Wall clock time and date at job start Tue Mar 31 2020 01:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.52997 * 109.46940 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47137 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.46750 * 174.79136 * 6 5 4 8 8 C 1.46896 * 111.00074 * 71.94143 * 7 6 5 9 9 C 1.53001 * 109.46916 * 189.99830 * 8 7 6 10 10 C 1.50703 * 109.46801 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00324 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99763 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00328 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00025 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47027 * 90.00189 * 14 12 10 16 16 H 1.48503 * 109.46810 * 210.00038 * 14 12 10 17 17 H 1.48495 * 109.46790 * 329.99918 * 14 12 10 18 18 C 1.46897 * 110.99631 * 195.89440 * 7 6 5 19 19 C 1.50700 * 109.47486 * 75.35014 * 18 7 6 20 20 C 1.34520 * 125.78930 * 84.87365 * 19 18 7 21 21 C 1.41379 * 106.84383 * 180.02562 * 20 19 18 22 22 C 1.34516 * 106.83792 * 0.02562 * 21 20 19 23 23 O 1.34303 * 125.79239 * 264.56786 * 19 18 7 24 24 H 1.09003 * 109.47177 * 299.99706 * 1 2 3 25 25 H 1.09001 * 109.47403 * 60.00037 * 1 2 3 26 26 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46977 * 240.00162 * 2 1 3 28 28 H 1.09003 * 109.46684 * 120.00139 * 2 1 3 29 29 H 1.09003 * 109.46974 * 60.00169 * 3 2 1 30 30 H 1.08991 * 109.46990 * 299.99997 * 3 2 1 31 31 H 1.09003 * 109.46909 * 60.00423 * 4 3 2 32 32 H 1.09000 * 109.47319 * 300.00583 * 4 3 2 33 33 H 1.09003 * 109.47032 * 60.00271 * 5 4 3 34 34 H 1.09001 * 109.46759 * 300.00424 * 5 4 3 35 35 H 1.09000 * 109.46751 * 54.79165 * 6 5 4 36 36 H 1.08995 * 109.47035 * 294.79358 * 6 5 4 37 37 H 1.09001 * 109.46820 * 309.99559 * 8 7 6 38 38 H 1.09000 * 109.47159 * 69.99778 * 8 7 6 39 39 H 1.09001 * 109.47155 * 299.99524 * 9 8 7 40 40 H 1.09000 * 109.47249 * 60.00003 * 9 8 7 41 41 H 0.96995 * 120.00244 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.47548 * 315.35185 * 18 7 6 43 43 H 1.09005 * 109.47141 * 195.35304 * 18 7 6 44 44 H 1.08006 * 126.57288 * 0.04147 * 20 19 18 45 45 H 1.07990 * 126.58212 * 179.97438 * 21 20 19 46 46 H 1.08002 * 125.79081 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6100 2.8851 0.0013 7 7 6.0996 4.2644 -0.1238 8 6 5.8742 5.0176 1.1170 9 6 6.1623 6.5003 0.8730 10 6 5.9305 7.2731 2.1459 11 1 5.6102 6.7582 3.0396 12 6 6.1283 8.6374 2.1698 13 7 6.5188 9.2645 1.0817 14 14 5.8417 9.5953 3.7478 15 1 7.1026 9.6489 4.5302 16 1 5.4056 10.9757 3.4165 17 1 4.7889 8.9228 4.5507 18 6 7.5186 4.2869 -0.5030 19 6 7.6539 3.9409 -1.9635 20 6 7.5423 4.8032 -2.9899 21 6 7.7385 4.0573 -4.1748 22 6 7.9577 2.7836 -3.8016 23 8 7.9121 2.7203 -2.4608 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 3.9336 0.9287 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 3.7163 3.3986 0.8913 34 1 3.7169 3.3991 -0.8887 35 1 5.9732 2.2929 -0.8387 36 1 5.9733 2.4537 0.9340 37 1 4.8380 4.8960 1.4328 38 1 6.5379 4.6419 1.8958 39 1 7.1984 6.6220 0.5573 40 1 5.4986 6.8761 0.0943 41 1 6.6577 10.2243 1.0984 42 1 8.0662 3.5586 0.0951 43 1 7.9262 5.2823 -0.3262 44 1 7.3416 5.8622 -2.9218 45 1 7.7158 4.4369 -5.1855 46 1 8.1448 1.9538 -4.4670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620651173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:49 Heat of formation + Delta-G solvation = -32.085616 kcal Electronic energy + Delta-G solvation = -21687.419459 eV Core-core repulsion = 18576.931397 eV Total energy + Delta-G solvation = -3110.488062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.41982 -39.22459 -37.01274 -35.23595 -33.98906 -33.54539 -32.23929 -30.80879 -28.67102 -26.96823 -25.82424 -23.80648 -22.60839 -22.41692 -21.83174 -21.54649 -20.97325 -18.57735 -18.24809 -17.20977 -16.78650 -16.55602 -16.27816 -15.90174 -15.74744 -15.18750 -14.84725 -14.65458 -14.23088 -14.03402 -13.77972 -13.69764 -13.51694 -13.33395 -13.22304 -13.02469 -12.90586 -12.73501 -12.46869 -12.37226 -12.21172 -11.89324 -11.76629 -11.49495 -11.47923 -11.32177 -11.22096 -11.17960 -10.78121 -10.51944 -9.39657 -9.21826 -8.18467 -6.29406 0.83214 1.41199 1.42348 1.53394 1.75623 2.10428 2.41534 3.10577 3.15188 3.74909 3.89054 3.99584 4.09856 4.16985 4.19616 4.20749 4.35316 4.43486 4.44002 4.49222 4.55948 4.62375 4.69686 4.77484 4.84854 4.92099 4.96980 4.97897 5.04156 5.11134 5.12525 5.15311 5.24367 5.25662 5.28396 5.42234 5.46900 5.50847 5.54881 5.65533 5.66453 5.79548 6.06513 6.18466 6.31511 6.33031 6.87429 7.39577 8.93414 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.008982 B = 0.004771 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3116.710564 B = 5867.614106 C = 8538.214292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.119 4.119 4 C -0.108 4.108 5 C -0.109 4.109 6 C 0.059 3.941 7 N -0.545 5.545 8 C 0.080 3.920 9 C 0.037 3.963 10 C -0.543 4.543 11 H 0.060 0.940 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.963 3.037 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.263 1.263 18 C 0.133 3.867 19 C -0.013 4.013 20 C -0.212 4.212 21 C -0.225 4.225 22 C -0.038 4.038 23 O -0.189 6.189 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.025 0.975 39 H -0.003 1.003 40 H -0.009 1.009 41 H 0.263 0.737 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.168 0.832 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 -18.888 -6.706 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.147 4.147 6 C -0.068 4.068 7 N -0.269 5.269 8 C -0.047 4.047 9 C -0.001 4.001 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.195 4.195 13 N -0.570 5.570 14 Si 0.788 3.212 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.187 1.187 18 C 0.006 3.994 19 C -0.063 4.063 20 C -0.232 4.232 21 C -0.244 4.244 22 C -0.105 4.105 23 O -0.086 6.086 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.150 0.850 45 H 0.185 0.815 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.684 -18.755 -6.948 20.337 hybrid contribution 0.431 0.999 1.005 1.481 sum -3.253 -17.756 -5.943 19.005 Atomic orbital electron populations 1.21789 0.95582 1.01976 1.01752 1.21519 0.96140 0.96103 1.02214 1.21598 0.94899 0.97400 1.01757 1.21486 0.95739 0.95108 1.02254 1.21521 0.93846 0.97628 1.01677 1.22168 0.96328 0.88125 1.00202 1.61955 1.16154 1.14422 1.34412 1.22025 1.00190 0.94196 0.88248 1.18942 0.94990 0.90734 0.95398 1.21611 1.45792 0.93292 0.97461 0.92128 1.25923 0.94805 0.99006 0.99755 1.70105 1.47690 1.09522 1.29701 0.85473 0.78807 0.77636 0.79286 1.19790 1.20867 1.18714 1.20427 0.90112 1.01825 0.87030 1.22226 1.05402 0.82523 0.96119 1.21755 1.07563 1.00955 0.92956 1.22105 1.08340 0.94024 0.99938 1.24797 1.04863 1.00267 0.80548 1.83983 1.69963 1.31854 1.22762 0.92941 0.92879 0.91968 0.91734 0.91790 0.92513 0.92482 0.91643 0.91595 0.92831 0.92704 0.91021 0.94498 0.91178 0.95649 0.98461 0.99015 0.92825 0.92579 0.89046 0.85023 0.81489 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.12 -1.99 5.93 30.60 0.18 -1.81 16 3 C -0.12 -2.35 5.21 30.59 0.16 -2.19 16 4 C -0.11 -2.31 5.21 30.59 0.16 -2.15 16 5 C -0.11 -3.04 5.17 30.60 0.16 -2.88 16 6 C 0.06 1.79 4.79 86.30 0.41 2.21 16 7 N -0.54 -20.29 4.38 -900.80 -3.95 -24.24 16 8 C 0.08 3.40 4.75 86.30 0.41 3.81 16 9 C 0.04 1.95 4.94 29.85 0.15 2.10 16 10 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 14 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 C 0.13 4.79 5.38 85.56 0.46 5.25 16 19 C -0.01 -0.42 6.14 24.83 0.15 -0.27 16 20 C -0.21 -7.12 10.81 22.19 0.24 -6.88 16 21 C -0.23 -5.82 10.91 22.19 0.24 -5.58 16 22 C -0.04 -0.85 12.09 66.97 0.81 -0.04 16 23 O -0.19 -5.51 10.22 -2.50 -0.03 -5.53 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.60 6.80 -2.39 -0.02 1.59 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 2.11 6.97 -2.39 -0.02 2.09 16 36 H 0.04 1.07 8.05 -2.39 -0.02 1.05 16 37 H 0.07 2.92 6.49 -2.39 -0.02 2.91 16 38 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 39 H 0.00 -0.16 6.25 -2.39 -0.01 -0.17 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.06 1.82 8.00 -2.39 -0.02 1.80 16 43 H 0.09 3.71 5.88 -2.38 -0.01 3.69 16 44 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.17 3.37 8.06 -2.92 -0.02 3.35 16 46 H 0.24 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -65.69 370.93 4.19 -61.51 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.91 Total: 18.53 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 4.94 Total: -40.04 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -3.66 Total: -80.80 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.03 Total: -5.53 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -65.69 4.19 -61.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620651173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.421 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds