Wall clock time and date at job start Tue Mar 31 2020 00:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47172 * 2 1 4 4 H 1.08999 * 109.50885 * 53.89033 * 3 2 1 5 5 C 1.53053 * 109.49123 * 293.83658 * 3 2 1 6 6 N 1.46959 * 109.36168 * 298.43260 * 5 3 2 7 7 C 1.46899 * 110.99790 * 176.81001 * 6 5 3 8 8 C 1.53001 * 109.46822 * 69.27371 * 7 6 5 9 9 C 1.47212 * 109.46834 * 180.02562 * 8 7 6 10 10 N 7.57751 * 92.04534 * 305.42124 * 2 1 3 11 11 C 1.46958 * 110.88040 * 300.67769 * 6 5 3 12 12 H 1.08999 * 109.49286 * 299.34914 * 11 6 5 13 13 C 1.53007 * 109.48445 * 179.30855 * 11 6 5 14 14 C 1.53005 * 109.46688 * 181.15901 * 13 11 6 15 15 C 1.53053 * 109.36454 * 59.32400 * 11 6 5 16 16 N 1.46958 * 109.49031 * 173.94328 * 3 2 1 17 17 C 1.46899 * 111.00106 * 296.78102 * 16 3 2 18 18 C 1.50697 * 109.47194 * 176.95616 * 17 16 3 19 19 H 1.07999 * 119.99907 * 359.96215 * 18 17 16 20 20 C 1.37879 * 119.99951 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47296 * 59.99733 * 22 20 18 24 24 H 1.48500 * 109.47372 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47057 * 299.99902 * 22 20 18 26 26 H 1.09000 * 109.47269 * 185.74178 * 1 2 3 27 27 H 1.08999 * 109.47030 * 305.73490 * 1 2 3 28 28 H 1.09001 * 109.47284 * 65.73763 * 1 2 3 29 29 H 1.09006 * 109.46910 * 240.00189 * 2 1 3 30 30 H 1.09004 * 109.47162 * 120.00329 * 2 1 3 31 31 H 1.08993 * 109.49031 * 58.40160 * 5 3 2 32 32 H 1.08998 * 109.48949 * 178.44578 * 5 3 2 33 33 H 1.09001 * 109.46865 * 189.27031 * 7 6 5 34 34 H 1.08993 * 109.47540 * 309.27395 * 7 6 5 35 35 H 1.09001 * 109.47123 * 299.99502 * 8 7 6 36 36 H 1.08996 * 109.47365 * 60.00416 * 8 7 6 37 37 H 1.08993 * 109.47107 * 301.16047 * 13 11 6 38 38 H 1.08998 * 109.47253 * 61.16325 * 13 11 6 39 39 H 1.09002 * 109.46683 * 305.57473 * 14 13 11 40 40 H 1.08998 * 109.46768 * 65.57706 * 14 13 11 41 41 H 1.08996 * 109.46510 * 185.57960 * 14 13 11 42 42 H 1.08993 * 109.49031 * 181.62807 * 15 11 6 43 43 H 1.08999 * 109.48954 * 61.56023 * 15 11 6 44 44 H 1.08999 * 109.47300 * 296.95972 * 17 16 3 45 45 H 1.09004 * 109.46882 * 56.95898 * 17 16 3 46 46 H 0.97003 * 119.99923 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5905 1.9874 0.8300 5 6 1.6605 2.1182 -1.3198 6 7 2.2998 1.4046 -2.4341 7 6 1.8986 1.9780 -3.7257 8 6 2.5127 3.3710 -3.8779 9 6 2.1102 3.9459 -5.1720 10 7 1.8005 4.3890 -6.1711 11 6 3.7621 1.4076 -2.2879 12 1 4.1254 2.4353 -2.2880 13 6 4.3931 0.6430 -3.4534 14 6 5.9137 0.6217 -3.2855 15 6 4.1416 0.7318 -0.9681 16 7 3.5023 1.4454 0.1462 17 6 3.9035 0.8720 1.4378 18 6 5.4074 0.8232 1.5203 19 1 6.0054 1.1817 0.6955 20 6 6.0199 0.3207 2.6487 21 7 5.2917 -0.1156 3.6532 22 14 7.8841 0.2608 2.7513 23 1 8.4311 1.6359 2.6284 24 1 8.2897 -0.3189 4.0569 25 1 8.4137 -0.5828 1.6499 26 1 -0.3634 -1.0225 0.1028 27 1 -0.3633 0.6002 0.8342 28 1 -0.3634 0.4223 -0.9369 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 0.5780 2.0914 -1.4440 32 1 1.9996 3.1540 -1.3086 33 1 2.2501 1.3357 -4.5332 34 1 0.8121 2.0533 -3.7681 35 1 2.1612 4.0133 -3.0704 36 1 3.5992 3.2958 -3.8357 37 1 4.0144 -0.3789 -3.4649 38 1 4.1380 1.1356 -4.3916 39 1 6.2813 1.6418 -3.1746 40 1 6.1732 0.0435 -2.3987 41 1 6.3697 0.1646 -4.1636 42 1 5.2241 0.7587 -0.8439 43 1 3.8020 -0.3039 -0.9792 44 1 3.5151 1.4911 2.2465 45 1 3.5017 -0.1373 1.5277 46 1 5.7227 -0.4688 4.4473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077318758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:18 Heat of formation + Delta-G solvation = 29.503158 kcal Electronic energy + Delta-G solvation = -23336.967362 eV Core-core repulsion = 20261.442741 eV Total energy + Delta-G solvation = -3075.524622 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00679 -37.15582 -35.93062 -34.21013 -32.97959 -31.69916 -30.78358 -28.18652 -27.51937 -25.42717 -24.45115 -23.13287 -22.45830 -21.37049 -20.11145 -18.46413 -17.30241 -16.54440 -16.03054 -15.62834 -14.92458 -14.67089 -14.50677 -14.40645 -14.04647 -13.74587 -13.42190 -13.30540 -12.88204 -12.72307 -12.55498 -12.40172 -12.17911 -11.93301 -11.91799 -11.63104 -11.45974 -11.29455 -11.10358 -11.03956 -10.92521 -10.73575 -10.69587 -10.42779 -10.27130 -10.02230 -9.92880 -9.54592 -9.09547 -8.46605 -8.16638 -7.13259 -6.05230 -4.06564 2.60040 2.63046 3.30704 3.35786 3.37567 3.71113 4.10903 4.39876 4.76259 4.81360 4.89911 5.07464 5.20255 5.21011 5.31169 5.32083 5.42732 5.48607 5.50453 5.67028 5.72677 5.75514 5.79814 5.86852 5.87529 5.93941 6.05819 6.14078 6.21952 6.30146 6.36184 6.42492 6.46198 6.56139 6.66024 6.79866 6.91304 7.14183 7.19579 7.38748 7.41756 7.47951 7.75059 8.06472 8.21377 8.55476 9.00522 9.57677 11.05754 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.005232 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.000364 B = 5350.112374 C = 6332.773253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.153 4.153 3 C 0.085 3.915 4 H 0.076 0.924 5 C 0.059 3.941 6 N -0.522 5.522 7 C 0.060 3.940 8 C -0.073 4.073 9 C 0.215 3.785 10 N -0.447 5.447 11 C 0.078 3.922 12 H 0.052 0.948 13 C -0.117 4.117 14 C -0.154 4.154 15 C 0.069 3.931 16 N -0.534 5.534 17 C 0.192 3.808 18 C -0.513 4.513 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.034 0.966 44 H 0.029 0.971 45 H -0.001 1.001 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 2.078 -11.609 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.192 4.192 3 C -0.025 4.025 4 H 0.094 0.906 5 C -0.068 4.068 6 N -0.245 5.245 7 C -0.070 4.070 8 C -0.115 4.115 9 C -0.103 4.103 10 N -0.124 5.124 11 C -0.030 4.030 12 H 0.070 0.930 13 C -0.155 4.155 14 C -0.212 4.212 15 C -0.060 4.060 16 N -0.257 5.257 17 C 0.067 3.933 18 C -0.552 4.552 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.472 2.659 -12.872 14.651 hybrid contribution 1.125 -0.201 0.691 1.335 sum -5.347 2.458 -12.181 13.528 Atomic orbital electron populations 1.21698 0.96698 1.00697 1.00841 1.22106 0.95232 0.98972 1.02859 1.21721 0.90543 0.94731 0.95459 0.90619 1.22276 0.98306 0.95683 0.90571 1.62424 1.08680 1.52548 1.00806 1.22231 1.00538 0.90468 0.93801 1.20231 1.04121 0.99381 0.87719 1.29177 0.93150 0.93248 0.94739 1.81216 1.09462 1.09534 1.12193 1.21964 0.85965 0.98851 0.96208 0.93014 1.21593 0.95657 1.01232 0.97024 1.21809 0.95314 1.02112 1.01973 1.22130 1.00835 0.95106 0.87899 1.62505 1.03887 1.54872 1.04482 1.19721 0.95847 0.93192 0.84537 1.21170 0.91274 1.40771 1.01952 0.91914 1.24961 0.98230 0.95466 0.95676 1.69945 1.35298 1.42101 1.06182 0.86629 0.85656 0.78354 0.77188 1.20196 1.21378 1.20259 0.93707 0.93447 0.93070 0.90820 0.91622 0.90708 0.94103 0.89703 0.90202 0.87224 0.86896 0.91238 0.92422 0.92739 0.91603 0.93136 0.88972 0.94829 0.95305 0.98379 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.55 37.16 0.35 -1.47 16 2 C -0.15 -2.42 4.61 -26.74 -0.12 -2.54 16 3 C 0.09 1.37 2.42 -67.66 -0.16 1.20 16 4 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.06 0.74 4.56 -3.76 -0.02 0.72 16 6 N -0.52 -6.06 3.95 -226.49 -0.89 -6.96 16 7 C 0.06 0.53 4.75 -3.82 -0.02 0.51 16 8 C -0.07 -0.60 4.84 -29.51 -0.14 -0.74 16 9 C 0.21 2.24 15.43 -20.76 -0.32 1.92 16 10 N -0.45 -5.93 18.54 42.15 0.78 -5.15 16 11 C 0.08 1.02 1.50 -67.65 -0.10 0.91 16 12 H 0.05 0.68 6.42 -51.93 -0.33 0.34 16 13 C -0.12 -1.30 4.98 -26.72 -0.13 -1.44 16 14 C -0.15 -1.78 9.36 37.16 0.35 -1.43 16 15 C 0.07 1.20 3.77 -3.76 -0.01 1.18 16 16 N -0.53 -10.37 4.75 -227.93 -1.08 -11.45 16 17 C 0.19 4.68 4.64 -4.98 -0.02 4.66 16 18 C -0.51 -13.56 8.44 -34.44 -0.29 -13.85 16 19 H 0.06 1.62 6.19 -52.49 -0.33 1.29 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 22 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.59 6.85 -51.93 -0.36 0.23 16 29 H 0.07 1.20 6.11 -51.93 -0.32 0.89 16 30 H 0.07 1.24 6.14 -51.93 -0.32 0.92 16 31 H 0.07 0.81 6.60 -51.93 -0.34 0.47 16 32 H 0.04 0.50 6.73 -51.93 -0.35 0.15 16 33 H 0.08 0.73 6.60 -51.93 -0.34 0.39 16 34 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.11 0.84 6.73 -51.93 -0.35 0.49 16 36 H 0.11 0.91 6.02 -51.93 -0.31 0.59 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.55 6.17 -51.93 -0.32 0.23 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 1.78 4.46 -51.93 -0.23 1.55 16 43 H 0.03 0.63 6.48 -51.93 -0.34 0.29 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.00 -0.04 6.12 -51.93 -0.32 -0.36 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -29.00 343.44 -8.46 -37.46 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.42 Total: -0.98 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.74 Total: -8.87 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.46 Total: -48.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.00 -8.46 -37.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077318758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.963 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds