Wall clock time and date at job start Tue Mar 31 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.01895 * 2 1 4 4 C 1.54273 * 110.07278 * 238.57890 * 2 1 3 5 5 C 1.54888 * 104.19469 * 217.08410 * 4 2 1 6 6 C 1.54882 * 102.74855 * 37.94442 * 5 4 2 7 7 H 1.08998 * 110.60130 * 80.79161 * 6 5 4 8 8 C 1.53002 * 110.48804 * 203.37440 * 6 5 4 9 9 C 1.50695 * 109.47207 * 289.77963 * 8 6 5 10 10 O 1.21280 * 120.00245 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99861 * 180.02562 * 9 8 6 12 12 C 1.46919 * 120.63238 * 359.71324 * 11 9 8 13 13 C 1.52763 * 109.01074 * 233.59006 * 12 11 9 14 14 C 1.53043 * 109.38000 * 305.58531 * 13 12 11 15 15 C 1.50707 * 109.44703 * 181.25270 * 14 13 12 16 16 H 1.08001 * 119.99677 * 239.93589 * 15 14 13 17 17 C 1.37869 * 119.99737 * 59.94144 * 15 14 13 18 18 N 1.31514 * 120.00080 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99728 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47531 * 59.99964 * 19 17 15 21 21 H 1.48504 * 109.47385 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47274 * 300.00001 * 19 17 15 23 23 C 1.53042 * 109.53676 * 61.24269 * 14 13 12 24 24 C 1.46931 * 120.62767 * 179.97438 * 11 9 8 25 25 C 1.53873 * 110.03127 * 121.38989 * 2 1 3 26 26 H 1.08994 * 109.47071 * 299.30303 * 1 2 3 27 27 H 1.09005 * 109.46948 * 59.29598 * 1 2 3 28 28 H 1.08999 * 109.47520 * 179.29957 * 1 2 3 29 29 H 1.09001 * 110.48533 * 335.76669 * 4 2 1 30 30 H 1.08999 * 110.48202 * 98.40596 * 4 2 1 31 31 H 1.08998 * 110.75533 * 279.63020 * 5 4 2 32 32 H 1.09002 * 110.90769 * 156.32842 * 5 4 2 33 33 H 1.09009 * 109.46788 * 49.77752 * 8 6 5 34 34 H 1.08997 * 109.47337 * 169.77247 * 8 6 5 35 35 H 1.09004 * 109.58656 * 353.42230 * 12 11 9 36 36 H 1.08996 * 109.58946 * 113.84552 * 12 11 9 37 37 H 1.08997 * 109.56655 * 185.55692 * 13 12 11 38 38 H 1.08994 * 109.38763 * 65.51134 * 13 12 11 39 39 H 1.08999 * 109.46502 * 301.21911 * 14 13 12 40 40 H 0.97008 * 119.99460 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49886 * 178.68337 * 23 14 13 42 42 H 1.08995 * 109.49952 * 58.58091 * 23 14 13 43 43 H 1.09000 * 109.58559 * 246.15175 * 24 11 9 44 44 H 1.09004 * 109.58868 * 6.43299 * 24 11 9 45 45 H 1.08996 * 110.03511 * 238.61485 * 25 2 1 46 46 H 1.09002 * 110.03347 * 0.04560 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7554 -1.2365 5 6 3.3150 -1.4997 -0.7181 6 6 2.8884 -1.9396 0.7044 7 1 2.2794 -2.8425 0.6601 8 6 4.1182 -2.1676 1.5857 9 6 4.8458 -3.4034 1.1228 10 8 4.4223 -4.0395 0.1810 11 7 5.9667 -3.8024 1.7560 12 6 6.4949 -3.0395 2.8951 13 6 7.9594 -2.6967 2.6283 14 6 8.7330 -3.9803 2.3182 15 6 10.1843 -3.6476 2.0850 16 1 10.6463 -3.8813 1.1372 17 6 10.9221 -3.0449 3.0816 18 7 10.3593 -2.7600 4.2356 19 14 12.7211 -2.6331 2.7928 20 1 12.8368 -1.6977 1.6452 21 1 13.2848 -1.9961 4.0101 22 1 13.4722 -3.8788 2.4937 23 6 8.1526 -4.6372 1.0637 24 6 6.6868 -5.0054 1.3166 25 6 2.0571 -0.7530 1.2341 26 1 -0.3633 0.5029 0.8961 27 1 -0.3633 0.5248 -0.8837 28 1 -0.3634 -1.0276 -0.0126 29 1 1.3159 -1.4664 -1.5965 30 1 2.3306 -0.0535 -2.0251 31 1 4.1718 -0.8274 -0.6738 32 1 3.5377 -2.3667 -1.3400 33 1 4.7822 -1.3062 1.5127 34 1 3.8040 -2.2974 2.6213 35 1 5.9221 -2.1200 3.0162 36 1 6.4223 -3.6396 3.8021 37 1 8.3883 -2.2172 3.5082 38 1 8.0232 -2.0189 1.7771 39 1 8.6488 -4.6675 3.1601 40 1 10.8784 -2.3356 4.9367 41 1 8.7189 -5.5388 0.8300 42 1 8.2140 -3.9414 0.2271 43 1 6.6302 -5.7689 2.0925 44 1 6.2390 -5.3842 0.3979 45 1 2.6860 -0.0943 1.8329 46 1 1.2229 -1.1191 1.8326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334198327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:19 Heat of formation + Delta-G solvation = -75.216172 kcal Electronic energy + Delta-G solvation = -22542.210561 eV Core-core repulsion = 19429.852218 eV Total energy + Delta-G solvation = -3112.358344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91173 -38.38573 -36.68835 -33.50346 -32.69957 -31.23328 -30.13327 -29.53622 -27.32818 -25.98935 -24.28729 -22.82358 -22.21483 -20.57339 -19.78030 -19.32972 -18.22833 -16.88300 -16.14057 -15.89651 -15.34571 -14.85221 -14.67436 -14.52933 -13.65399 -13.45575 -13.25342 -13.19100 -13.04763 -12.69707 -12.56266 -12.51592 -12.13952 -11.73220 -11.59054 -11.28781 -11.04068 -10.93781 -10.78793 -10.76071 -10.67340 -10.60520 -10.57542 -10.39245 -10.35581 -10.10207 -9.65068 -9.28653 -9.17439 -8.92443 -8.39030 -7.96740 -6.04632 -4.10762 3.06125 3.28695 3.33394 3.36566 3.53195 4.39582 4.50914 4.57091 4.66232 4.97436 5.11874 5.21223 5.24866 5.35342 5.44848 5.46899 5.54873 5.60558 5.64291 5.73160 5.77185 5.83433 5.86521 5.92388 5.96107 6.02514 6.04755 6.10104 6.11901 6.16907 6.31851 6.33476 6.41622 6.46849 6.52148 6.66458 6.90543 7.04108 7.15451 7.27211 7.65044 7.90720 7.97945 8.03043 8.38886 8.63734 8.92423 9.54365 11.00831 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028643 B = 0.003535 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.312661 B = 7918.008850 C = 8243.723404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.074 4.074 7 H 0.080 0.920 8 C -0.133 4.133 9 C 0.510 3.490 10 O -0.558 6.558 11 N -0.602 5.602 12 C 0.103 3.897 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.123 4.123 24 C 0.111 3.889 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 4.603 -3.984 17.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.092 4.092 7 H 0.098 0.902 8 C -0.173 4.173 9 C 0.299 3.701 10 O -0.438 6.438 11 N -0.335 5.335 12 C -0.019 4.019 13 C -0.163 4.163 14 C 0.031 3.969 15 C -0.550 4.550 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.011 4.011 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.101 4.348 -4.278 17.218 hybrid contribution 1.189 0.346 0.081 1.240 sum -14.913 4.693 -4.196 16.187 Atomic orbital electron populations 1.21887 0.95341 1.01675 1.01238 1.21738 0.95362 0.99325 0.95181 0.91296 1.22446 0.97744 0.98744 0.96861 1.22541 0.96862 0.99981 0.96085 1.21720 0.94801 0.98162 0.94554 0.90184 1.21766 0.97539 0.97019 1.00969 1.20601 0.80640 0.86250 0.82618 1.90611 1.67109 1.57204 1.28868 1.48277 1.24880 1.27602 1.32714 1.21942 0.97838 0.94605 0.87483 1.21944 0.90391 1.00847 1.03154 1.18625 0.93859 0.92508 0.91942 1.21176 0.94945 1.39225 0.99701 0.92780 1.24953 0.98220 0.95655 0.95119 1.69827 1.36189 1.42745 1.04374 0.86676 0.85300 0.78652 0.77479 1.20332 1.21302 1.20312 1.22007 0.92664 1.00499 1.00937 1.21674 0.93469 0.86176 0.99761 1.22322 0.99221 0.96826 0.97220 0.92930 0.92994 0.92637 0.91714 0.92087 0.91960 0.90516 0.88965 0.89309 0.91441 0.92057 0.87758 0.94322 0.95501 0.92927 0.92250 0.93027 0.92419 0.90431 0.91688 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.84 37.16 0.33 -0.84 16 2 C -0.10 -0.91 3.50 -89.50 -0.31 -1.22 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.24 6.36 -25.07 -0.16 -1.40 16 5 C -0.12 -1.47 5.76 -24.74 -0.14 -1.61 16 6 C -0.07 -0.89 2.45 -88.96 -0.22 -1.11 16 7 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 8 C -0.13 -1.75 3.40 -27.88 -0.09 -1.84 16 9 C 0.51 8.72 7.51 -10.99 -0.08 8.63 16 10 O -0.56 -10.90 14.14 5.56 0.08 -10.82 16 11 N -0.60 -10.78 2.98 -173.00 -0.52 -11.29 16 12 C 0.10 1.82 6.31 -3.94 -0.02 1.79 16 13 C -0.12 -2.72 5.14 -26.83 -0.14 -2.86 16 14 C 0.05 1.16 2.07 -91.72 -0.19 0.97 16 15 C -0.51 -13.62 8.56 -34.44 -0.29 -13.91 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.29 11.30 55.43 0.63 -23.67 16 19 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -2.53 5.30 -26.59 -0.14 -2.68 16 24 C 0.11 2.06 6.44 -3.69 -0.02 2.04 16 25 C -0.12 -1.17 6.03 -25.61 -0.15 -1.32 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.08 1.12 7.28 -51.93 -0.38 0.75 16 33 H 0.09 1.16 7.56 -51.92 -0.39 0.77 16 34 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16 35 H 0.07 1.00 5.94 -51.93 -0.31 0.69 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 45 H 0.06 0.61 7.84 -51.93 -0.41 0.21 16 46 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -28.18 348.82 -9.71 -37.90 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.40 Total: 0.67 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.74 Total: -13.81 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.11 Total: -34.96 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.18 -9.71 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334198327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.320 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds