Wall clock time and date at job start Tue Mar 31 2020 00:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47172 * 2 1 4 4 H 1.08999 * 109.50885 * 53.89033 * 3 2 1 5 5 C 1.53053 * 109.49123 * 293.83658 * 3 2 1 6 6 N 1.46959 * 109.36168 * 298.43260 * 5 3 2 7 7 C 1.46899 * 110.99790 * 176.81001 * 6 5 3 8 8 C 1.53001 * 109.46822 * 69.27371 * 7 6 5 9 9 C 1.47212 * 109.46834 * 180.02562 * 8 7 6 10 10 N 7.57751 * 92.04534 * 305.42124 * 2 1 3 11 11 C 1.46958 * 110.88040 * 300.67769 * 6 5 3 12 12 H 1.08999 * 109.49286 * 299.34914 * 11 6 5 13 13 C 1.53007 * 109.48445 * 179.30855 * 11 6 5 14 14 C 1.53005 * 109.46688 * 181.15901 * 13 11 6 15 15 C 1.53053 * 109.36454 * 59.32400 * 11 6 5 16 16 N 1.46958 * 109.49031 * 173.94328 * 3 2 1 17 17 C 1.46899 * 111.00106 * 296.78102 * 16 3 2 18 18 C 1.50697 * 109.47194 * 176.95616 * 17 16 3 19 19 H 1.07999 * 119.99907 * 359.96215 * 18 17 16 20 20 C 1.37879 * 119.99951 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47296 * 59.99733 * 22 20 18 24 24 H 1.48500 * 109.47372 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47057 * 299.99902 * 22 20 18 26 26 H 1.09000 * 109.47269 * 185.74178 * 1 2 3 27 27 H 1.08999 * 109.47030 * 305.73490 * 1 2 3 28 28 H 1.09001 * 109.47284 * 65.73763 * 1 2 3 29 29 H 1.09006 * 109.46910 * 240.00189 * 2 1 3 30 30 H 1.09004 * 109.47162 * 120.00329 * 2 1 3 31 31 H 1.08993 * 109.49031 * 58.40160 * 5 3 2 32 32 H 1.08998 * 109.48949 * 178.44578 * 5 3 2 33 33 H 1.09001 * 109.46865 * 189.27031 * 7 6 5 34 34 H 1.08993 * 109.47540 * 309.27395 * 7 6 5 35 35 H 1.09001 * 109.47123 * 299.99502 * 8 7 6 36 36 H 1.08996 * 109.47365 * 60.00416 * 8 7 6 37 37 H 1.08993 * 109.47107 * 301.16047 * 13 11 6 38 38 H 1.08998 * 109.47253 * 61.16325 * 13 11 6 39 39 H 1.09002 * 109.46683 * 305.57473 * 14 13 11 40 40 H 1.08998 * 109.46768 * 65.57706 * 14 13 11 41 41 H 1.08996 * 109.46510 * 185.57960 * 14 13 11 42 42 H 1.08993 * 109.49031 * 181.62807 * 15 11 6 43 43 H 1.08999 * 109.48954 * 61.56023 * 15 11 6 44 44 H 1.08999 * 109.47300 * 296.95972 * 17 16 3 45 45 H 1.09004 * 109.46882 * 56.95898 * 17 16 3 46 46 H 0.97003 * 119.99923 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5905 1.9874 0.8300 5 6 1.6605 2.1182 -1.3198 6 7 2.2998 1.4046 -2.4341 7 6 1.8986 1.9780 -3.7257 8 6 2.5127 3.3710 -3.8779 9 6 2.1102 3.9459 -5.1720 10 7 1.8005 4.3890 -6.1711 11 6 3.7621 1.4076 -2.2879 12 1 4.1254 2.4353 -2.2880 13 6 4.3931 0.6430 -3.4534 14 6 5.9137 0.6217 -3.2855 15 6 4.1416 0.7318 -0.9681 16 7 3.5023 1.4454 0.1462 17 6 3.9035 0.8720 1.4378 18 6 5.4074 0.8232 1.5203 19 1 6.0054 1.1817 0.6955 20 6 6.0199 0.3207 2.6487 21 7 5.2917 -0.1156 3.6532 22 14 7.8841 0.2608 2.7513 23 1 8.4311 1.6359 2.6284 24 1 8.2897 -0.3189 4.0569 25 1 8.4137 -0.5828 1.6499 26 1 -0.3634 -1.0225 0.1028 27 1 -0.3633 0.6002 0.8342 28 1 -0.3634 0.4223 -0.9369 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 0.5780 2.0914 -1.4440 32 1 1.9996 3.1540 -1.3086 33 1 2.2501 1.3357 -4.5332 34 1 0.8121 2.0533 -3.7681 35 1 2.1612 4.0133 -3.0704 36 1 3.5992 3.2958 -3.8357 37 1 4.0144 -0.3789 -3.4649 38 1 4.1380 1.1356 -4.3916 39 1 6.2813 1.6418 -3.1746 40 1 6.1732 0.0435 -2.3987 41 1 6.3697 0.1646 -4.1636 42 1 5.2241 0.7587 -0.8439 43 1 3.8020 -0.3039 -0.9792 44 1 3.5151 1.4911 2.2465 45 1 3.5017 -0.1373 1.5277 46 1 5.7227 -0.4688 4.4473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077318758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:17 Heat of formation + Delta-G solvation = 10.684686 kcal Electronic energy + Delta-G solvation = -23337.783393 eV Core-core repulsion = 20261.442741 eV Total energy + Delta-G solvation = -3076.340652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.201 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15685 -38.19556 -37.04522 -35.44998 -34.64088 -33.15437 -31.74612 -29.31908 -29.14922 -26.85295 -25.59888 -24.45584 -23.55727 -22.88579 -21.23551 -19.53936 -18.52955 -18.19284 -17.26119 -16.67713 -16.42715 -15.98501 -15.64382 -15.52946 -15.25184 -15.01292 -14.62233 -14.39606 -14.19204 -13.90818 -13.77598 -13.49985 -13.40586 -13.19913 -12.91383 -12.83063 -12.73362 -12.61474 -12.53655 -12.38995 -12.24145 -12.03004 -11.96620 -11.78619 -11.52438 -11.47714 -11.20972 -11.00760 -10.80648 -10.55314 -9.13328 -8.75543 -8.16414 -6.25111 1.42997 1.45331 1.52754 1.80689 1.84479 2.42896 2.86084 3.17232 3.24572 3.42146 3.95707 4.05235 4.13552 4.20393 4.22987 4.28874 4.42812 4.49471 4.59761 4.62276 4.67062 4.69138 4.76678 4.82138 4.90187 5.00981 5.05766 5.06469 5.13746 5.19284 5.23048 5.25555 5.30885 5.36107 5.39762 5.51042 5.54805 5.56904 5.68867 5.69383 6.09442 6.20011 6.24442 6.47239 6.64275 6.80120 6.93871 7.44483 8.95022 Molecular weight = 279.20amu Principal moments of inertia in cm(-1) A = 0.017673 B = 0.005232 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.000364 B = 5350.112374 C = 6332.773253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C 0.079 3.921 4 H 0.065 0.935 5 C 0.068 3.932 6 N -0.527 5.527 7 C 0.063 3.937 8 C -0.065 4.065 9 C 0.244 3.756 10 N -0.499 5.499 11 C 0.089 3.911 12 H 0.059 0.941 13 C -0.109 4.109 14 C -0.154 4.154 15 C 0.074 3.926 16 N -0.537 5.537 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.020 0.980 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.012 0.988 44 H -0.005 1.005 45 H -0.031 1.031 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 3.005 -13.934 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.182 4.182 3 C -0.030 4.030 4 H 0.083 0.917 5 C -0.060 4.060 6 N -0.250 5.250 7 C -0.066 4.066 8 C -0.107 4.107 9 C -0.073 4.073 10 N -0.177 5.177 11 C -0.019 4.019 12 H 0.077 0.923 13 C -0.147 4.147 14 C -0.212 4.212 15 C -0.055 4.055 16 N -0.261 5.261 17 C 0.082 3.918 18 C -0.561 4.561 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.120 0.880 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.013 0.987 45 H -0.014 1.014 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.670 3.594 -15.228 17.008 hybrid contribution 1.143 -0.516 1.445 1.913 sum -5.527 3.078 -13.783 15.165 Atomic orbital electron populations 1.21631 0.93864 1.01318 1.02236 1.21962 0.97613 0.98253 1.00373 1.21870 0.88152 0.95166 0.97857 0.91723 1.22213 0.99890 0.95490 0.88393 1.62358 1.07481 1.53245 1.01902 1.22275 1.01620 0.90700 0.92027 1.20294 1.04522 0.99000 0.86839 1.29401 0.91624 0.91919 0.94376 1.81262 1.11267 1.11275 1.13893 1.21789 0.87320 0.98782 0.94015 0.92314 1.21551 0.95037 1.00885 0.97262 1.21803 0.95878 1.02031 1.01513 1.22064 0.99234 0.94490 0.89663 1.62409 1.06505 1.54287 1.02854 1.19305 0.94893 0.91057 0.86507 1.21540 0.92408 1.40156 1.02014 0.91421 1.25860 1.03190 0.95099 0.95318 1.70091 1.37341 1.43277 1.06841 0.85550 0.79722 0.78769 0.77307 1.19254 1.21276 1.19143 0.93338 0.93244 0.90567 0.91255 0.96093 0.87988 0.93093 0.88779 0.88592 0.85908 0.86089 0.91900 0.89527 0.92361 0.94255 0.91453 0.91323 0.96934 0.98701 1.01373 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.55 71.98 0.69 -2.55 16 2 C -0.14 -4.62 4.61 30.59 0.14 -4.48 16 3 C 0.08 2.52 2.42 44.92 0.11 2.63 16 4 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 5 C 0.07 1.48 4.56 86.31 0.39 1.88 16 6 N -0.53 -10.60 3.95 -870.48 -3.44 -14.04 16 7 C 0.06 0.84 4.75 86.30 0.41 1.25 16 8 C -0.06 -0.78 4.84 28.79 0.14 -0.64 16 9 C 0.24 4.26 15.43 89.45 1.38 5.64 16 10 N -0.50 -12.11 18.54 20.01 0.37 -11.74 16 11 C 0.09 2.14 1.50 44.92 0.07 2.20 16 12 H 0.06 1.36 6.42 -2.39 -0.02 1.34 16 13 C -0.11 -2.16 4.98 30.60 0.15 -2.01 16 14 C -0.15 -3.30 9.36 71.98 0.67 -2.63 16 15 C 0.07 2.61 3.77 86.31 0.33 2.94 16 16 N -0.54 -21.47 4.75 -875.04 -4.16 -25.63 16 17 C 0.21 10.82 4.64 85.56 0.40 11.22 16 18 C -0.52 -28.67 8.44 25.60 0.22 -28.46 16 19 H 0.07 3.57 6.19 -2.91 -0.02 3.55 16 20 C 0.00 0.18 5.46 84.65 0.46 0.65 16 21 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.49 6.85 -2.39 -0.02 1.48 16 29 H 0.07 2.28 6.11 -2.38 -0.01 2.27 16 30 H 0.02 0.84 6.14 -2.38 -0.01 0.83 16 31 H 0.10 1.75 6.60 -2.39 -0.02 1.73 16 32 H 0.05 1.05 6.73 -2.39 -0.02 1.03 16 33 H 0.09 1.16 6.60 -2.39 -0.02 1.15 16 34 H 0.10 1.07 8.04 -2.39 -0.02 1.05 16 35 H 0.12 1.28 6.73 -2.39 -0.02 1.27 16 36 H 0.12 1.38 6.02 -2.39 -0.01 1.37 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.26 6.17 -2.39 -0.01 1.25 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.04 1.04 6.77 -2.39 -0.02 1.02 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 2.73 4.46 -2.39 -0.01 2.72 16 43 H 0.01 0.49 6.48 -2.39 -0.02 0.47 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H -0.03 -1.78 6.12 -2.38 -0.01 -1.80 16 46 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -66.82 343.44 1.61 -65.21 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.97 Total: 8.81 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.56 Total: -12.37 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -6.94 Total: -107.11 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.82 1.61 -65.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077318758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.892 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds