5003 0.8730 10 6 5.9305 7.2731 2.1459 11 1 5.6102 6.7582 3.0396 12 6 6.1283 8.6374 2.1698 13 7 6.5188 9.2645 1.0817 14 14 5.8417 9.5953 3.7478 15 1 7.1026 9.6489 4.5302 16 1 5.4056 10.9757 3.4165 17 1 4.7889 8.9228 4.5507 18 6 7.5186 4.2869 -0.5030 19 6 7.6539 3.9409 -1.9635 20 6 7.5423 4.8032 -2.9899 21 6 7.7385 4.0573 -4.1748 22 6 7.9577 2.7836 -3.8016 23 8 7.9121 2.7203 -2.4608 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9287 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 3.7163 3.3986 0.8913 34 1 3.7169 3.3991 -0.8887 35 1 5.9732 2.2929 -0.8387 36 1 5.9733 2.4537 0.9340 37 1 4.8380 4.8960 1.4328 38 1 6.5379 4.6419 1.8958 39 1 7.1984 6.6220 0.5573 40 1 5.4986 6.8761 0.0943 41 1 6.6577 10.2243 1.0984 42 1 8.0662 3.5586 0.0951 43 1 7.9262 5.2823 -0.3262 44 1 7.3416 5.8622 -2.9218 45 1 7.7158 4.4369 -5.1855 46 1 8.1448 1.9538 -4.4670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001620651173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:50 Heat of formation + Delta-G solvation = -16.753672 kcal Electronic energy + Delta-G solvation = -21686.754616 eV Core-core repulsion = 18576.931397 eV Total energy + Delta-G solvation = -3109.823219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.25046 -37.81529 -36.04556 -33.26718 -32.82496 -32.40429 -30.61453 -29.41411 -27.49720 -25.33092 -24.44177 -22.44560 -21.46049 -20.99864 -20.96725 -20.31318 -19.55263 -17.12984 -16.42237 -15.98742 -15.80404 -14.92964 -14.77816 -14.56020 -14.33159 -14.05757 -13.79854 -13.22616 -13.09507 -12.71662 -12.56086 -12.41072 -12.21792 -12.07984 -11.81244 -11.66496 -11.45138 -11.27658 -11.14992 -10.96298 -10.81137 -10.67917 -10.55486 -10.38557 -10.35734 -9.80366 -9.60613 -9.38405 -9.14138 -8.34412 -8.17921 -7.78184 -6.00305 -4.02769 1.99808 2.93058 3.26181 3.31851 3.38395 3.41464 4.36673 4.50472 4.81436 4.84667 4.99420 5.00457 5.17363 5.27225 5.32912 5.35884 5.37015 5.43695 5.50703 5.64378 5.67970 5.76301 5.83012 5.84259 5.91463 6.00295 6.02214 6.07883 6.10078 6.14396 6.25439 6.27528 6.31895 6.39869 6.44674 6.50516 6.59002 6.82014 6.95372 7.40895 7.45166 7.54026 7.77917 7.86760 8.06753 8.41852 9.04184 9.61080 11.10912 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.004771 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.710564 B = 5867.614106 C = 8538.214292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.114 4.114 6 C 0.055 3.945 7 N -0.534 5.534 8 C 0.062 3.938 9 C 0.027 3.973 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.129 3.871 19 C 0.007 3.993 20 C -0.194 4.194 21 C -0.212 4.212 22 C -0.058 4.058 23 O -0.183 6.183 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.026 0.974 41 H 0.260 0.740 42 H 0.043 0.957 43 H 0.117 0.883 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -16.835 -6.802 18.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.073 4.073 7 N -0.258 5.258 8 C -0.064 4.064 9 C -0.010 4.010 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.002 3.998 19 C -0.043 4.043 20 C -0.214 4.214 21 C -0.231 4.231 22 C -0.126 4.126 23 O -0.080 6.080 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.135 0.865 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.381 -16.682 -7.044 18.421 hybrid contribution 0.308 0.383 1.150 1.251 sum -3.074 -16.299 -5.894 17.602 Atomic orbital electron populations 1.21785 0.96124 1.01273 1.01868 1.21543 0.95650 0.97306 1.01744 1.21615 0.95597 0.96289 1.02247 1.21555 0.95160 0.97191 1.01557 1.21565 0.94752 0.95850 1.02997 1.22131 0.95647 0.89950 0.99611 1.62032 1.15283 1.12665 1.35832 1.22408 1.00140 0.96876 0.87007 1.19132 0.97075 0.87610 0.97201 1.21176 1.45887 0.92516 0.96551 0.92778 1.24981 0.95252 0.97818 0.96163 1.69965 1.46724 1.09127 1.27307 0.86612 0.78455 0.79347 0.83688 1.20724 1.21209 1.19889 1.20618 0.90612 1.02840 0.85749 1.22528 1.03482 0.81669 0.96671 1.21638 1.07144 1.01406 0.91177 1.21821 1.07739 0.93775 0.99752 1.23850 1.08038 0.99275 0.81439 1.83990 1.69900 1.32813 1.21261 0.92748 0.92784 0.93069 0.92256 0.92236 0.91954 0.91975 0.92341 0.92404 0.91720 0.91190 0.91614 0.95356 0.91370 0.96036 0.96553 0.95546 0.92987 0.93849 0.86480 0.83226 0.83917 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.13 5.93 -26.73 -0.16 -1.29 16 3 C -0.12 -1.26 5.21 -26.73 -0.14 -1.40 16 4 C -0.12 -1.34 5.21 -26.73 -0.14 -1.48 16 5 C -0.11 -1.61 5.17 -26.73 -0.14 -1.75 16 6 C 0.05 0.85 4.79 -3.82 -0.02 0.83 16 7 N -0.53 -9.71 4.38 -236.07 -1.03 -10.74 16 8 C 0.06 1.28 4.75 -3.83 -0.02 1.26 16 9 C 0.03 0.69 4.94 -27.88 -0.14 0.55 16 10 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 14 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.13 2.24 5.38 -4.98 -0.03 2.22 16 19 C 0.01 0.11 6.14 -35.62 -0.22 -0.11 16 20 C -0.19 -3.17 10.81 -39.70 -0.43 -3.60 16 21 C -0.21 -2.90 10.91 -39.70 -0.43 -3.33 16 22 C -0.06 -0.74 12.09 29.42 0.36 -0.39 16 23 O -0.18 -2.82 10.22 5.70 0.06 -2.76 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.97 6.80 -51.93 -0.35 0.62 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.01 6.97 -51.93 -0.36 0.65 16 36 H 0.03 0.43 8.05 -51.93 -0.42 0.01 16 37 H 0.07 1.40 6.49 -51.93 -0.34 1.06 16 38 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.02 0.43 6.25 -51.93 -0.32 0.11 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.04 0.70 8.00 -51.93 -0.42 0.28 16 43 H 0.12 2.20 5.88 -51.93 -0.31 1.90 16 44 H 0.15 2.51 8.06 -52.48 -0.42 2.09 16 45 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 46 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -29.84 370.93 -9.61 -39.46 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.40 Total: 0.43 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -1.54 Total: -22.67 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.30 Total: -36.50 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.06 Total: -2.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.84 -9.61 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620651173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.702 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds