Wall clock time and date at job start Tue Mar 31 2020 01:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.01895 * 2 1 4 4 C 1.54273 * 110.07278 * 238.57890 * 2 1 3 5 5 C 1.54888 * 104.19469 * 217.08410 * 4 2 1 6 6 C 1.54882 * 102.74855 * 37.94442 * 5 4 2 7 7 H 1.08998 * 110.60130 * 80.79161 * 6 5 4 8 8 C 1.53002 * 110.48804 * 203.37440 * 6 5 4 9 9 C 1.50695 * 109.47207 * 289.77963 * 8 6 5 10 10 O 1.21280 * 120.00245 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99861 * 180.02562 * 9 8 6 12 12 C 1.46919 * 120.63238 * 359.71324 * 11 9 8 13 13 C 1.52763 * 109.01074 * 233.59006 * 12 11 9 14 14 C 1.53043 * 109.38000 * 305.58531 * 13 12 11 15 15 C 1.50707 * 109.44703 * 181.25270 * 14 13 12 16 16 H 1.08001 * 119.99677 * 239.93589 * 15 14 13 17 17 C 1.37869 * 119.99737 * 59.94144 * 15 14 13 18 18 N 1.31514 * 120.00080 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99728 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47531 * 59.99964 * 19 17 15 21 21 H 1.48504 * 109.47385 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47274 * 300.00001 * 19 17 15 23 23 C 1.53042 * 109.53676 * 61.24269 * 14 13 12 24 24 C 1.46931 * 120.62767 * 179.97438 * 11 9 8 25 25 C 1.53873 * 110.03127 * 121.38989 * 2 1 3 26 26 H 1.08994 * 109.47071 * 299.30303 * 1 2 3 27 27 H 1.09005 * 109.46948 * 59.29598 * 1 2 3 28 28 H 1.08999 * 109.47520 * 179.29957 * 1 2 3 29 29 H 1.09001 * 110.48533 * 335.76669 * 4 2 1 30 30 H 1.08999 * 110.48202 * 98.40596 * 4 2 1 31 31 H 1.08998 * 110.75533 * 279.63020 * 5 4 2 32 32 H 1.09002 * 110.90769 * 156.32842 * 5 4 2 33 33 H 1.09009 * 109.46788 * 49.77752 * 8 6 5 34 34 H 1.08997 * 109.47337 * 169.77247 * 8 6 5 35 35 H 1.09004 * 109.58656 * 353.42230 * 12 11 9 36 36 H 1.08996 * 109.58946 * 113.84552 * 12 11 9 37 37 H 1.08997 * 109.56655 * 185.55692 * 13 12 11 38 38 H 1.08994 * 109.38763 * 65.51134 * 13 12 11 39 39 H 1.08999 * 109.46502 * 301.21911 * 14 13 12 40 40 H 0.97008 * 119.99460 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49886 * 178.68337 * 23 14 13 42 42 H 1.08995 * 109.49952 * 58.58091 * 23 14 13 43 43 H 1.09000 * 109.58559 * 246.15175 * 24 11 9 44 44 H 1.09004 * 109.58868 * 6.43299 * 24 11 9 45 45 H 1.08996 * 110.03511 * 238.61485 * 25 2 1 46 46 H 1.09002 * 110.03347 * 0.04560 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7554 -1.2365 5 6 3.3150 -1.4997 -0.7181 6 6 2.8884 -1.9396 0.7044 7 1 2.2794 -2.8425 0.6601 8 6 4.1182 -2.1676 1.5857 9 6 4.8458 -3.4034 1.1228 10 8 4.4223 -4.0395 0.1810 11 7 5.9667 -3.8024 1.7560 12 6 6.4949 -3.0395 2.8951 13 6 7.9594 -2.6967 2.6283 14 6 8.7330 -3.9803 2.3182 15 6 10.1843 -3.6476 2.0850 16 1 10.6463 -3.8813 1.1372 17 6 10.9221 -3.0449 3.0816 18 7 10.3593 -2.7600 4.2356 19 14 12.7211 -2.6331 2.7928 20 1 12.8368 -1.6977 1.6452 21 1 13.2848 -1.9961 4.0101 22 1 13.4722 -3.8788 2.4937 23 6 8.1526 -4.6372 1.0637 24 6 6.6868 -5.0054 1.3166 25 6 2.0571 -0.7530 1.2341 26 1 -0.3633 0.5029 0.8961 27 1 -0.3633 0.5248 -0.8837 28 1 -0.3634 -1.0276 -0.0126 29 1 1.3159 -1.4664 -1.5965 30 1 2.3306 -0.0535 -2.0251 31 1 4.1718 -0.8274 -0.6738 32 1 3.5377 -2.3667 -1.3400 33 1 4.7822 -1.3062 1.5127 34 1 3.8040 -2.2974 2.6213 35 1 5.9221 -2.1200 3.0162 36 1 6.4223 -3.6396 3.8021 37 1 8.3883 -2.2172 3.5082 38 1 8.0232 -2.0189 1.7771 39 1 8.6488 -4.6675 3.1601 40 1 10.8784 -2.3356 4.9367 41 1 8.7189 -5.5388 0.8300 42 1 8.2140 -3.9414 0.2271 43 1 6.6302 -5.7689 2.0925 44 1 6.2390 -5.3842 0.3979 45 1 2.6860 -0.0943 1.8329 46 1 1.2229 -1.1191 1.8326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334198327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:19 Heat of formation + Delta-G solvation = -88.157194 kcal Electronic energy + Delta-G solvation = -22542.771726 eV Core-core repulsion = 19429.852218 eV Total energy + Delta-G solvation = -3112.919508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24405 -39.42138 -38.20501 -35.30803 -33.78448 -32.85492 -31.71121 -30.47724 -28.51896 -27.52413 -25.31932 -24.42452 -23.77893 -21.79543 -21.03226 -20.24521 -19.69514 -18.56918 -17.82535 -17.09950 -16.52210 -16.47046 -15.96483 -15.75911 -14.91985 -14.82193 -14.72049 -14.30669 -14.30297 -14.07778 -13.89689 -13.67650 -13.32939 -13.12555 -13.07887 -12.80371 -12.62999 -12.46218 -12.14071 -12.00462 -11.85447 -11.60860 -11.57820 -11.52086 -11.47177 -11.43730 -11.17825 -11.00813 -10.89469 -10.57738 -10.38005 -9.50232 -8.07960 -6.21159 1.42564 1.43152 1.50496 1.71411 2.15892 2.44005 3.18440 3.53984 3.69628 3.80886 3.90069 4.14329 4.24115 4.29091 4.36792 4.38181 4.50249 4.55456 4.60501 4.61214 4.65301 4.74861 4.76290 4.81842 4.84946 4.88047 4.94531 4.99412 5.08091 5.13189 5.18613 5.20249 5.25278 5.27755 5.37933 5.41496 5.44816 5.57114 5.58300 5.64318 5.66458 5.98894 6.14302 6.39468 6.58351 6.87770 7.26215 7.46403 8.95222 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028643 B = 0.003535 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.312661 B = 7918.008850 C = 8243.723404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.072 4.072 7 H 0.064 0.936 8 C -0.128 4.128 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.608 5.608 12 C 0.114 3.886 13 C -0.116 4.116 14 C 0.046 3.954 15 C -0.537 4.537 16 H 0.045 0.955 17 C 0.019 3.981 18 N -0.910 5.910 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.275 1.275 23 C -0.113 4.113 24 C 0.117 3.883 25 C -0.113 4.113 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.003 0.997 40 H 0.262 0.738 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.106 5.896 -3.528 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.158 4.158 6 C -0.091 4.091 7 H 0.083 0.917 8 C -0.168 4.168 9 C 0.297 3.703 10 O -0.467 6.467 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.155 4.155 14 C 0.028 3.972 15 C -0.575 4.575 16 H 0.063 0.937 17 C -0.180 4.180 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.151 4.151 24 C -0.006 4.006 25 C -0.150 4.150 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.046 0.954 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.281 5.643 -3.823 18.577 hybrid contribution 1.580 -0.101 -0.103 1.587 sum -15.701 5.542 -3.926 17.107 Atomic orbital electron populations 1.21868 0.94314 1.01705 1.02058 1.21745 0.96228 0.99348 0.94145 0.90560 1.22430 0.96604 0.98747 0.97705 1.22511 0.97912 0.99052 0.96314 1.21689 0.94532 0.98627 0.94217 0.91718 1.21843 0.97554 0.95018 1.02345 1.21335 0.80166 0.86962 0.81844 1.90604 1.67713 1.58332 1.30022 1.48346 1.25270 1.27406 1.32972 1.21827 0.95394 0.96203 0.87340 1.21715 0.93040 0.99275 1.01437 1.18598 0.93255 0.93149 0.92244 1.21516 0.96764 1.39689 0.99546 0.93653 1.25613 1.01817 0.95586 0.94999 1.69934 1.37336 1.42925 1.04786 0.85775 0.80970 0.78382 0.77475 1.20049 1.20702 1.20095 1.21850 0.94248 0.99982 0.99021 1.21537 0.91925 0.86963 1.00182 1.22299 0.99283 0.95852 0.97573 0.91941 0.92411 0.93003 0.91879 0.91410 0.92241 0.93406 0.87855 0.86850 0.87913 0.91634 0.90098 0.95434 0.97912 0.92863 0.92084 0.94181 0.91486 0.90433 0.90625 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.84 71.98 0.64 -1.30 16 2 C -0.10 -1.55 3.50 -10.07 -0.04 -1.58 16 3 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -2.26 6.36 31.67 0.20 -2.05 16 5 C -0.12 -2.94 5.76 31.88 0.18 -2.76 16 6 C -0.07 -1.62 2.45 -9.72 -0.02 -1.65 16 7 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 8 C -0.13 -3.05 3.40 29.85 0.10 -2.95 16 9 C 0.51 16.66 7.51 87.65 0.66 17.32 16 10 O -0.59 -22.71 14.14 -3.03 -0.04 -22.76 16 11 N -0.61 -21.05 2.98 -819.65 -2.44 -23.49 16 12 C 0.11 3.84 6.31 86.22 0.54 4.38 16 13 C -0.12 -5.05 5.14 30.53 0.16 -4.89 16 14 C 0.05 2.22 2.07 -11.51 -0.02 2.19 16 15 C -0.54 -29.01 8.56 25.60 0.22 -28.79 16 16 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 17 C 0.02 1.02 5.30 84.65 0.45 1.47 16 18 N -0.91 -49.85 11.30 21.44 0.24 -49.60 16 19 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 C -0.11 -4.70 5.30 30.69 0.16 -4.54 16 24 C 0.12 4.28 6.44 86.38 0.56 4.83 16 25 C -0.11 -1.90 6.03 31.32 0.19 -1.71 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 29 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.46 7.97 -2.39 -0.02 1.44 16 32 H 0.05 1.43 7.28 -2.39 -0.02 1.41 16 33 H 0.10 2.29 7.56 -2.38 -0.02 2.27 16 34 H 0.11 2.18 7.95 -2.39 -0.02 2.16 16 35 H 0.10 2.73 5.94 -2.39 -0.01 2.72 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 45 H 0.08 1.14 7.84 -2.39 -0.02 1.12 16 46 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16 Total: -1.00 -60.89 348.82 4.68 -56.21 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.92 Total: 16.96 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.98 Total: -22.01 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -2.20 Total: -73.09 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.04 Total: -22.76 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.89 4.68 -56.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334198327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.946 kcal (2) G-P(sol) polarization free energy of solvation -60.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds