Wall clock time and date at job start Tue Mar 31 2020 02:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30842 * 125.89638 * 2 1 4 4 N 1.40082 * 108.20441 * 180.14328 * 3 2 1 5 5 C 1.46495 * 126.03990 * 179.85019 * 4 3 2 6 6 C 1.53008 * 109.46881 * 94.69404 * 5 4 3 7 7 C 1.52997 * 109.47652 * 214.69636 * 5 4 3 8 8 C 1.34952 * 107.92686 * 359.59352 * 4 3 2 9 9 C 1.35321 * 107.74388 * 0.23915 * 8 4 3 10 10 C 1.50699 * 126.04131 * 180.02562 * 9 8 4 11 11 N 1.46896 * 109.47337 * 110.48475 * 10 9 8 12 12 C 1.46899 * 111.00048 * 163.12241 * 11 10 9 13 13 C 1.50702 * 109.46829 * 196.83093 * 12 11 10 14 14 H 1.08001 * 119.99934 * 4.75737 * 13 12 11 15 15 C 1.37876 * 119.99617 * 184.75580 * 13 12 11 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99729 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47295 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47218 * 120.00501 * 17 15 13 20 20 H 1.48497 * 109.47521 * 240.00198 * 17 15 13 21 21 C 1.46907 * 110.99939 * 287.07328 * 11 10 9 22 22 C 1.53003 * 109.46718 * 318.34437 * 21 11 10 23 23 C 1.52998 * 109.47122 * 78.34056 * 21 11 10 24 24 H 1.09000 * 109.46784 * 274.89570 * 1 2 3 25 25 H 1.08997 * 109.47186 * 34.89542 * 1 2 3 26 26 H 1.08997 * 109.46798 * 154.89718 * 1 2 3 27 27 H 1.09004 * 109.47146 * 334.70018 * 5 4 3 28 28 H 1.09004 * 109.46732 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46729 * 60.00358 * 6 5 4 30 30 H 1.08997 * 109.46999 * 300.00468 * 6 5 4 31 31 H 1.08994 * 109.47462 * 59.99800 * 7 5 4 32 32 H 1.09001 * 109.47444 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46971 * 299.99860 * 7 5 4 34 34 H 1.07991 * 126.13126 * 180.21390 * 8 4 3 35 35 H 1.09006 * 109.46742 * 230.48615 * 10 9 8 36 36 H 1.09003 * 109.46717 * 350.47978 * 10 9 8 37 37 H 1.08999 * 109.46625 * 316.82638 * 12 11 10 38 38 H 1.08998 * 109.47366 * 76.83481 * 12 11 10 39 39 H 0.97004 * 119.99740 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.47067 * 198.34639 * 21 11 10 41 41 H 1.09000 * 109.47363 * 71.32351 * 22 21 11 42 42 H 1.09003 * 109.47016 * 191.32224 * 22 21 11 43 43 H 1.08995 * 109.47268 * 311.32093 * 22 21 11 44 44 H 1.08998 * 109.47255 * 51.61776 * 23 21 11 45 45 H 1.08994 * 109.47382 * 171.61745 * 23 21 11 46 46 H 1.09003 * 109.47302 * 291.61867 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0033 5 6 4.7899 1.5008 -0.0075 6 6 5.2749 1.7088 1.4286 7 6 5.9004 0.8456 -0.8311 8 6 3.6143 -0.7153 0.0038 9 6 2.3272 -1.1330 0.0060 10 6 1.8600 -2.5657 0.0141 11 7 1.2472 -2.8736 1.3132 12 6 0.4350 -4.0952 1.2358 13 6 -0.4907 -4.1589 2.4233 14 1 -0.5323 -3.3351 3.1204 15 6 -1.2845 -5.2690 2.6197 16 7 -1.2335 -6.2724 1.7711 17 14 -2.4314 -5.3484 4.0920 18 1 -2.3013 -4.1019 4.8886 19 1 -3.8325 -5.4903 3.6210 20 1 -2.0726 -6.5158 4.9367 21 6 2.2682 -2.9859 2.3635 22 6 3.4762 -3.7520 1.8205 23 6 2.7062 -1.5867 2.8006 24 1 -0.3633 0.0877 1.0239 25 1 -0.3633 0.8429 -0.5879 26 1 -0.3633 -0.9306 -0.4360 27 1 4.5319 2.4644 -0.4470 28 1 6.1540 2.3533 1.4254 29 1 5.5329 0.7452 1.8681 30 1 4.4838 2.1756 2.0153 31 1 5.5549 0.6974 -1.8541 32 1 6.7794 1.4902 -0.8338 33 1 6.1584 -0.1180 -0.3915 34 1 4.4891 -1.3484 0.0067 35 1 1.1257 -2.7129 -0.7780 36 1 2.7110 -3.2263 -0.1520 37 1 -0.1522 -4.0834 0.3176 38 1 1.0891 -4.9671 1.2378 39 1 -1.7917 -7.0536 1.9096 40 1 1.8531 -3.5203 3.2179 41 1 4.0100 -3.1280 1.1037 42 1 4.1422 -4.0109 2.6436 43 1 3.1370 -4.6630 1.3274 44 1 1.8271 -0.9911 3.0468 45 1 3.3493 -1.6645 3.6771 46 1 3.2541 -1.1074 1.9893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546688198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:00 Heat of formation + Delta-G solvation = 76.631521 kcal Electronic energy + Delta-G solvation = -23254.197319 eV Core-core repulsion = 20180.716336 eV Total energy + Delta-G solvation = -3073.480982 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.17276 -37.61592 -35.82721 -32.77956 -31.59801 -30.93784 -30.24097 -27.69095 -27.17731 -26.81898 -26.42709 -24.27143 -21.93961 -21.73847 -19.91487 -19.42590 -18.52293 -16.66704 -16.03804 -15.41925 -15.02000 -14.59999 -14.48841 -14.01943 -13.93690 -13.48449 -13.22842 -12.98878 -12.77924 -12.61283 -12.37113 -12.15996 -12.10164 -11.97929 -11.78999 -11.64520 -11.46618 -11.41345 -11.23013 -10.96830 -10.83423 -10.64827 -10.48589 -10.36010 -10.04447 -9.98140 -9.66032 -9.15481 -8.75593 -8.36577 -7.78066 -7.03647 -5.95346 -3.95643 2.18503 2.67188 3.19013 3.35044 3.42811 3.48393 4.36017 4.49643 4.66991 4.83194 4.94616 5.07914 5.19848 5.22508 5.34580 5.39563 5.41817 5.56616 5.64979 5.68763 5.76211 5.80227 5.86505 5.91698 6.00309 6.10880 6.18622 6.26701 6.30613 6.41737 6.45497 6.46715 6.50965 6.57886 6.63408 6.97950 6.99567 7.14707 7.33279 7.40945 7.49963 7.93438 8.12757 8.24274 8.37063 8.68711 9.14388 9.68579 11.14854 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.026720 B = 0.004497 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.643739 B = 6224.269803 C = 6462.640942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.099 3.901 3 N -0.310 5.310 4 N -0.375 5.375 5 C 0.160 3.840 6 C -0.165 4.165 7 C -0.164 4.164 8 C 0.047 3.953 9 C -0.197 4.197 10 C 0.121 3.879 11 N -0.521 5.521 12 C 0.191 3.809 13 C -0.498 4.498 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.287 1.287 21 C 0.087 3.913 22 C -0.176 4.176 23 C -0.144 4.144 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.161 0.839 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.025 0.975 38 H -0.004 1.004 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.033 0.967 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 12.797 -4.276 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 N -0.132 5.132 4 N -0.158 5.158 5 C 0.058 3.942 6 C -0.223 4.223 7 C -0.222 4.222 8 C -0.098 4.098 9 C -0.209 4.209 10 C -0.009 4.009 11 N -0.245 5.245 12 C 0.066 3.934 13 C -0.537 4.537 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.213 1.213 21 C -0.022 4.022 22 C -0.234 4.234 23 C -0.202 4.202 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.178 0.822 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.014 0.986 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.667 14.368 -4.188 20.268 hybrid contribution 0.035 -1.817 0.668 1.937 sum 13.702 12.551 -3.521 18.912 Atomic orbital electron populations 1.20091 0.86637 1.02484 1.03068 1.22179 0.96858 0.89934 0.97735 1.77235 0.86243 1.22931 1.26834 1.48499 1.04876 1.04117 1.58354 1.21091 0.82151 0.93916 0.97076 1.22244 1.01765 1.02794 0.95481 1.22180 0.97752 1.01830 1.00418 1.21993 0.98866 0.85102 1.03869 1.20004 0.91042 0.96750 1.13083 1.20400 0.97571 0.89433 0.93452 1.62247 1.20778 1.39129 1.02362 1.19758 0.91457 0.84586 0.97596 1.21220 1.21130 1.02100 1.09219 0.91880 1.24970 0.97413 0.95680 0.96589 1.69968 1.40510 1.07076 1.36525 0.86513 0.80681 0.77852 0.82803 1.19693 1.21133 1.21296 1.21480 0.89927 0.94703 0.96077 1.22419 0.99608 1.00735 1.00687 1.22105 1.00556 0.97722 0.99809 0.90316 0.92341 0.90069 0.88504 0.90950 0.91901 0.91615 0.91569 0.90341 0.91595 0.82215 0.91198 0.94602 0.95743 0.98625 0.93159 0.89774 0.93446 0.93528 0.92525 0.92788 0.94756 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.30 36.01 0.37 -0.64 16 2 C 0.10 1.67 7.22 -82.40 -0.59 1.08 16 3 N -0.31 -5.11 12.58 33.67 0.42 -4.69 16 4 N -0.38 -5.12 3.53 -54.86 -0.19 -5.32 16 5 C 0.16 1.56 3.93 -67.93 -0.27 1.30 16 6 C -0.16 -1.45 9.52 37.16 0.35 -1.10 16 7 C -0.16 -1.20 8.83 37.16 0.33 -0.87 16 8 C 0.05 0.66 7.48 -17.22 -0.13 0.53 16 9 C -0.20 -3.22 3.66 -105.05 -0.38 -3.60 16 10 C 0.12 2.17 4.59 -4.98 -0.02 2.15 16 11 N -0.52 -10.88 4.34 -229.52 -1.00 -11.88 16 12 C 0.19 4.83 4.64 -4.98 -0.02 4.81 16 13 C -0.50 -13.80 8.34 -34.44 -0.29 -14.08 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.09 1.69 2.74 -67.71 -0.19 1.50 16 22 C -0.18 -2.95 7.84 37.16 0.29 -2.66 16 23 C -0.14 -2.50 8.65 37.16 0.32 -2.18 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.48 7.16 -51.93 -0.37 0.11 16 34 H 0.16 1.88 6.53 -52.49 -0.34 1.54 16 35 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 36 H 0.04 0.62 5.50 -51.93 -0.29 0.33 16 37 H 0.02 0.66 7.70 -51.93 -0.40 0.26 16 38 H 0.00 -0.11 6.95 -51.93 -0.36 -0.47 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 1.86 7.14 -51.93 -0.37 1.49 16 41 H 0.05 0.70 5.35 -51.93 -0.28 0.42 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.05 6.85 -51.93 -0.36 0.69 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.99 3.78 -51.93 -0.20 0.79 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -30.65 355.64 -7.96 -38.61 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.95 Total: -0.59 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.33 Total: -12.35 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.03 Total: -47.73 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.65 -7.96 -38.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546688198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.243 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds