Wall clock time and date at job start Tue Mar 31 2020 01:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.43474 * 2 1 4 4 C 1.54887 * 110.48778 * 237.31729 * 2 1 3 5 5 C 1.54897 * 102.74744 * 203.37881 * 4 2 1 6 6 C 1.54264 * 104.19675 * 37.94098 * 5 4 2 7 7 H 1.08994 * 110.07478 * 95.69638 * 6 5 4 8 8 C 1.53000 * 110.03002 * 217.10856 * 6 5 4 9 9 C 1.50703 * 109.46912 * 292.16582 * 8 6 5 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47398 * 89.99557 * 12 11 9 14 14 H 1.08003 * 120.00015 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00048 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00473 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99797 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47398 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47236 * 120.00416 * 17 15 13 20 20 H 1.48507 * 109.47103 * 240.00011 * 17 15 13 21 21 C 1.46505 * 119.99832 * 359.97438 * 11 9 8 22 22 C 1.52994 * 109.47022 * 90.00138 * 21 11 9 23 23 C 1.53002 * 117.50015 * 243.74681 * 22 21 11 24 24 C 1.53006 * 117.50026 * 175.08700 * 22 21 11 25 25 C 1.53874 * 106.59648 * 336.38835 * 6 5 4 26 26 H 1.08999 * 109.47324 * 297.45652 * 1 2 3 27 27 H 1.08992 * 109.47428 * 57.46115 * 1 2 3 28 28 H 1.09003 * 109.47081 * 177.46206 * 1 2 3 29 29 H 1.08998 * 110.75286 * 321.68985 * 4 2 1 30 30 H 1.08998 * 110.75893 * 85.06440 * 4 2 1 31 31 H 1.08998 * 110.48304 * 279.25794 * 5 4 2 32 32 H 1.09000 * 110.48408 * 156.62265 * 5 4 2 33 33 H 1.09002 * 109.47398 * 52.16660 * 8 6 5 34 34 H 1.09001 * 109.47194 * 172.16841 * 8 6 5 35 35 H 1.09000 * 109.47082 * 209.99555 * 12 11 9 36 36 H 1.09004 * 109.46754 * 329.99821 * 12 11 9 37 37 H 0.96999 * 120.00725 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.47024 * 210.00620 * 21 11 9 39 39 H 1.09000 * 109.46875 * 330.00379 * 21 11 9 40 40 H 1.09000 * 115.55029 * 29.42030 * 22 21 11 41 41 H 1.09000 * 117.50223 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.50012 * 145.01994 * 23 22 21 43 43 H 1.08997 * 117.50013 * 214.98397 * 24 22 21 44 44 H 1.09005 * 117.49639 * 359.97438 * 24 22 21 45 45 H 1.09000 * 110.03070 * 119.29170 * 25 6 5 46 46 H 1.09006 * 110.03299 * 240.66416 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7835 -1.2212 5 6 3.4907 -1.1988 -0.7584 6 6 3.3166 -1.5395 0.7360 7 1 3.1696 -2.6123 0.8605 8 6 4.5465 -1.0844 1.5241 9 6 5.7348 -1.9230 1.1290 10 8 5.6100 -2.7987 0.2993 11 7 6.9359 -1.7005 1.6985 12 6 8.0910 -2.5153 1.3142 13 6 8.8017 -1.8645 0.1555 14 1 8.4302 -0.9365 -0.2534 15 6 9.9260 -2.4538 -0.3825 16 7 10.3781 -3.5841 0.1150 17 14 10.8072 -1.6467 -1.8183 18 1 10.1034 -0.3929 -2.1896 19 1 12.2053 -1.3332 -1.4281 20 1 10.8132 -2.5727 -2.9793 21 6 7.0865 -0.6430 2.7012 22 6 6.8191 -1.2184 4.0934 23 6 5.6179 -0.6696 4.8660 24 6 7.0393 -0.2954 5.2936 25 6 2.0700 -0.7772 1.2182 26 1 -0.3634 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 1.4581 -1.6618 -1.4201 30 1 2.1252 -0.1408 -2.0999 31 1 4.1898 -0.3717 -0.8823 32 1 3.8316 -2.0737 -1.3120 33 1 4.7519 -0.0368 1.3040 34 1 4.3580 -1.2013 2.5913 35 1 8.7745 -2.5983 2.1592 36 1 7.7531 -3.5093 1.0211 37 1 11.1689 -3.9989 -0.2638 38 1 8.1007 -0.2458 2.6608 39 1 6.3747 0.1565 2.4957 40 1 7.0590 -2.2742 4.2197 41 1 5.0179 0.1012 4.3823 42 1 5.0678 -1.3641 5.5009 43 1 7.4238 -0.7439 6.2096 44 1 7.3751 0.7217 5.0914 45 1 1.3177 -1.4802 1.5760 46 1 2.3410 -0.0837 2.0144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128558317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:07 Heat of formation + Delta-G solvation = -41.793865 kcal Electronic energy + Delta-G solvation = -22648.534199 eV Core-core repulsion = 19537.625156 eV Total energy + Delta-G solvation = -3110.909044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.54908 -38.09091 -37.02747 -34.35897 -32.63306 -32.22722 -29.57684 -28.08768 -26.94328 -25.80847 -24.13291 -22.44026 -22.28445 -20.63610 -20.24646 -19.33188 -18.25497 -16.60909 -16.42749 -15.64050 -15.23729 -15.12573 -14.59241 -14.45993 -14.09322 -13.69606 -13.48977 -13.05578 -12.95467 -12.61037 -12.48658 -12.17219 -11.93114 -11.53642 -11.44729 -11.38222 -11.20317 -10.89934 -10.83954 -10.71651 -10.62072 -10.58375 -10.45618 -10.33364 -10.32028 -10.17684 -10.03662 -9.77489 -9.55910 -8.72015 -8.40840 -7.59873 -6.01339 -4.05660 3.31084 3.38552 3.42210 3.55228 3.84140 4.07865 4.47155 4.63971 4.73541 4.79486 4.91879 5.05202 5.07725 5.25047 5.32603 5.36655 5.39667 5.51195 5.51967 5.60658 5.63887 5.69262 5.71406 5.81106 5.82820 5.89180 5.94637 5.95999 6.02190 6.05931 6.11953 6.15575 6.19152 6.25543 6.27911 6.46543 6.50145 6.62384 6.74136 7.13571 7.49813 7.61916 7.95907 8.27908 8.51524 8.95148 9.20457 9.59643 11.06742 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.005331 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.411488 B = 5250.917809 C = 6857.324119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.122 4.122 5 C -0.112 4.112 6 C -0.074 4.074 7 H 0.077 0.923 8 C -0.135 4.135 9 C 0.506 3.494 10 O -0.539 6.539 11 N -0.598 5.598 12 C 0.246 3.754 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.143 3.857 22 C -0.164 4.164 23 C -0.185 4.185 24 C -0.177 4.177 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.238 8.795 6.787 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.150 4.150 6 C -0.093 4.093 7 H 0.095 0.905 8 C -0.175 4.175 9 C 0.293 3.707 10 O -0.417 6.417 11 N -0.329 5.329 12 C 0.127 3.873 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.019 3.981 22 C -0.183 4.183 23 C -0.222 4.222 24 C -0.215 4.215 25 C -0.154 4.154 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.081 0.919 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.133 8.179 6.314 18.324 hybrid contribution 0.732 0.441 -0.607 1.049 sum -14.401 8.620 5.707 17.727 Atomic orbital electron populations 1.21805 0.95467 1.01609 1.01174 1.21970 0.94961 0.99239 0.95509 0.91086 1.22604 0.96990 0.99355 0.96977 1.22359 0.95630 1.01681 0.95304 1.21489 0.92454 1.00353 0.95024 0.90476 1.21913 0.94117 1.00139 1.01317 1.20389 0.83988 0.84626 0.81657 1.90644 1.84491 1.33786 1.32778 1.48194 1.10383 1.35130 1.39189 1.19249 0.81480 0.91339 0.95277 1.21476 1.10329 1.08399 1.15969 0.92504 1.24925 0.97148 0.94913 0.97117 1.69941 1.24059 1.17666 1.41781 0.86473 0.79233 0.79439 0.82459 1.19837 1.21005 1.20909 1.20981 1.02529 0.89615 0.84999 1.22946 1.02280 0.99872 0.93229 1.23051 0.91128 1.03672 1.04358 1.22906 0.99287 1.00517 0.98769 1.22311 0.97023 0.98655 0.97371 0.92997 0.92993 0.92722 0.91717 0.92083 0.92089 0.90622 0.89947 0.89600 0.95168 0.93976 0.92844 0.89688 0.91520 0.87475 0.88911 0.89232 0.89052 0.88791 0.91923 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.12 37.16 0.34 -0.92 16 2 C -0.10 -1.03 3.46 -88.97 -0.31 -1.33 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.45 6.33 -24.74 -0.16 -1.60 16 5 C -0.11 -1.69 5.43 -25.07 -0.14 -1.82 16 6 C -0.07 -1.06 2.55 -89.50 -0.23 -1.28 16 7 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 8 C -0.13 -2.02 3.38 -27.88 -0.09 -2.11 16 9 C 0.51 10.48 7.46 -10.98 -0.08 10.40 16 10 O -0.54 -13.43 14.40 5.56 0.08 -13.35 16 11 N -0.60 -12.63 2.46 -175.06 -0.43 -13.06 16 12 C 0.25 6.46 5.16 -5.20 -0.03 6.44 16 13 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 14 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 17 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.14 2.34 5.49 -4.04 -0.02 2.32 16 22 C -0.16 -2.31 5.95 -90.62 -0.54 -2.84 16 23 C -0.19 -2.05 9.17 -26.69 -0.24 -2.30 16 24 C -0.18 -2.00 10.26 -26.69 -0.27 -2.28 16 25 C -0.12 -1.28 6.03 -25.61 -0.15 -1.43 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.96 7.76 -51.93 -0.40 0.55 16 32 H 0.08 1.33 7.66 -51.93 -0.40 0.93 16 33 H 0.08 1.13 7.26 -51.93 -0.38 0.75 16 34 H 0.09 1.13 6.82 -51.93 -0.35 0.77 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.46 8.07 -51.93 -0.42 1.05 16 39 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 40 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.09 0.93 7.86 -51.93 -0.41 0.52 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.65 7.84 -51.93 -0.41 0.24 16 46 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -31.77 363.58 -9.97 -41.74 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.47 Total: 0.60 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.35 Total: -12.36 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.31 Total: -39.15 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.77 -9.97 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128558317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.051 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds