Wall clock time and date at job start Tue Mar 31 2020 01:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55695 * 2 1 4 4 C 1.53003 * 117.50204 * 214.31426 * 2 1 3 5 5 C 1.52994 * 117.49993 * 145.68845 * 2 1 3 6 6 H 1.09000 * 117.51827 * 214.97067 * 5 2 1 7 7 C 1.52994 * 117.50120 * 0.02562 * 5 2 1 8 8 H 1.09002 * 115.55186 * 348.75862 * 7 5 2 9 9 C 1.53003 * 117.50331 * 203.05316 * 7 5 2 10 10 C 1.53003 * 60.00045 * 252.50574 * 9 7 5 11 11 H 1.08991 * 117.49794 * 252.50830 * 10 9 7 12 12 C 1.50698 * 117.51671 * 107.47476 * 10 9 7 13 13 O 1.21288 * 119.99922 * 19.76121 * 12 10 9 14 14 N 1.34775 * 119.99955 * 199.75117 * 12 10 9 15 15 C 1.46507 * 119.99966 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47019 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47085 * 299.99750 * 16 15 14 18 18 C 1.52999 * 109.47134 * 59.99950 * 16 15 14 19 19 C 1.53000 * 109.46792 * 180.02562 * 16 15 14 20 20 C 1.50704 * 109.46735 * 179.97438 * 19 16 15 21 21 H 1.08003 * 120.00315 * 359.97438 * 20 19 16 22 22 C 1.37874 * 119.99902 * 180.02562 * 20 19 16 23 23 N 1.31510 * 120.00304 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99936 * 359.97438 * 22 20 19 25 25 H 1.48505 * 109.46866 * 90.00611 * 24 22 20 26 26 H 1.48505 * 109.47433 * 210.00293 * 24 22 20 27 27 H 1.48499 * 109.47244 * 330.00342 * 24 22 20 28 28 H 1.08996 * 109.47193 * 274.30471 * 1 2 3 29 29 H 1.08997 * 109.47196 * 34.31364 * 1 2 3 30 30 H 1.09008 * 109.46747 * 154.30628 * 1 2 3 31 31 H 1.09002 * 117.49917 * 145.01845 * 4 2 1 32 32 H 1.08999 * 117.51429 * 359.97438 * 4 2 1 33 33 H 1.08998 * 117.49772 * 145.01510 * 9 7 5 34 34 H 1.09002 * 117.49143 * 359.97438 * 9 7 5 35 35 H 0.96999 * 120.00120 * 0.02562 * 14 12 10 36 36 H 1.08997 * 109.46979 * 300.00649 * 15 14 12 37 37 H 1.09002 * 109.46591 * 60.00373 * 15 14 12 38 38 H 1.09001 * 109.46804 * 60.00343 * 17 16 15 39 39 H 1.08993 * 109.47177 * 179.97438 * 17 16 15 40 40 H 1.09002 * 109.47414 * 300.00785 * 17 16 15 41 41 H 1.09005 * 109.46858 * 60.00424 * 18 16 15 42 42 H 1.09003 * 109.46692 * 179.97438 * 18 16 15 43 43 H 1.09001 * 109.47391 * 300.00047 * 18 16 15 44 44 H 1.09001 * 109.47155 * 299.99401 * 19 16 15 45 45 H 1.09003 * 109.47387 * 60.00312 * 19 16 15 46 46 H 0.97001 * 120.00644 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2364 -1.1209 0.7650 6 1 3.1716 -0.8755 1.2682 7 6 1.3589 -2.1564 1.4709 8 1 0.2991 -1.9098 1.5342 9 6 1.9764 -2.9267 2.6399 10 6 1.7322 -3.6308 1.3037 11 1 0.9181 -4.3539 1.2573 12 6 2.9359 -3.9518 0.4557 13 8 4.0387 -3.9930 0.9589 14 7 2.7870 -4.1933 -0.8619 15 6 3.9572 -4.5059 -1.6862 16 6 3.5153 -4.7348 -3.1330 17 6 2.5276 -5.9021 -3.1859 18 6 2.8392 -3.4700 -3.6659 19 6 4.7373 -5.0619 -3.9936 20 6 4.3020 -5.2880 -5.4186 21 1 3.2581 -5.2070 -5.6837 22 6 5.2362 -5.5994 -6.3836 23 7 4.8565 -5.7962 -7.6272 24 14 7.0415 -5.7402 -5.9249 25 1 7.3449 -7.1402 -5.5332 26 1 7.8796 -5.3596 -7.0903 27 1 7.3353 -4.8330 -4.7866 28 1 -0.3633 0.0771 1.0247 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9261 -0.4456 31 1 3.1716 -0.8750 -1.2683 32 1 1.6116 -1.8588 -1.2681 33 1 1.3228 -3.1866 3.4726 34 1 3.0080 -2.6958 2.9057 35 1 1.9051 -4.1601 -1.2644 36 1 4.6606 -3.6741 -1.6487 37 1 4.4390 -5.4067 -1.3061 38 1 1.6570 -5.6695 -2.5727 39 1 2.2125 -6.0650 -4.2165 40 1 3.0093 -6.8032 -2.8061 41 1 3.5429 -2.6384 -3.6282 42 1 2.5248 -3.6331 -4.6968 43 1 1.9686 -3.2374 -3.0527 44 1 5.4412 -4.2305 -3.9560 45 1 5.2186 -5.9631 -3.6138 46 1 5.5137 -6.0149 -8.3062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868360091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:30 Heat of formation + Delta-G solvation = -28.684691 kcal Electronic energy + Delta-G solvation = -22735.919341 eV Core-core repulsion = 19625.578754 eV Total energy + Delta-G solvation = -3110.340587 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29131 -39.38951 -38.51997 -36.20758 -35.16267 -33.93321 -29.79386 -29.31196 -28.09408 -27.98899 -25.53994 -24.61619 -23.56164 -22.23360 -21.20679 -20.34148 -19.41069 -18.90286 -17.78773 -17.08106 -16.84325 -16.27721 -16.10467 -15.84200 -15.27536 -15.04392 -14.80534 -14.45194 -14.19941 -14.15724 -13.80231 -13.76962 -13.33573 -13.04721 -12.93186 -12.84823 -12.61096 -12.39246 -12.25219 -12.16627 -12.06464 -11.81270 -11.78625 -11.54701 -11.48015 -11.24082 -10.94085 -10.83014 -10.71258 -10.62618 -10.41172 -9.97925 -8.23171 -6.22991 1.34123 1.37155 1.46899 1.63507 2.24078 2.37887 2.63679 3.05305 3.12320 3.60120 3.77203 3.84582 3.91512 4.00885 4.05798 4.12268 4.16748 4.28622 4.39317 4.49038 4.52284 4.63856 4.70883 4.78478 4.91616 4.92528 4.97188 4.99238 5.02201 5.03767 5.08290 5.09762 5.23929 5.25076 5.29642 5.35350 5.37962 5.40343 5.49289 5.51204 5.57516 5.69662 5.76265 6.37410 6.65321 6.83764 7.34246 7.39846 8.92377 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.004154 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.699768 B = 6738.104493 C = 7186.287922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.135 4.135 3 H 0.102 0.898 4 C -0.177 4.177 5 C -0.138 4.138 6 H 0.085 0.915 7 C -0.083 4.083 8 H 0.143 0.857 9 C -0.143 4.143 10 C -0.193 4.193 11 H 0.154 0.846 12 C 0.543 3.457 13 O -0.593 6.593 14 N -0.703 5.703 15 C 0.141 3.859 16 C -0.056 4.056 17 C -0.124 4.124 18 C -0.119 4.119 19 C -0.003 4.003 20 C -0.501 4.501 21 H 0.054 0.946 22 C 0.008 3.992 23 N -0.950 5.950 24 Si 0.931 3.069 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.254 1.254 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 9.260 19.685 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.153 4.153 3 H 0.120 0.880 4 C -0.214 4.214 5 C -0.156 4.156 6 H 0.103 0.897 7 C -0.101 4.101 8 H 0.161 0.839 9 C -0.180 4.180 10 C -0.214 4.214 11 H 0.172 0.828 12 C 0.331 3.669 13 O -0.474 6.474 14 N -0.354 5.354 15 C 0.017 3.983 16 C -0.057 4.057 17 C -0.181 4.181 18 C -0.177 4.177 19 C -0.041 4.041 20 C -0.539 4.539 21 H 0.072 0.928 22 C -0.188 4.188 23 N -0.592 5.592 24 Si 0.757 3.243 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.178 1.178 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.030 0.970 45 H 0.029 0.971 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.192 9.184 19.851 24.569 hybrid contribution 1.208 -0.386 -0.871 1.538 sum -9.984 8.797 18.980 23.180 Atomic orbital electron populations 1.21388 0.91207 1.02593 1.02639 1.22452 0.96544 0.93741 1.02575 0.87954 1.23110 1.02346 1.02393 0.93523 1.21830 0.99961 1.00115 0.93718 0.89726 1.21914 1.00521 0.87721 0.99952 0.83897 1.23096 1.02417 1.01189 0.91326 1.22399 0.98923 0.99009 1.01039 0.82835 1.20156 0.89757 0.74831 0.82195 1.90659 1.29057 1.53991 1.73707 1.45898 1.11196 1.70439 1.07901 1.21211 0.87874 0.99423 0.89792 1.20532 0.96577 0.96756 0.91788 1.21705 0.98091 0.96806 1.01500 1.21679 0.99590 0.95661 1.00741 1.19565 0.94553 0.95755 0.94252 1.21359 0.94948 1.45189 0.92399 0.92824 1.25790 1.02950 0.95217 0.94885 1.70030 1.35695 1.50934 1.02494 0.85938 0.80973 0.79236 0.78164 1.19721 1.21386 1.17843 0.90864 0.91645 0.91911 0.90783 0.88053 0.85156 0.90088 0.75151 0.93276 0.93138 0.91225 0.93537 0.93785 0.93894 0.93645 0.91269 0.96972 0.97089 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.75 71.98 0.63 -0.77 16 2 C -0.13 -2.18 6.41 -10.79 -0.07 -2.25 16 3 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 4 C -0.18 -3.61 8.71 30.60 0.27 -3.34 16 5 C -0.14 -2.63 5.11 -10.80 -0.06 -2.69 16 6 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.08 -1.24 5.51 -10.79 -0.06 -1.30 16 8 H 0.14 1.41 6.62 -2.39 -0.02 1.40 16 9 C -0.14 -2.37 9.76 30.60 0.30 -2.07 16 10 C -0.19 -3.46 6.18 -11.54 -0.07 -3.53 16 11 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 12 C 0.54 14.70 5.99 87.66 0.53 15.22 16 13 O -0.59 -21.70 16.45 -3.05 -0.05 -21.75 16 14 N -0.70 -17.85 4.18 -463.05 -1.94 -19.79 16 15 C 0.14 4.58 4.56 86.38 0.39 4.97 16 16 C -0.06 -1.98 0.54 -52.18 -0.03 -2.01 16 17 C -0.12 -4.09 8.05 71.98 0.58 -3.51 16 18 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 19 C 0.00 -0.15 3.11 29.85 0.09 -0.06 16 20 C -0.50 -27.21 8.20 25.60 0.21 -27.00 16 21 H 0.05 3.12 5.92 -2.91 -0.02 3.11 16 22 C 0.01 0.46 5.47 84.65 0.46 0.92 16 23 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 24 Si 0.93 44.75 27.47 68.60 1.88 46.64 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 27 H -0.25 -11.65 6.54 99.48 0.65 -10.99 16 28 H 0.07 0.67 7.74 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.69 7.86 -2.38 -0.02 0.68 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.94 7.02 -2.39 -0.02 1.93 16 33 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.78 7.81 -2.39 -0.02 1.76 16 35 H 0.41 8.33 5.91 -92.71 -0.55 7.79 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.74 6.86 -2.39 -0.02 1.72 16 39 H 0.05 1.78 6.62 -2.39 -0.02 1.77 16 40 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 43 H 0.07 1.73 6.42 -2.39 -0.02 1.71 16 44 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 45 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 46 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -68.86 357.13 4.30 -64.56 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.35 Total: 19.36 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 3.76 Total: -30.77 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.64 Total: -78.04 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -68.86 4.30 -64.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868360091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.878 kcal (2) G-P(sol) polarization free energy of solvation -68.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds