Wall clock time and date at job start Tue Mar 31 2020 01:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55695 * 2 1 4 4 C 1.53003 * 117.50204 * 214.31426 * 2 1 3 5 5 C 1.52994 * 117.49993 * 145.68845 * 2 1 3 6 6 H 1.09000 * 117.51827 * 214.97067 * 5 2 1 7 7 C 1.52994 * 117.50120 * 0.02562 * 5 2 1 8 8 H 1.09002 * 115.55186 * 348.75862 * 7 5 2 9 9 C 1.53003 * 117.50331 * 203.05316 * 7 5 2 10 10 C 1.53003 * 60.00045 * 252.50574 * 9 7 5 11 11 H 1.08991 * 117.49794 * 252.50830 * 10 9 7 12 12 C 1.50698 * 117.51671 * 107.47476 * 10 9 7 13 13 O 1.21288 * 119.99922 * 19.76121 * 12 10 9 14 14 N 1.34775 * 119.99955 * 199.75117 * 12 10 9 15 15 C 1.46507 * 119.99966 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47019 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47085 * 299.99750 * 16 15 14 18 18 C 1.52999 * 109.47134 * 59.99950 * 16 15 14 19 19 C 1.53000 * 109.46792 * 180.02562 * 16 15 14 20 20 C 1.50704 * 109.46735 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00315 * 359.97438 * 20 19 16 22 22 C 1.37874 * 119.99902 * 180.02562 * 20 19 16 23 23 N 1.31510 * 120.00304 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99936 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46866 * 90.00611 * 24 22 20 26 26 H 1.48505 * 109.47433 * 210.00293 * 24 22 20 27 27 H 1.48499 * 109.47244 * 330.00342 * 24 22 20 28 28 H 1.08996 * 109.47193 * 274.30471 * 1 2 3 29 29 H 1.08997 * 109.47196 * 34.31364 * 1 2 3 30 30 H 1.09008 * 109.46747 * 154.30628 * 1 2 3 31 31 H 1.09002 * 117.49917 * 145.01845 * 4 2 1 32 32 H 1.08999 * 117.51429 * 359.97438 * 4 2 1 33 33 H 1.08998 * 117.49772 * 145.01510 * 9 7 5 34 34 H 1.09002 * 117.49143 * 359.97438 * 9 7 5 35 35 H 0.96999 * 120.00120 * 0.02562 * 14 12 10 36 36 H 1.08997 * 109.46979 * 300.00649 * 15 14 12 37 37 H 1.09002 * 109.46591 * 60.00373 * 15 14 12 38 38 H 1.09001 * 109.46804 * 60.00343 * 17 16 15 39 39 H 1.08993 * 109.47177 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47414 * 300.00785 * 17 16 15 41 41 H 1.09005 * 109.46858 * 60.00424 * 18 16 15 42 42 H 1.09003 * 109.46692 * 179.97438 * 18 16 15 43 43 H 1.09001 * 109.47391 * 300.00047 * 18 16 15 44 44 H 1.09001 * 109.47155 * 299.99401 * 19 16 15 45 45 H 1.09003 * 109.47387 * 60.00312 * 19 16 15 46 46 H 0.97001 * 120.00644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2364 -1.1209 0.7650 6 1 3.1716 -0.8755 1.2682 7 6 1.3589 -2.1564 1.4709 8 1 0.2991 -1.9098 1.5342 9 6 1.9764 -2.9267 2.6399 10 6 1.7322 -3.6308 1.3037 11 1 0.9181 -4.3539 1.2573 12 6 2.9359 -3.9518 0.4557 13 8 4.0387 -3.9930 0.9589 14 7 2.7870 -4.1933 -0.8619 15 6 3.9572 -4.5059 -1.6862 16 6 3.5153 -4.7348 -3.1330 17 6 2.5276 -5.9021 -3.1859 18 6 2.8392 -3.4700 -3.6659 19 6 4.7373 -5.0619 -3.9936 20 6 4.3020 -5.2880 -5.4186 21 1 3.2581 -5.2070 -5.6837 22 6 5.2362 -5.5994 -6.3836 23 7 4.8565 -5.7962 -7.6272 24 14 7.0415 -5.7402 -5.9249 25 1 7.3449 -7.1402 -5.5332 26 1 7.8796 -5.3596 -7.0903 27 1 7.3353 -4.8330 -4.7866 28 1 -0.3633 0.0771 1.0247 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4456 31 1 3.1716 -0.8750 -1.2683 32 1 1.6116 -1.8588 -1.2681 33 1 1.3228 -3.1866 3.4726 34 1 3.0080 -2.6958 2.9057 35 1 1.9051 -4.1601 -1.2644 36 1 4.6606 -3.6741 -1.6487 37 1 4.4390 -5.4067 -1.3061 38 1 1.6570 -5.6695 -2.5727 39 1 2.2125 -6.0650 -4.2165 40 1 3.0093 -6.8032 -2.8061 41 1 3.5429 -2.6384 -3.6282 42 1 2.5248 -3.6331 -4.6968 43 1 1.9686 -3.2374 -3.0527 44 1 5.4412 -4.2305 -3.9560 45 1 5.2186 -5.9631 -3.6138 46 1 5.5137 -6.0149 -8.3062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868360091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:31 Heat of formation + Delta-G solvation = -11.713618 kcal Electronic energy + Delta-G solvation = -22735.183420 eV Core-core repulsion = 19625.578754 eV Total energy + Delta-G solvation = -3109.604666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.24336 -38.32888 -37.19367 -35.35342 -33.56770 -32.06405 -28.68971 -27.90478 -26.78908 -26.56414 -24.42542 -23.50860 -22.05950 -21.39621 -20.23920 -19.32319 -17.97823 -16.96284 -16.70785 -16.23394 -15.55812 -15.23680 -14.66798 -14.24325 -13.89084 -13.66422 -13.53481 -13.33728 -13.16260 -12.72726 -12.70613 -12.30971 -12.23779 -12.16613 -11.57612 -11.38021 -11.23722 -11.12490 -11.00710 -10.99617 -10.77635 -10.61525 -10.47591 -9.97866 -9.92801 -9.86609 -9.74566 -9.64227 -9.37252 -8.99141 -8.72715 -8.53621 -6.04415 -4.01602 2.69761 3.29791 3.31451 3.39477 3.43634 3.50779 3.81973 4.38256 4.45596 4.55803 4.62005 4.80734 4.90691 5.06282 5.13754 5.17799 5.24497 5.28416 5.41100 5.54142 5.57869 5.59910 5.62770 5.64568 5.76228 5.83824 5.88436 6.00453 6.09293 6.11611 6.12876 6.18586 6.20983 6.33072 6.51244 6.59814 6.73167 6.91917 7.01733 7.05360 7.20599 7.37004 7.72775 7.81385 8.45247 8.53056 8.99653 9.58477 11.08325 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.004154 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.699768 B = 6738.104493 C = 7186.287922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.151 4.151 3 H 0.102 0.898 4 C -0.162 4.162 5 C -0.129 4.129 6 H 0.105 0.895 7 C -0.099 4.099 8 H 0.115 0.885 9 C -0.142 4.142 10 C -0.187 4.187 11 H 0.124 0.876 12 C 0.545 3.455 13 O -0.547 6.547 14 N -0.714 5.714 15 C 0.127 3.873 16 C -0.062 4.062 17 C -0.129 4.129 18 C -0.127 4.127 19 C -0.002 4.002 20 C -0.510 4.510 21 H 0.078 0.922 22 C 0.067 3.933 23 N -0.904 5.904 24 Si 0.874 3.126 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.265 1.265 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.013 0.987 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 8.684 17.393 21.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.169 4.169 3 H 0.120 0.880 4 C -0.199 4.199 5 C -0.147 4.147 6 H 0.123 0.877 7 C -0.117 4.117 8 H 0.133 0.867 9 C -0.180 4.180 10 C -0.208 4.208 11 H 0.142 0.858 12 C 0.330 3.670 13 O -0.425 6.425 14 N -0.365 5.365 15 C 0.004 3.996 16 C -0.062 4.062 17 C -0.186 4.186 18 C -0.184 4.184 19 C -0.040 4.040 20 C -0.548 4.548 21 H 0.096 0.904 22 C -0.134 4.134 23 N -0.543 5.543 24 Si 0.702 3.298 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.190 1.190 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.031 0.969 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.351 8.600 17.550 21.665 hybrid contribution 0.670 -0.250 -0.167 0.734 sum -8.681 8.350 17.383 21.148 Atomic orbital electron populations 1.21349 0.92981 1.02046 1.01521 1.22362 0.95310 0.94361 1.04850 0.88019 1.23151 1.02637 1.00830 0.93237 1.21823 0.99980 0.98727 0.94169 0.87711 1.21820 0.99533 0.89294 1.01071 0.86720 1.23014 1.02981 1.01392 0.90592 1.22351 0.99919 0.97327 1.01216 0.85840 1.19467 0.89111 0.76183 0.82212 1.90674 1.26821 1.52100 1.72920 1.46081 1.11614 1.70781 1.08053 1.21605 0.87043 1.00395 0.90525 1.20676 0.98178 0.95741 0.91653 1.21777 0.97029 0.97385 1.02419 1.21773 0.98401 0.96503 1.01727 1.19589 0.92553 0.96160 0.95668 1.21079 0.96045 1.47179 0.90527 0.90407 1.24989 0.98632 0.94851 0.94909 1.69897 1.34328 1.48762 1.01327 0.86871 0.85888 0.78871 0.78207 1.20381 1.21509 1.19013 0.92308 0.92224 0.92362 0.88748 0.88451 0.88086 0.87636 0.76638 0.91974 0.92043 0.95045 0.90914 0.93450 0.93431 0.90988 0.94978 0.96417 0.96882 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.75 37.16 0.33 -0.60 16 2 C -0.15 -1.38 6.41 -90.62 -0.58 -1.96 16 3 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.16 -1.76 8.71 -26.73 -0.23 -1.99 16 5 C -0.13 -1.33 5.11 -90.62 -0.46 -1.80 16 6 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 7 C -0.10 -0.91 5.51 -90.62 -0.50 -1.41 16 8 H 0.11 0.86 6.62 -51.93 -0.34 0.52 16 9 C -0.14 -1.37 9.76 -26.73 -0.26 -1.64 16 10 C -0.19 -1.98 6.18 -91.77 -0.57 -2.55 16 11 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 12 C 0.54 7.82 5.99 -10.99 -0.07 7.76 16 13 O -0.55 -10.08 16.45 5.55 0.09 -9.99 16 14 N -0.71 -9.79 4.18 -60.29 -0.25 -10.04 16 15 C 0.13 2.12 4.56 -4.04 -0.02 2.10 16 16 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 17 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 18 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 19 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 20 C -0.51 -13.59 8.20 -34.44 -0.28 -13.87 16 21 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 22 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 23 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 24 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.27 -6.34 6.54 56.52 0.37 -5.98 16 28 H 0.06 0.40 7.74 -51.93 -0.40 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 7.86 -51.92 -0.41 0.04 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.10 1.06 7.02 -51.93 -0.36 0.69 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.11 1.20 7.81 -51.93 -0.41 0.79 16 35 H 0.40 4.71 5.91 -40.82 -0.24 4.46 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 39 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 43 H 0.03 0.44 6.42 -51.93 -0.33 0.10 16 44 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 45 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -30.70 357.13 -9.00 -39.71 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.01 Total: 3.70 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -2.32 Total: -19.23 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.52 Total: -36.42 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.70 -9.00 -39.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868360091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.994 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds