Wall clock time and date at job start Tue Mar 31 2020 01:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47122 * 2 1 4 4 C 1.46506 * 119.99695 * 92.87681 * 3 2 1 5 5 C 1.50701 * 109.46748 * 81.73445 * 4 3 2 6 6 H 1.08002 * 120.00305 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00211 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00280 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99489 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47432 * 90.00303 * 9 7 5 11 11 H 1.48502 * 109.46809 * 210.00209 * 9 7 5 12 12 H 1.48502 * 109.47172 * 329.99731 * 9 7 5 13 13 C 1.34771 * 120.00033 * 272.88306 * 3 2 1 14 14 O 1.21280 * 120.00003 * 4.48816 * 13 3 2 15 15 C 1.50703 * 119.99799 * 184.49021 * 13 3 2 16 16 C 1.52997 * 109.64363 * 50.84717 * 15 13 3 17 17 C 1.53393 * 109.64008 * 171.27089 * 15 13 3 18 18 C 1.53028 * 108.44324 * 52.24595 * 17 15 13 19 19 C 1.50069 * 110.14175 * 49.43710 * 18 17 15 20 20 C 1.50707 * 117.95616 * 162.89501 * 19 18 17 21 21 C 1.29437 * 124.07841 * 342.87058 * 19 18 17 22 22 C 1.50702 * 117.96218 * 180.49581 * 21 19 18 23 23 C 1.50062 * 124.07569 * 0.46636 * 21 19 18 24 24 H 1.08996 * 109.47322 * 55.31278 * 1 2 3 25 25 H 1.08997 * 109.47143 * 175.31488 * 1 2 3 26 26 H 1.09001 * 109.47341 * 295.31173 * 1 2 3 27 27 H 1.08994 * 109.47329 * 240.00041 * 2 1 3 28 28 H 1.09002 * 109.47447 * 119.99603 * 2 1 3 29 29 H 1.08992 * 109.47602 * 321.73395 * 4 3 2 30 30 H 1.08999 * 109.47005 * 201.72874 * 4 3 2 31 31 H 0.97000 * 119.99871 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.46908 * 42.00403 * 16 15 13 33 33 H 1.08994 * 109.47088 * 162.00406 * 16 15 13 34 34 H 1.08994 * 109.46840 * 282.01025 * 16 15 13 35 35 H 1.08998 * 109.64593 * 171.93250 * 17 15 13 36 36 H 1.09005 * 109.64324 * 292.56247 * 17 15 13 37 37 H 1.08996 * 109.35654 * 169.64224 * 18 17 15 38 38 H 1.08998 * 109.35568 * 289.37215 * 18 17 15 39 39 H 1.08999 * 109.46982 * 355.45098 * 20 19 18 40 40 H 1.09003 * 109.47028 * 115.45257 * 20 19 18 41 41 H 1.09001 * 109.46693 * 235.44610 * 20 19 18 42 42 H 1.09003 * 109.47322 * 359.75705 * 22 21 19 43 43 H 1.09003 * 109.47246 * 119.75738 * 22 21 19 44 44 H 1.09005 * 109.47032 * 239.75797 * 22 21 19 45 45 H 1.09007 * 109.36080 * 222.66233 * 23 21 19 46 46 H 1.09003 * 109.35656 * 103.07985 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3225 2.0506 1.2672 5 6 3.6966 1.6435 1.7331 6 1 4.2844 0.9547 1.1444 7 6 4.2036 2.1503 2.9109 8 7 5.4026 1.7946 3.3177 9 14 3.1873 3.3421 3.9287 10 1 2.3607 2.5828 4.9010 11 1 4.0922 4.2636 4.6617 12 1 2.3011 4.1276 3.0326 13 6 2.1876 2.0362 -1.1657 14 8 1.8592 1.5120 -2.2089 15 6 2.7849 3.4197 -1.1727 16 6 4.0865 3.4221 -0.3687 17 6 3.0700 3.8508 -2.6170 18 6 1.7931 3.6633 -3.4393 19 6 0.6269 4.2902 -2.7329 20 6 -0.6207 4.5623 -3.5333 21 6 0.6257 4.6114 -1.4790 22 6 -0.6270 5.2242 -0.9077 23 6 1.7939 4.4109 -0.5587 24 1 -0.3634 0.5848 -0.8450 25 1 -0.3633 -1.0242 -0.0839 26 1 -0.3634 0.4394 0.9290 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5849 1.7630 2.0163 30 1 2.2927 3.1307 1.1239 31 1 5.7590 2.1508 4.1465 32 1 4.6585 2.5236 -0.6007 33 1 4.6728 4.3033 -0.6291 34 1 3.8556 3.4409 0.6963 35 1 3.3664 4.8996 -2.6346 36 1 3.8673 3.2346 -3.0327 37 1 1.9195 4.1326 -4.4148 38 1 1.6024 2.5984 -3.5725 39 1 -0.4420 4.3156 -4.5799 40 1 -1.4384 3.9515 -3.1505 41 1 -0.8842 5.6166 -3.4483 42 1 -1.3800 5.3090 -1.6913 43 1 -1.0073 4.5921 -0.1053 44 1 -0.3997 6.2147 -0.5134 45 1 1.4392 4.0225 0.3961 46 1 2.2928 5.3661 -0.3949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930464077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:16 Heat of formation + Delta-G solvation = -27.991840 kcal Electronic energy + Delta-G solvation = -24357.351609 eV Core-core repulsion = 21247.041066 eV Total energy + Delta-G solvation = -3110.310543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05348 -39.00048 -37.20238 -35.64776 -34.57067 -32.91341 -31.77688 -29.64315 -29.51652 -27.80593 -25.48168 -24.87650 -24.62628 -23.55821 -22.13058 -19.61305 -19.06397 -18.34549 -17.44217 -16.53425 -16.38514 -15.99363 -15.75347 -15.56081 -15.10212 -14.81577 -14.69974 -14.64869 -14.32160 -14.01348 -13.62049 -13.41616 -13.26351 -13.16755 -13.08156 -12.90556 -12.84947 -12.77392 -12.59320 -12.47578 -12.37032 -12.12240 -12.04948 -11.97456 -11.76585 -11.61037 -10.94748 -10.90156 -10.72066 -10.08518 -9.37649 -9.17646 -8.25217 -6.26601 1.39651 1.40517 1.42003 1.49838 1.83590 2.34763 2.36436 3.08024 3.59210 3.71954 3.79472 4.09496 4.22550 4.32733 4.35266 4.39953 4.46136 4.51229 4.57320 4.62219 4.68863 4.72526 4.81515 4.84333 4.84526 4.92138 4.95210 4.95982 4.98434 5.00456 5.09041 5.12967 5.15038 5.21714 5.24424 5.30114 5.35488 5.48303 5.56766 5.73272 5.84033 5.91713 6.24084 6.30552 6.70207 6.77321 7.29635 7.46314 8.90841 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.007132 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.623947 B = 3925.253371 C = 4206.119152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.110 3.890 3 N -0.594 5.594 4 C 0.197 3.803 5 C -0.517 4.517 6 H 0.031 0.969 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.923 3.077 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.233 1.233 13 C 0.527 3.473 14 O -0.575 6.575 15 C -0.072 4.072 16 C -0.143 4.143 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.157 4.157 22 C -0.122 4.122 23 C -0.076 4.076 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.267 0.733 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 7.613 -8.153 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 N -0.324 5.324 4 C 0.075 3.925 5 C -0.556 4.556 6 H 0.050 0.950 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.746 3.254 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.155 1.155 13 C 0.317 3.683 14 O -0.457 6.457 15 C -0.075 4.075 16 C -0.200 4.200 17 C -0.127 4.127 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.168 4.168 21 C -0.158 4.158 22 C -0.178 4.178 23 C -0.113 4.113 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.985 7.348 -8.531 16.444 hybrid contribution 0.542 -0.159 0.919 1.079 sum -11.442 7.189 -7.612 15.509 Atomic orbital electron populations 1.21973 0.94484 1.02749 1.01456 1.21349 0.95263 0.82825 1.01824 1.47968 1.63615 1.13897 1.06916 1.20229 0.94713 0.95512 0.82002 1.21335 1.00490 1.27286 1.06503 0.95022 1.25620 0.95705 0.98108 0.98154 1.70036 1.18508 1.45973 1.23520 0.86079 0.79501 0.79810 0.80016 1.19405 1.20988 1.15538 1.20744 0.76756 0.88246 0.82591 1.90370 1.53737 1.69940 1.31693 1.20772 0.96590 0.91749 0.98419 1.22293 0.94653 1.00404 1.02639 1.21464 0.97955 1.01105 0.92148 1.20904 0.92111 1.03236 0.97689 1.20905 0.97287 0.99121 0.94877 1.20910 0.94669 1.01976 0.99197 1.20714 0.96986 1.03442 0.94609 1.21042 0.94919 1.00424 1.01402 1.20640 0.93903 0.98839 0.97929 0.93740 0.89922 0.92393 0.92242 0.90829 0.95112 0.91071 0.92424 0.95294 0.91776 0.89016 0.90122 0.92805 0.90918 0.88406 0.92006 0.91992 0.90240 0.90081 0.92590 0.90991 0.90669 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 10.22 71.98 0.74 -3.76 16 2 C 0.11 4.10 6.07 86.38 0.52 4.62 16 3 N -0.59 -24.40 2.46 -826.16 -2.03 -26.44 16 4 C 0.20 8.42 3.31 85.63 0.28 8.70 16 5 C -0.52 -26.69 6.87 25.60 0.18 -26.52 16 6 H 0.03 1.90 8.03 -2.91 -0.02 1.88 16 7 C 0.02 1.20 5.24 84.66 0.44 1.65 16 8 N -0.94 -54.67 13.96 21.45 0.30 -54.37 16 9 Si 0.92 38.89 27.47 68.60 1.88 40.77 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.23 -8.60 6.54 99.48 0.65 -7.95 16 13 C 0.53 21.36 5.74 87.66 0.50 21.87 16 14 O -0.58 -24.69 12.53 -3.03 -0.04 -24.73 16 15 C -0.07 -2.58 0.51 -52.79 -0.03 -2.61 16 16 C -0.14 -5.62 7.03 71.98 0.51 -5.11 16 17 C -0.09 -2.82 4.67 30.74 0.14 -2.68 16 18 C -0.10 -3.13 5.05 29.66 0.15 -2.98 16 19 C -0.12 -3.41 5.62 -15.09 -0.08 -3.50 16 20 C -0.11 -2.41 8.35 71.24 0.59 -1.81 16 21 C -0.16 -4.46 5.56 -15.09 -0.08 -4.54 16 22 C -0.12 -2.75 9.67 71.24 0.69 -2.06 16 23 C -0.08 -2.40 4.18 29.66 0.12 -2.28 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 28 H 0.07 2.78 8.05 -2.39 -0.02 2.76 16 29 H 0.03 1.28 7.56 -2.39 -0.02 1.26 16 30 H 0.07 2.89 1.80 -2.39 0.00 2.89 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.03 1.27 7.75 -2.38 -0.02 1.26 16 33 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 34 H 0.09 3.95 3.70 -2.39 -0.01 3.94 16 35 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 36 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 3.55 5.08 -10.37 -0.05 3.50 16 39 H 0.06 1.25 7.93 -2.39 -0.02 1.23 16 40 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 41 H 0.08 1.43 7.27 -2.39 -0.02 1.41 16 42 H 0.08 1.56 5.17 -2.39 -0.01 1.55 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.08 2.52 5.22 -2.38 -0.01 2.51 16 46 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 Total: -1.00 -61.15 337.67 5.65 -55.50 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.86 Total: 30.26 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.68 Total: -21.00 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.73 Total: -80.81 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.88 Total: 40.77 kcal Total: -61.15 5.65 -55.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.511 kcal (2) G-P(sol) polarization free energy of solvation -61.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds