Wall clock time and date at job start Tue Mar 31 2020 01:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47316 * 2 1 4 4 C 1.46498 * 120.00141 * 94.79819 * 3 2 1 5 5 C 1.50702 * 109.46858 * 273.83328 * 4 3 2 6 6 H 1.07991 * 120.00024 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99729 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00256 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99874 * 179.97438 * 7 5 4 10 10 H 1.48491 * 109.46988 * 60.00026 * 9 7 5 11 11 H 1.48502 * 109.47087 * 299.99645 * 9 7 5 12 12 H 1.48501 * 109.46788 * 180.02562 * 9 7 5 13 13 C 1.34778 * 119.99726 * 274.79606 * 3 2 1 14 14 O 1.21277 * 120.00336 * 5.53593 * 13 3 2 15 15 C 1.50704 * 119.99794 * 185.53645 * 13 3 2 16 16 C 1.53006 * 109.63846 * 305.50612 * 15 13 3 17 17 C 1.53391 * 109.64093 * 185.08971 * 15 13 3 18 18 C 1.52982 * 108.45612 * 173.07366 * 17 15 13 19 19 C 1.50066 * 110.28983 * 49.13496 * 18 17 15 20 20 C 1.50690 * 117.96390 * 162.99964 * 19 18 17 21 21 C 1.29445 * 124.07147 * 342.97768 * 19 18 17 22 22 C 1.50700 * 117.95751 * 180.47229 * 21 19 18 23 23 C 1.50066 * 124.07952 * 0.48728 * 21 19 18 24 24 H 1.08996 * 109.47195 * 183.93217 * 1 2 3 25 25 H 1.09002 * 109.47059 * 303.93528 * 1 2 3 26 26 H 1.08998 * 109.46861 * 63.93616 * 1 2 3 27 27 H 1.09010 * 109.46985 * 240.00042 * 2 1 3 28 28 H 1.09005 * 109.47432 * 120.00186 * 2 1 3 29 29 H 1.09002 * 109.47132 * 153.83210 * 4 3 2 30 30 H 1.09004 * 109.47071 * 33.83242 * 4 3 2 31 31 H 0.97004 * 119.99865 * 359.97438 * 8 7 5 32 32 H 1.08996 * 109.47309 * 76.68080 * 16 15 13 33 33 H 1.08997 * 109.47205 * 196.68245 * 16 15 13 34 34 H 1.09000 * 109.46898 * 316.68116 * 16 15 13 35 35 H 1.08996 * 109.64124 * 292.55894 * 17 15 13 36 36 H 1.08990 * 109.64611 * 53.19208 * 17 15 13 37 37 H 1.08993 * 109.17848 * 288.94696 * 18 17 15 38 38 H 1.09000 * 109.39220 * 169.44875 * 18 17 15 39 39 H 1.09007 * 109.47469 * 183.45368 * 20 19 18 40 40 H 1.08998 * 109.47514 * 303.45743 * 20 19 18 41 41 H 1.09004 * 109.47607 * 63.45435 * 20 19 18 42 42 H 1.09001 * 109.46846 * 178.96825 * 22 21 19 43 43 H 1.08993 * 109.47348 * 298.97202 * 22 21 19 44 44 H 1.08997 * 109.47298 * 58.97407 * 22 21 19 45 45 H 1.09002 * 109.36128 * 222.66821 * 23 21 19 46 46 H 1.08997 * 109.35376 * 103.08211 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3626 2.0364 1.2642 5 6 1.1250 2.6531 1.8636 6 1 0.1771 2.5661 1.3536 7 6 1.2031 3.3285 3.0631 8 7 2.3574 3.4341 3.6844 9 14 -0.3307 4.0936 3.8057 10 1 -1.3409 3.0343 4.0555 11 1 -0.8885 5.0976 2.8644 12 1 0.0183 4.7577 5.0873 13 6 2.1510 2.0490 -1.1632 14 8 1.7725 1.5442 -2.1989 15 6 2.7697 3.4231 -1.1767 16 6 2.0242 4.3324 -0.1977 17 6 2.6880 4.0114 -2.5910 18 6 3.1620 5.4650 -2.5390 19 6 4.4678 5.5606 -1.8059 20 6 5.2854 6.8146 -1.9793 21 6 4.9355 4.6332 -1.0334 22 6 6.2587 4.8789 -0.3554 23 6 4.2421 3.3283 -0.7713 24 1 -0.3633 -1.0252 0.0705 25 1 -0.3633 0.5737 0.8526 26 1 -0.3633 0.4515 -0.9232 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.1037 2.8143 1.0803 30 1 2.7728 1.2999 1.9553 31 1 3.1539 3.0365 3.2990 32 1 2.3280 4.0951 0.8218 33 1 2.2630 5.3735 -0.4149 34 1 0.9505 4.1764 -0.3025 35 1 3.3321 3.4430 -3.2620 36 1 1.6582 3.9714 -2.9456 37 1 2.4136 6.0674 -2.0243 38 1 3.2893 5.8407 -3.5543 39 1 6.2267 6.7122 -1.4393 40 1 5.4892 6.9719 -3.0384 41 1 4.7315 7.6669 -1.5855 42 1 6.5102 4.0233 0.2713 43 1 7.0333 5.0172 -1.1096 44 1 6.1895 5.7741 0.2627 45 1 4.3100 3.0899 0.2901 46 1 4.7257 2.5401 -1.3483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:19 Heat of formation + Delta-G solvation = -28.891661 kcal Electronic energy + Delta-G solvation = -24081.806864 eV Core-core repulsion = 20971.457302 eV Total energy + Delta-G solvation = -3110.349562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44508 -38.11041 -35.47467 -34.16241 -32.87313 -31.76434 -30.08038 -27.86040 -26.90356 -26.60214 -25.13602 -23.33278 -22.87275 -22.53854 -20.35866 -18.21728 -17.04169 -16.44122 -15.91241 -15.54737 -14.69616 -14.61583 -14.29816 -14.03140 -13.90678 -13.77893 -13.27058 -12.87964 -12.69561 -12.60143 -12.34395 -12.22106 -11.98546 -11.80080 -11.64364 -11.56680 -11.46454 -11.42635 -11.00665 -10.79363 -10.68619 -10.61287 -10.39564 -10.26251 -10.14073 -9.94065 -9.42647 -9.19778 -8.79440 -8.48508 -8.19659 -7.64339 -6.48450 -4.21297 2.46113 3.36443 3.37322 3.41747 3.56430 3.91851 4.43079 4.88000 4.91190 5.21185 5.27189 5.31092 5.43172 5.51649 5.55191 5.66732 5.67167 5.73914 5.78134 5.86379 5.89987 5.93911 6.00547 6.04529 6.09759 6.14850 6.19345 6.21475 6.24006 6.27697 6.46954 6.52953 6.61100 6.61818 6.70228 6.76821 6.86374 6.91731 7.00777 7.34011 7.40836 7.53755 7.88522 8.17674 8.45300 8.68203 8.99603 9.44279 10.86543 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014160 B = 0.007602 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.976981 B = 3682.435176 C = 4713.854523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 N -0.590 5.590 4 C 0.207 3.793 5 C -0.602 4.602 6 H 0.057 0.943 7 C 0.024 3.976 8 N -0.905 5.905 9 Si 1.062 2.938 10 H -0.288 1.288 11 H -0.286 1.286 12 H -0.282 1.282 13 C 0.526 3.474 14 O -0.573 6.573 15 C -0.069 4.069 16 C -0.151 4.151 17 C -0.089 4.089 18 C -0.079 4.079 19 C -0.136 4.136 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.075 4.075 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 2.698 -7.674 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.001 4.001 3 N -0.320 5.320 4 C 0.088 3.912 5 C -0.641 4.641 6 H 0.075 0.925 7 C -0.181 4.181 8 N -0.541 5.541 9 Si 0.890 3.110 10 H -0.215 1.215 11 H -0.213 1.213 12 H -0.207 1.207 13 C 0.314 3.686 14 O -0.454 6.454 15 C -0.072 4.072 16 C -0.208 4.208 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.136 4.136 20 C -0.182 4.182 21 C -0.114 4.114 22 C -0.174 4.174 23 C -0.111 4.111 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.053 3.293 -6.869 8.629 hybrid contribution 0.375 -0.969 -1.186 1.577 sum 4.428 2.323 -8.055 9.481 Atomic orbital electron populations 1.22116 0.96432 1.00800 1.02899 1.21176 0.94626 0.83324 1.00959 1.48013 1.63207 1.13027 1.07745 1.20150 0.97601 0.93276 0.80217 1.22256 0.95235 1.37990 1.08638 0.92524 1.25688 1.02768 0.95616 0.94048 1.70844 0.99616 1.43068 1.40584 0.83611 0.74402 0.76472 0.76466 1.21459 1.21284 1.20719 1.20431 0.78314 0.86838 0.82976 1.90566 1.52080 1.69801 1.32970 1.20678 0.95522 0.93399 0.97577 1.22520 0.99824 0.97005 1.01454 1.21369 1.01677 0.94593 0.95103 1.20398 0.94673 0.97358 0.99174 1.20574 0.97058 0.96080 0.99862 1.21047 0.99626 0.95986 1.01494 1.20585 0.96754 0.95825 0.98248 1.20928 0.94687 1.02024 0.99747 1.20645 0.92866 0.95064 1.02564 0.93198 0.91074 0.92938 0.91959 0.91318 0.92816 0.96441 0.92229 0.86976 0.93342 0.92761 0.91977 0.91343 0.90622 0.91661 0.91426 0.92395 0.92059 0.92283 0.92042 0.91591 0.89202 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.12 2.34 6.08 -4.04 -0.02 2.32 16 3 N -0.59 -12.49 2.46 -175.05 -0.43 -12.92 16 4 C 0.21 4.70 3.78 -5.19 -0.02 4.68 16 5 C -0.60 -14.99 6.23 -34.44 -0.21 -15.21 16 6 H 0.06 1.47 6.90 -52.49 -0.36 1.11 16 7 C 0.02 0.61 5.23 -17.82 -0.09 0.52 16 8 N -0.91 -24.63 13.65 55.43 0.76 -23.87 16 9 Si 1.06 23.69 29.90 -169.99 -5.08 18.61 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 C 0.53 11.21 6.35 -10.98 -0.07 11.14 16 14 O -0.57 -13.30 15.67 5.56 0.09 -13.22 16 15 C -0.07 -1.29 0.49 -155.44 -0.08 -1.36 16 16 C -0.15 -3.04 6.55 37.16 0.24 -2.80 16 17 C -0.09 -1.52 4.29 -26.54 -0.11 -1.63 16 18 C -0.08 -1.14 5.17 -28.20 -0.15 -1.29 16 19 C -0.14 -1.94 5.35 -100.95 -0.54 -2.48 16 20 C -0.13 -1.45 9.65 36.00 0.35 -1.10 16 21 C -0.11 -1.73 5.57 -100.94 -0.56 -2.29 16 22 C -0.12 -1.51 8.34 36.01 0.30 -1.21 16 23 C -0.07 -1.28 4.19 -28.18 -0.12 -1.40 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.44 6.84 -51.93 -0.36 1.09 16 26 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.06 1.16 7.66 -51.92 -0.40 0.76 16 28 H 0.07 1.23 7.88 -51.93 -0.41 0.82 16 29 H 0.05 1.21 2.29 -51.93 -0.12 1.09 16 30 H 0.02 0.42 7.79 -51.93 -0.40 0.02 16 31 H 0.27 7.15 7.22 -40.82 -0.29 6.86 16 32 H 0.11 2.53 3.69 -51.93 -0.19 2.34 16 33 H 0.05 0.89 5.27 -51.93 -0.27 0.61 16 34 H 0.05 1.17 7.70 -51.93 -0.40 0.77 16 35 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 36 H 0.07 1.21 7.99 -51.93 -0.41 0.79 16 37 H 0.08 1.10 6.57 -51.93 -0.34 0.76 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.73 5.19 -51.93 -0.27 0.46 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.75 7.93 -51.93 -0.41 0.34 16 43 H 0.06 0.68 7.49 -51.93 -0.39 0.30 16 44 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 45 H 0.09 1.65 5.38 -51.93 -0.28 1.37 16 46 H 0.07 1.13 8.10 -51.93 -0.42 0.70 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -27.89 338.76 -7.73 -35.62 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.46 Total: 5.45 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.71 Total: -14.77 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.33 Total: -36.80 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.08 Total: 18.61 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.89 -7.73 -35.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.731 kcal (2) G-P(sol) polarization free energy of solvation -27.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds