Wall clock time and date at job start Tue Mar 31 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47376 * 2 1 4 4 C 1.53000 * 109.47283 * 119.99897 * 2 1 3 5 5 C 1.53002 * 109.47139 * 65.00122 * 4 2 1 6 6 N 1.46901 * 109.47206 * 174.63236 * 5 4 2 7 7 C 1.46898 * 110.99878 * 199.71441 * 6 5 4 8 8 C 1.50699 * 109.46942 * 66.04513 * 7 6 5 9 9 H 1.08008 * 120.00460 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00314 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99314 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00243 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47117 * 90.00039 * 12 10 8 14 14 H 1.48500 * 109.46912 * 209.99938 * 12 10 8 15 15 H 1.48499 * 109.47172 * 329.99740 * 12 10 8 16 16 C 1.46899 * 111.00254 * 75.76162 * 6 5 4 17 17 C 1.53001 * 109.47357 * 199.61743 * 16 6 5 18 18 C 1.52999 * 109.47201 * 174.87431 * 17 16 6 19 19 H 1.09002 * 115.54984 * 29.32911 * 18 17 16 20 20 C 1.52999 * 117.49585 * 243.61918 * 18 17 16 21 21 C 1.52999 * 117.49734 * 174.99786 * 18 17 16 22 22 H 1.09005 * 117.49922 * 359.97438 * 21 18 17 23 23 C 1.53001 * 117.50012 * 214.97949 * 21 18 17 24 24 C 1.53004 * 117.49763 * 128.62160 * 23 21 18 25 25 C 1.53003 * 117.49829 * 59.99988 * 23 21 18 26 26 H 1.08996 * 109.46829 * 60.00214 * 1 2 3 27 27 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46818 * 300.00004 * 1 2 3 29 29 H 1.09004 * 109.47331 * 240.00066 * 2 1 3 30 30 H 1.09000 * 109.47476 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46763 * 299.99999 * 3 2 1 32 32 H 1.09000 * 109.47210 * 59.99419 * 3 2 1 33 33 H 1.09003 * 109.46876 * 304.99711 * 4 2 1 34 34 H 1.09000 * 109.47164 * 184.99822 * 4 2 1 35 35 H 1.08991 * 109.47157 * 54.62681 * 5 4 2 36 36 H 1.09006 * 109.46763 * 294.63221 * 5 4 2 37 37 H 1.09001 * 109.47007 * 186.04082 * 7 6 5 38 38 H 1.08996 * 109.47571 * 306.04915 * 7 6 5 39 39 H 0.97002 * 119.99478 * 179.97438 * 11 10 8 40 40 H 1.08998 * 109.47117 * 79.61626 * 16 6 5 41 41 H 1.09005 * 109.47313 * 319.61734 * 16 6 5 42 42 H 1.08998 * 109.46558 * 294.87449 * 17 16 6 43 43 H 1.09003 * 109.46902 * 54.87242 * 17 16 6 44 44 H 1.08989 * 117.50366 * 0.02562 * 20 18 17 45 45 H 1.09006 * 117.49697 * 145.02087 * 20 18 17 46 46 H 1.08997 * 115.54799 * 274.33341 * 23 21 18 47 47 H 1.08994 * 117.49773 * 0.02562 * 24 23 21 48 48 H 1.09001 * 117.49360 * 145.01991 * 24 23 21 49 49 H 1.08997 * 117.49813 * 214.98107 * 25 23 21 50 50 H 1.09000 * 117.49370 * 0.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.2330 -2.9148 2.3208 7 6 2.2735 -4.3606 2.0640 8 6 3.2166 -4.6419 0.9228 9 1 3.7340 -3.8279 0.4365 10 6 3.4192 -5.9383 0.4992 11 7 2.7897 -6.9294 1.0916 12 14 4.5889 -6.2869 -0.9149 13 1 5.9569 -6.5104 -0.3822 14 1 4.1371 -7.4996 -1.6434 15 1 4.6024 -5.1280 -1.8433 16 6 1.5151 -2.6217 3.5685 17 6 2.4086 -2.9620 4.7630 18 6 1.7121 -2.5384 6.0578 19 1 0.6226 -2.5561 6.0330 20 6 2.3826 -1.4485 6.8966 21 6 2.3948 -2.9007 7.3782 22 1 3.3399 -3.4412 7.3245 23 6 1.4958 -3.2596 8.5631 24 6 1.7887 -4.5673 9.3014 25 6 0.5571 -4.4568 8.4004 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 3.1264 -0.6443 1.2951 35 1 1.9892 -2.6308 0.2536 36 1 0.5494 -2.2765 1.2382 37 1 2.6202 -4.8789 2.9580 38 1 1.2747 -4.7117 1.8047 39 1 2.9319 -7.8414 0.7934 40 1 0.6052 -3.2200 3.6132 41 1 1.2559 -1.5633 3.5985 42 1 2.5931 -4.0360 4.7843 43 1 3.3566 -2.4321 4.6702 44 1 3.3195 -1.0330 6.5259 45 1 1.7341 -0.7488 7.4238 46 1 1.1384 -2.4165 9.1543 47 1 2.6221 -5.1716 8.9433 48 1 1.6242 -4.5846 10.3788 49 1 -0.4177 -4.4015 8.8850 50 1 0.5803 -4.9889 7.4494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615744661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:42 Heat of formation + Delta-G solvation = 17.235021 kcal Electronic energy + Delta-G solvation = -22138.219769 eV Core-core repulsion = 19165.703504 eV Total energy + Delta-G solvation = -2972.516264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 279.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.75783 -37.51460 -35.81251 -34.99187 -32.53524 -30.26724 -28.57346 -26.98886 -26.14300 -23.74249 -22.88308 -22.65270 -22.40023 -20.47564 -19.82070 -19.66956 -19.31401 -16.41016 -15.75652 -15.29011 -14.95242 -14.83395 -14.56599 -14.10504 -13.73942 -13.62308 -13.47017 -12.97414 -12.68714 -12.48738 -12.16234 -11.98045 -11.72974 -11.64386 -11.42463 -11.34283 -11.25595 -11.06790 -10.88811 -10.76555 -10.75935 -10.61603 -10.50561 -10.37084 -10.33869 -10.14660 -9.95513 -9.70377 -9.52276 -9.23344 -9.05237 -8.39094 -7.14369 -5.99423 -3.99961 3.33683 3.39647 3.43172 3.62228 4.05052 4.44412 4.55846 4.83318 4.86864 4.96281 5.09854 5.16022 5.20586 5.23736 5.32446 5.36415 5.44638 5.51058 5.61922 5.63373 5.74427 5.75042 5.81954 5.86104 5.93623 5.95123 5.97791 6.04365 6.11142 6.12316 6.16992 6.18830 6.25554 6.28747 6.30119 6.36061 6.41249 6.50412 6.57845 6.67857 6.80249 6.87836 6.92723 7.38347 7.42771 7.86234 8.17526 8.30361 8.62894 9.08375 9.63967 11.11490 Molecular weight = 279.23amu Principal moments of inertia in cm(-1) A = 0.009313 B = 0.004913 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.885643 B = 5698.328193 C = 8145.102690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.062 3.938 6 N -0.538 5.538 7 C 0.193 3.807 8 C -0.505 4.505 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.895 3.105 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.061 3.939 17 C -0.082 4.082 18 C -0.133 4.133 19 H 0.100 0.900 20 C -0.173 4.173 21 C -0.127 4.127 22 H 0.104 0.896 23 C -0.122 4.122 24 C -0.179 4.179 25 C -0.178 4.178 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.018 0.982 37 H 0.031 0.969 38 H -0.013 1.013 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.090 0.910 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 11.803 9.266 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.066 4.066 6 N -0.262 5.262 7 C 0.068 3.932 8 C -0.543 4.543 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.068 4.068 17 C -0.120 4.120 18 C -0.152 4.152 19 H 0.118 0.882 20 C -0.210 4.210 21 C -0.145 4.145 22 H 0.122 0.878 23 C -0.140 4.140 24 C -0.216 4.216 25 C -0.215 4.215 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.108 0.892 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.698 11.757 9.304 15.443 hybrid contribution -0.267 -0.675 -0.754 1.046 sum -3.966 11.082 8.551 14.549 Atomic orbital electron populations 1.21872 0.95819 1.01891 1.00814 1.21120 0.95496 0.95747 0.99365 1.21821 1.00915 0.96380 1.00992 1.21632 1.01280 0.95463 0.96030 1.22029 0.95418 0.92876 0.96261 1.62064 1.51376 1.12161 1.00627 1.19734 0.95447 0.80993 0.97056 1.21188 1.25071 0.92305 1.15768 0.91915 1.24980 0.96275 0.96248 0.97089 1.69963 1.42820 0.99383 1.41738 0.86546 0.81154 0.77675 0.82333 1.20676 1.21385 1.19866 1.21979 0.94573 0.99150 0.91060 1.21143 0.98462 1.01709 0.90643 1.22448 0.98930 1.02242 0.91598 0.88212 1.23121 1.02666 0.91169 1.04077 1.21845 1.00073 0.98598 0.93974 0.87758 1.21730 1.01541 0.91936 0.98785 1.22966 1.00285 1.00454 0.97890 1.22979 0.94347 1.02198 1.01947 0.93413 0.92311 0.93187 0.91182 0.92800 0.93298 0.93096 0.93052 0.91496 0.89865 0.96395 0.95065 0.99476 0.93020 0.96076 0.92372 0.91358 0.91339 0.88801 0.89389 0.88122 0.88693 0.89161 0.89167 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.10 -1.34 2.92 -90.62 -0.26 -1.60 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.11 -1.68 4.72 -26.73 -0.13 -1.81 16 5 C 0.06 1.21 4.41 -3.82 -0.02 1.19 16 6 N -0.54 -11.52 4.36 -236.07 -1.03 -12.55 16 7 C 0.19 5.02 4.55 -4.98 -0.02 5.00 16 8 C -0.50 -14.16 8.23 -34.44 -0.28 -14.45 16 9 H 0.06 1.75 7.31 -52.48 -0.38 1.37 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 12 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.06 1.11 4.77 -3.82 -0.02 1.09 16 17 C -0.08 -1.37 5.53 -26.73 -0.15 -1.52 16 18 C -0.13 -1.82 5.38 -90.62 -0.49 -2.31 16 19 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 20 C -0.17 -2.05 9.90 -26.73 -0.26 -2.32 16 21 C -0.13 -1.58 5.59 -90.62 -0.51 -2.08 16 22 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 23 C -0.12 -1.35 5.87 -90.62 -0.53 -1.88 16 24 C -0.18 -1.86 10.25 -26.73 -0.27 -2.13 16 25 C -0.18 -1.96 10.18 -26.73 -0.27 -2.24 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.80 6.69 -51.93 -0.35 0.45 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.78 6.90 -51.93 -0.36 0.42 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.08 1.81 6.58 -51.93 -0.34 1.47 16 36 H 0.02 0.34 6.69 -51.93 -0.35 -0.01 16 37 H 0.03 0.87 6.71 -51.93 -0.35 0.52 16 38 H -0.01 -0.35 8.12 -51.93 -0.42 -0.78 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 41 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 42 H 0.07 1.30 6.95 -51.93 -0.36 0.93 16 43 H 0.07 1.17 7.88 -51.93 -0.41 0.76 16 44 H 0.09 1.10 8.03 -51.94 -0.42 0.69 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -28.81 391.18 -12.02 -40.83 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.96 Total: 1.62 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -2.64 Total: -26.42 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.29 Total: -38.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.81 -12.02 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615744661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.066 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds