Wall clock time and date at job start Tue Mar 31 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30842 * 125.89638 * 2 1 4 4 N 1.40082 * 108.20441 * 180.14328 * 3 2 1 5 5 C 1.46495 * 126.03990 * 179.85019 * 4 3 2 6 6 C 1.53008 * 109.46881 * 94.69404 * 5 4 3 7 7 C 1.52997 * 109.47652 * 214.69636 * 5 4 3 8 8 C 1.34952 * 107.92686 * 359.59352 * 4 3 2 9 9 C 1.35321 * 107.74388 * 0.23915 * 8 4 3 10 10 C 1.50699 * 126.04131 * 180.02562 * 9 8 4 11 11 N 1.46896 * 109.47337 * 110.48475 * 10 9 8 12 12 C 1.46899 * 111.00048 * 163.12241 * 11 10 9 13 13 C 1.50702 * 109.46829 * 196.83093 * 12 11 10 14 14 H 1.08001 * 119.99934 * 4.75737 * 13 12 11 15 15 C 1.37876 * 119.99617 * 184.75580 * 13 12 11 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99729 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47295 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47218 * 120.00501 * 17 15 13 20 20 H 1.48497 * 109.47521 * 240.00198 * 17 15 13 21 21 C 1.46907 * 110.99939 * 287.07328 * 11 10 9 22 22 C 1.53003 * 109.46718 * 318.34437 * 21 11 10 23 23 C 1.52998 * 109.47122 * 78.34056 * 21 11 10 24 24 H 1.09000 * 109.46784 * 274.89570 * 1 2 3 25 25 H 1.08997 * 109.47186 * 34.89542 * 1 2 3 26 26 H 1.08997 * 109.46798 * 154.89718 * 1 2 3 27 27 H 1.09004 * 109.47146 * 334.70018 * 5 4 3 28 28 H 1.09004 * 109.46732 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46729 * 60.00358 * 6 5 4 30 30 H 1.08997 * 109.46999 * 300.00468 * 6 5 4 31 31 H 1.08994 * 109.47462 * 59.99800 * 7 5 4 32 32 H 1.09001 * 109.47444 * 180.02562 * 7 5 4 33 33 H 1.09005 * 109.46971 * 299.99860 * 7 5 4 34 34 H 1.07991 * 126.13126 * 180.21390 * 8 4 3 35 35 H 1.09006 * 109.46742 * 230.48615 * 10 9 8 36 36 H 1.09003 * 109.46717 * 350.47978 * 10 9 8 37 37 H 1.08999 * 109.46625 * 316.82638 * 12 11 10 38 38 H 1.08998 * 109.47366 * 76.83481 * 12 11 10 39 39 H 0.97004 * 119.99740 * 179.97438 * 16 15 13 40 40 H 1.08996 * 109.47067 * 198.34639 * 21 11 10 41 41 H 1.09000 * 109.47363 * 71.32351 * 22 21 11 42 42 H 1.09003 * 109.47016 * 191.32224 * 22 21 11 43 43 H 1.08995 * 109.47268 * 311.32093 * 22 21 11 44 44 H 1.08998 * 109.47255 * 51.61776 * 23 21 11 45 45 H 1.08994 * 109.47382 * 171.61745 * 23 21 11 46 46 H 1.09003 * 109.47302 * 291.61867 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0033 5 6 4.7899 1.5008 -0.0075 6 6 5.2749 1.7088 1.4286 7 6 5.9004 0.8456 -0.8311 8 6 3.6143 -0.7153 0.0038 9 6 2.3272 -1.1330 0.0060 10 6 1.8600 -2.5657 0.0141 11 7 1.2472 -2.8736 1.3132 12 6 0.4350 -4.0952 1.2358 13 6 -0.4907 -4.1589 2.4233 14 1 -0.5323 -3.3351 3.1204 15 6 -1.2845 -5.2690 2.6197 16 7 -1.2335 -6.2724 1.7711 17 14 -2.4314 -5.3484 4.0920 18 1 -2.3013 -4.1019 4.8886 19 1 -3.8325 -5.4903 3.6210 20 1 -2.0726 -6.5158 4.9367 21 6 2.2682 -2.9859 2.3635 22 6 3.4762 -3.7520 1.8205 23 6 2.7062 -1.5867 2.8006 24 1 -0.3633 0.0877 1.0239 25 1 -0.3633 0.8429 -0.5879 26 1 -0.3633 -0.9306 -0.4360 27 1 4.5319 2.4644 -0.4470 28 1 6.1540 2.3533 1.4254 29 1 5.5329 0.7452 1.8681 30 1 4.4838 2.1756 2.0153 31 1 5.5549 0.6974 -1.8541 32 1 6.7794 1.4902 -0.8338 33 1 6.1584 -0.1180 -0.3915 34 1 4.4891 -1.3484 0.0067 35 1 1.1257 -2.7129 -0.7780 36 1 2.7110 -3.2263 -0.1520 37 1 -0.1522 -4.0834 0.3176 38 1 1.0891 -4.9671 1.2378 39 1 -1.7917 -7.0536 1.9096 40 1 1.8531 -3.5203 3.2179 41 1 4.0100 -3.1280 1.1037 42 1 4.1422 -4.0109 2.6436 43 1 3.1370 -4.6630 1.3274 44 1 1.8271 -0.9911 3.0468 45 1 3.3493 -1.6645 3.6771 46 1 3.2541 -1.1074 1.9893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546688198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:59 Heat of formation + Delta-G solvation = 58.027231 kcal Electronic energy + Delta-G solvation = -23255.004061 eV Core-core repulsion = 20180.716336 eV Total energy + Delta-G solvation = -3074.287725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.35790 -39.17436 -36.73869 -34.88504 -32.85041 -32.27726 -31.80490 -28.87998 -28.29077 -28.05067 -27.91719 -25.82813 -23.82096 -22.86328 -21.02095 -20.72188 -19.93111 -18.35109 -17.57673 -16.94589 -16.30200 -16.19256 -15.77447 -15.35284 -15.08637 -14.88130 -14.48821 -14.16285 -14.08409 -14.01113 -13.77347 -13.40534 -13.22579 -13.06844 -13.00613 -12.98527 -12.82442 -12.75801 -12.60012 -12.37254 -12.24569 -12.18338 -12.09982 -11.93557 -11.65717 -11.39413 -11.35060 -11.16778 -10.54952 -9.93441 -9.02860 -8.74789 -8.12414 -6.21530 1.03015 1.41346 1.42693 1.55734 1.68145 1.89580 2.44727 3.18632 3.46613 3.63012 3.93045 3.97435 4.07203 4.15181 4.19834 4.31926 4.40729 4.45527 4.59203 4.66704 4.71527 4.76965 4.83098 4.84359 4.86021 4.88794 4.91030 4.95341 5.05308 5.09172 5.14792 5.20038 5.21655 5.25388 5.28898 5.31543 5.38928 5.52614 5.62915 5.76542 5.87636 6.19782 6.29868 6.56797 6.83030 6.93900 6.97493 7.47914 8.96787 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.026720 B = 0.004497 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.643739 B = 6224.269803 C = 6462.640942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.081 3.919 3 N -0.331 5.331 4 N -0.365 5.365 5 C 0.148 3.852 6 C -0.159 4.159 7 C -0.158 4.158 8 C 0.065 3.935 9 C -0.221 4.221 10 C 0.127 3.873 11 N -0.527 5.527 12 C 0.209 3.791 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.934 5.934 17 Si 0.961 3.039 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.280 1.280 21 C 0.084 3.916 22 C -0.166 4.166 23 C -0.129 4.129 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.191 0.809 35 H 0.055 0.945 36 H 0.047 0.953 37 H -0.001 1.001 38 H -0.030 1.030 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.030 0.970 45 H 0.054 0.946 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.303 14.075 -3.821 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.084 4.084 3 N -0.154 5.154 4 N -0.148 5.148 5 C 0.048 3.952 6 C -0.217 4.217 7 C -0.216 4.216 8 C -0.082 4.082 9 C -0.233 4.233 10 C -0.001 4.001 11 N -0.250 5.250 12 C 0.083 3.917 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.194 4.194 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.024 4.024 22 C -0.225 4.225 23 C -0.187 4.187 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.208 0.792 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.017 0.983 38 H -0.012 1.012 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.083 15.683 -3.735 22.772 hybrid contribution -0.611 -2.130 0.489 2.269 sum 15.472 13.553 -3.245 20.823 Atomic orbital electron populations 1.20002 0.86919 1.02479 1.02420 1.22267 0.97154 0.90432 0.98524 1.77181 0.87669 1.23085 1.27491 1.48900 1.04947 1.04562 1.56380 1.21547 0.81420 0.93790 0.98448 1.22216 1.02187 1.03194 0.94126 1.22182 0.97504 1.02516 0.99363 1.22307 0.98765 0.85552 1.01547 1.19812 0.92217 0.95380 1.15861 1.20299 0.97340 0.91099 0.91389 1.62180 1.22032 1.36417 1.04418 1.19366 0.91110 0.85627 0.95595 1.21459 1.21735 1.01952 1.09728 0.92700 1.25791 0.98935 0.95268 0.99374 1.70082 1.41478 1.07678 1.38286 0.85462 0.78567 0.78018 0.79336 1.19195 1.20490 1.20558 1.21479 0.90377 0.96079 0.94502 1.22303 0.98767 0.99717 1.01709 1.21964 0.99948 0.95737 1.01031 0.91546 0.90711 0.91370 0.88284 0.87920 0.91985 0.93721 0.92216 0.87597 0.90999 0.79213 0.92671 0.93488 0.98259 1.01201 0.92911 0.93243 0.90876 0.91554 0.94755 0.95115 0.92709 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.94 10.30 71.24 0.73 -1.21 16 2 C 0.08 2.73 7.22 43.10 0.31 3.04 16 3 N -0.33 -10.58 12.58 -47.38 -0.60 -11.18 16 4 N -0.37 -9.13 3.53 -327.49 -1.15 -10.28 16 5 C 0.15 2.43 3.93 44.99 0.18 2.61 16 6 C -0.16 -2.28 9.52 71.98 0.69 -1.59 16 7 C -0.16 -1.66 8.83 71.98 0.64 -1.02 16 8 C 0.07 1.66 7.48 83.54 0.63 2.28 16 9 C -0.22 -7.04 3.66 -20.14 -0.07 -7.12 16 10 C 0.13 4.64 4.59 85.56 0.39 5.04 16 11 N -0.53 -22.66 4.34 -880.05 -3.82 -26.48 16 12 C 0.21 11.12 4.64 85.56 0.40 11.52 16 13 C -0.51 -29.27 8.34 25.60 0.21 -29.06 16 14 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 15 C 0.00 0.22 5.46 84.66 0.46 0.68 16 16 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 17 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 C 0.08 3.27 2.74 44.91 0.12 3.39 16 22 C -0.17 -5.37 7.84 71.98 0.56 -4.80 16 23 C -0.13 -4.33 8.65 71.98 0.62 -3.70 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.07 2.35 7.70 -2.39 -0.02 2.33 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.70 7.16 -2.38 -0.02 0.68 16 34 H 0.19 3.61 6.53 -2.92 -0.02 3.59 16 35 H 0.05 2.14 7.53 -2.38 -0.02 2.12 16 36 H 0.05 1.59 5.50 -2.39 -0.01 1.58 16 37 H 0.00 -0.04 7.70 -2.39 -0.02 -0.06 16 38 H -0.03 -1.71 6.95 -2.39 -0.02 -1.72 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.05 2.24 7.14 -2.39 -0.02 2.23 16 41 H 0.07 1.95 5.35 -2.39 -0.01 1.94 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.03 1.25 6.85 -2.39 -0.02 1.24 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.07 2.26 3.78 -2.39 -0.01 2.25 16 Total: -1.00 -68.35 355.64 3.55 -64.80 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.94 Total: 12.05 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 5.87 Total: -19.94 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.29 Total: -104.17 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.35 3.55 -64.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546688198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.827 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds