Wall clock time and date at job start Tue Mar 31 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47122 * 2 1 4 4 C 1.46506 * 119.99695 * 92.87681 * 3 2 1 5 5 C 1.50701 * 109.46748 * 81.73445 * 4 3 2 6 6 H 1.08002 * 120.00305 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00211 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00280 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99489 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47432 * 90.00303 * 9 7 5 11 11 H 1.48502 * 109.46809 * 210.00209 * 9 7 5 12 12 H 1.48502 * 109.47172 * 329.99731 * 9 7 5 13 13 C 1.34771 * 120.00033 * 272.88306 * 3 2 1 14 14 O 1.21280 * 120.00003 * 4.48816 * 13 3 2 15 15 C 1.50703 * 119.99799 * 184.49021 * 13 3 2 16 16 C 1.52997 * 109.64363 * 50.84717 * 15 13 3 17 17 C 1.53393 * 109.64008 * 171.27089 * 15 13 3 18 18 C 1.53028 * 108.44324 * 52.24595 * 17 15 13 19 19 C 1.50069 * 110.14175 * 49.43710 * 18 17 15 20 20 C 1.50707 * 117.95616 * 162.89501 * 19 18 17 21 21 C 1.29437 * 124.07841 * 342.87058 * 19 18 17 22 22 C 1.50702 * 117.96218 * 180.49581 * 21 19 18 23 23 C 1.50062 * 124.07569 * 0.46636 * 21 19 18 24 24 H 1.08996 * 109.47322 * 55.31278 * 1 2 3 25 25 H 1.08997 * 109.47143 * 175.31488 * 1 2 3 26 26 H 1.09001 * 109.47341 * 295.31173 * 1 2 3 27 27 H 1.08994 * 109.47329 * 240.00041 * 2 1 3 28 28 H 1.09002 * 109.47447 * 119.99603 * 2 1 3 29 29 H 1.08992 * 109.47602 * 321.73395 * 4 3 2 30 30 H 1.08999 * 109.47005 * 201.72874 * 4 3 2 31 31 H 0.97000 * 119.99871 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46908 * 42.00403 * 16 15 13 33 33 H 1.08994 * 109.47088 * 162.00406 * 16 15 13 34 34 H 1.08994 * 109.46840 * 282.01025 * 16 15 13 35 35 H 1.08998 * 109.64593 * 171.93250 * 17 15 13 36 36 H 1.09005 * 109.64324 * 292.56247 * 17 15 13 37 37 H 1.08996 * 109.35654 * 169.64224 * 18 17 15 38 38 H 1.08998 * 109.35568 * 289.37215 * 18 17 15 39 39 H 1.08999 * 109.46982 * 355.45098 * 20 19 18 40 40 H 1.09003 * 109.47028 * 115.45257 * 20 19 18 41 41 H 1.09001 * 109.46693 * 235.44610 * 20 19 18 42 42 H 1.09003 * 109.47322 * 359.75705 * 22 21 19 43 43 H 1.09003 * 109.47246 * 119.75738 * 22 21 19 44 44 H 1.09005 * 109.47032 * 239.75797 * 22 21 19 45 45 H 1.09007 * 109.36080 * 222.66233 * 23 21 19 46 46 H 1.09003 * 109.35656 * 103.07985 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3225 2.0506 1.2672 5 6 3.6966 1.6435 1.7331 6 1 4.2844 0.9547 1.1444 7 6 4.2036 2.1503 2.9109 8 7 5.4026 1.7946 3.3177 9 14 3.1873 3.3421 3.9287 10 1 2.3607 2.5828 4.9010 11 1 4.0922 4.2636 4.6617 12 1 2.3011 4.1276 3.0326 13 6 2.1876 2.0362 -1.1657 14 8 1.8592 1.5120 -2.2089 15 6 2.7849 3.4197 -1.1727 16 6 4.0865 3.4221 -0.3687 17 6 3.0700 3.8508 -2.6170 18 6 1.7931 3.6633 -3.4393 19 6 0.6269 4.2902 -2.7329 20 6 -0.6207 4.5623 -3.5333 21 6 0.6257 4.6114 -1.4790 22 6 -0.6270 5.2242 -0.9077 23 6 1.7939 4.4109 -0.5587 24 1 -0.3634 0.5848 -0.8450 25 1 -0.3633 -1.0242 -0.0839 26 1 -0.3634 0.4394 0.9290 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5849 1.7630 2.0163 30 1 2.2927 3.1307 1.1239 31 1 5.7590 2.1508 4.1465 32 1 4.6585 2.5236 -0.6007 33 1 4.6728 4.3033 -0.6291 34 1 3.8556 3.4409 0.6963 35 1 3.3664 4.8996 -2.6346 36 1 3.8673 3.2346 -3.0327 37 1 1.9195 4.1326 -4.4148 38 1 1.6024 2.5984 -3.5725 39 1 -0.4420 4.3156 -4.5799 40 1 -1.4384 3.9515 -3.1505 41 1 -0.8842 5.6166 -3.4483 42 1 -1.3800 5.3090 -1.6913 43 1 -1.0073 4.5921 -0.1053 44 1 -0.3997 6.2147 -0.5134 45 1 1.4392 4.0225 0.3961 46 1 2.2928 5.3661 -0.3949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:16 Heat of formation + Delta-G solvation = -14.228880 kcal Electronic energy + Delta-G solvation = -24356.754802 eV Core-core repulsion = 21247.041066 eV Total energy + Delta-G solvation = -3109.713736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57842 -37.64501 -35.52692 -34.31009 -32.65762 -31.63364 -30.32493 -28.27917 -27.78722 -26.66541 -24.18092 -23.42902 -22.91649 -22.15945 -20.66421 -18.03935 -17.22436 -16.85854 -15.87144 -14.99491 -14.82119 -14.63825 -14.42969 -14.17942 -13.69381 -13.47399 -13.38613 -13.04249 -12.65484 -12.55552 -12.39799 -12.12635 -11.92937 -11.72856 -11.66089 -11.50322 -11.47891 -11.39466 -11.34165 -11.09318 -10.83844 -10.69806 -10.55033 -10.40564 -10.18821 -9.72967 -9.61884 -9.39258 -8.73540 -8.53930 -8.01874 -7.67414 -6.22947 -4.19942 2.55795 3.14928 3.22014 3.25163 3.43501 3.91251 4.23935 4.97087 4.99998 5.06015 5.12446 5.36806 5.51712 5.57889 5.63740 5.67507 5.71493 5.76945 5.79195 5.82244 5.87490 5.93867 5.98457 6.06394 6.10791 6.18767 6.23410 6.25815 6.31000 6.34815 6.41019 6.48008 6.55012 6.61286 6.67091 6.72695 6.78121 6.95659 7.06225 7.34036 7.40764 7.48686 7.51612 8.18100 8.46658 8.82254 9.04412 9.35574 10.89488 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.007132 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.623947 B = 3925.253371 C = 4206.119152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.587 5.587 4 C 0.188 3.812 5 C -0.529 4.529 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.889 5.889 9 Si 0.863 3.137 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.534 3.466 14 O -0.562 6.562 15 C -0.073 4.073 16 C -0.152 4.152 17 C -0.090 4.090 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.077 4.077 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.125 0.875 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 5.445 -7.838 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.007 4.007 3 N -0.316 5.316 4 C 0.067 3.933 5 C -0.567 4.567 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.187 1.187 13 C 0.323 3.677 14 O -0.443 6.443 15 C -0.076 4.076 16 C -0.208 4.208 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.171 4.171 21 C -0.146 4.146 22 C -0.181 4.181 23 C -0.114 4.114 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.443 5.189 -8.191 13.535 hybrid contribution -0.343 0.632 0.910 1.160 sum -9.786 5.821 -7.281 13.515 Atomic orbital electron populations 1.22101 0.97083 1.01184 1.01704 1.21225 0.93159 0.83683 1.02588 1.47861 1.63387 1.13225 1.07123 1.20369 0.96918 0.94624 0.81364 1.21322 0.99374 1.28775 1.07229 0.90206 1.24838 0.94796 0.96253 0.96937 1.69878 1.16232 1.43874 1.22687 0.87062 0.80756 0.81890 0.81396 1.19947 1.20791 1.18700 1.20299 0.77051 0.87408 0.82946 1.90353 1.53204 1.69348 1.31437 1.20750 0.97208 0.92356 0.97266 1.22467 0.93760 1.00981 1.03641 1.21443 0.97718 1.00241 0.93346 1.21001 0.91975 1.04561 0.96607 1.20691 0.96577 0.99497 0.94479 1.20906 0.96125 1.00748 0.99319 1.20575 0.96526 1.02829 0.94690 1.21031 0.95864 1.00098 1.01074 1.20665 0.93571 0.98894 0.98277 0.92643 0.92522 0.93026 0.91303 0.90202 0.95992 0.92572 0.92375 0.92098 0.93970 0.87142 0.92123 0.91761 0.92885 0.85811 0.92649 0.92157 0.92153 0.91628 0.92237 0.92310 0.89570 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.22 37.15 0.38 -2.20 16 2 C 0.12 2.16 6.07 -4.04 -0.02 2.13 16 3 N -0.59 -11.98 2.46 -175.06 -0.43 -12.41 16 4 C 0.19 4.06 3.31 -5.19 -0.02 4.05 16 5 C -0.53 -13.27 6.87 -34.44 -0.24 -13.50 16 6 H 0.08 2.26 8.03 -52.49 -0.42 1.84 16 7 C 0.08 1.95 5.24 -17.82 -0.09 1.86 16 8 N -0.89 -25.04 13.96 55.43 0.77 -24.27 16 9 Si 0.86 19.24 27.47 -169.99 -4.67 14.57 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 13 C 0.53 10.81 5.74 -10.99 -0.06 10.74 16 14 O -0.56 -11.97 12.53 5.56 0.07 -11.90 16 15 C -0.07 -1.33 0.51 -155.44 -0.08 -1.40 16 16 C -0.15 -2.97 7.03 37.16 0.26 -2.71 16 17 C -0.09 -1.48 4.67 -26.51 -0.12 -1.60 16 18 C -0.11 -1.68 5.05 -28.17 -0.14 -1.83 16 19 C -0.11 -1.72 5.62 -100.93 -0.57 -2.29 16 20 C -0.11 -1.43 8.35 36.01 0.30 -1.13 16 21 C -0.15 -2.28 5.56 -100.94 -0.56 -2.84 16 22 C -0.12 -1.63 9.67 36.01 0.35 -1.28 16 23 C -0.08 -1.31 4.18 -28.18 -0.12 -1.42 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 28 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 29 H 0.02 0.47 7.56 -51.93 -0.39 0.08 16 30 H 0.06 1.19 1.80 -51.93 -0.09 1.09 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.30 7.75 -51.93 -0.40 0.90 16 33 H 0.04 0.73 8.01 -51.93 -0.42 0.31 16 34 H 0.11 2.38 3.70 -51.93 -0.19 2.19 16 35 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.12 2.28 5.08 -52.43 -0.27 2.01 16 39 H 0.05 0.64 7.93 -51.93 -0.41 0.23 16 40 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 41 H 0.06 0.67 7.27 -51.93 -0.38 0.29 16 42 H 0.06 0.76 5.17 -51.93 -0.27 0.49 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.55 5.22 -51.93 -0.27 1.28 16 46 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -27.59 337.67 -7.60 -35.19 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.70 Total: 7.13 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.74 Total: -13.41 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.34 Total: -36.68 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.07 Total: -11.90 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.67 Total: 14.57 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.59 -7.60 -35.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.964 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds