Wall clock time and date at job start Tue Mar 31 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 C 1.76196 * 107.21610 * 179.72181 * 9 7 2 13 13 C 1.38272 * 119.98199 * 269.72112 * 12 9 7 14 14 C 1.38208 * 120.04190 * 179.76870 * 13 12 9 15 15 C 1.38346 * 119.99518 * 0.50630 * 14 13 12 16 16 Cl 1.73596 * 120.01630 * 179.72300 * 15 14 13 17 17 C 1.38446 * 119.96538 * 359.74935 * 15 14 13 18 18 Cl 1.73599 * 120.02044 * 180.02562 * 17 15 14 19 19 C 1.38210 * 119.98400 * 89.99537 * 12 9 7 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.97882 * 359.97438 * 13 12 9 22 22 H 1.07991 * 120.00271 * 180.25371 * 14 13 12 23 23 H 1.07994 * 119.99676 * 359.96344 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 6 2.3201 -4.0132 -0.0120 13 6 2.7852 -4.5190 -1.2119 14 6 3.7275 -5.5301 -1.2178 15 6 4.1980 -6.0439 -0.0226 16 17 5.3762 -7.3189 -0.0294 17 6 3.7284 -5.5412 1.1788 18 17 4.3184 -6.1845 2.6794 19 6 2.7892 -4.5255 1.1829 20 1 -0.4850 0.8401 -0.0004 21 1 2.4145 -4.1214 -2.1451 22 1 4.0933 -5.9218 -2.1553 23 1 2.4226 -4.1326 2.1197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000095597.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:50 Heat of formation + Delta-G solvation = -81.341408 kcal Electronic energy + Delta-G solvation = -15083.105192 eV Core-core repulsion = 12074.626289 eV Total energy + Delta-G solvation = -3008.478902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 279.951 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24424 -36.63615 -36.49060 -35.41768 -34.13802 -33.21097 -31.01881 -30.65490 -26.26625 -23.15117 -22.87647 -19.00126 -18.00799 -16.88716 -16.07768 -15.94650 -15.19263 -14.66231 -14.25536 -13.93889 -13.88019 -13.63118 -12.56200 -12.13530 -11.94934 -11.91179 -11.52004 -11.32865 -11.26294 -11.12007 -10.98204 -10.68171 -10.44330 -10.34450 -9.90262 -9.33740 -9.13621 -8.91209 -8.76954 -6.82544 -5.47014 0.70533 1.12449 1.74268 1.87544 2.18598 3.03958 3.08636 3.13888 3.32960 3.98887 4.52348 4.59689 5.02875 5.16570 5.21731 5.33377 5.64441 5.67715 5.75269 5.97137 6.11439 6.58865 6.73920 7.19484 7.81407 8.75071 10.12366 Molecular weight = 279.95amu Principal moments of inertia in cm(-1) A = 0.027498 B = 0.005525 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.998080 B = 5066.395688 C = 5172.165034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.132 3.868 3 Si 0.926 3.074 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.000 5.000 8 H 0.106 0.894 9 S 2.602 3.398 10 O -0.977 6.977 11 O -0.977 6.977 12 C -0.628 4.628 13 C -0.011 4.011 14 C -0.125 4.125 15 C 0.002 3.998 16 Cl -0.054 7.054 17 C -0.056 4.056 18 Cl -0.053 7.053 19 C -0.005 4.005 20 H 0.294 0.706 21 H 0.157 0.843 22 H 0.147 0.853 23 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -8.888 -0.195 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.086 4.086 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.134 5.134 8 H 0.124 0.876 9 S 2.781 3.219 10 O -0.974 6.974 11 O -0.974 6.974 12 C -0.707 4.707 13 C -0.030 4.030 14 C -0.145 4.145 15 C -0.025 4.025 16 Cl -0.025 7.025 17 C -0.084 4.084 18 Cl -0.024 7.024 19 C -0.025 4.025 20 H 0.105 0.895 21 H 0.175 0.825 22 H 0.164 0.836 23 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.967 -9.214 -0.056 12.180 hybrid contribution 1.514 0.544 0.143 1.615 sum 9.480 -8.670 0.086 12.847 Atomic orbital electron populations 1.69882 1.06744 1.31174 1.39119 1.24776 0.94595 1.00819 0.88441 0.86112 0.79827 0.79188 0.79981 1.18700 1.19957 1.18678 1.30013 1.05907 1.09620 1.67830 0.87582 1.01351 0.73018 0.73916 0.73621 1.93362 1.71833 1.87486 1.44701 1.93357 1.71793 1.87529 1.44713 1.32003 1.20637 1.20788 0.97314 1.21138 0.91531 0.92101 0.98207 1.21164 0.98680 0.98196 0.96443 1.20966 0.94541 0.93208 0.93830 1.98376 1.56103 1.49094 1.98902 1.20839 1.01140 0.99991 0.86469 1.98369 1.87378 1.85553 1.31110 1.20933 0.91066 0.91306 0.99163 0.89543 0.82508 0.83551 0.82238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.32 13.19 55.43 0.73 -22.59 14 2 C 0.13 3.48 5.46 -17.82 -0.10 3.38 14 3 Si 0.93 19.48 29.54 -169.99 -5.02 14.46 14 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 14 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 14 7 C -1.00 -25.69 9.58 30.60 0.29 -25.40 14 8 H 0.11 2.47 7.81 -52.49 -0.41 2.06 14 9 S 2.60 64.37 4.65 -107.50 -0.50 63.87 14 10 O -0.98 -26.51 17.16 -57.17 -0.98 -27.49 14 11 O -0.98 -26.19 17.15 -57.17 -0.98 -27.17 14 12 C -0.63 -12.26 5.81 -39.58 -0.23 -12.49 14 13 C -0.01 -0.18 9.52 -39.58 -0.38 -0.56 14 14 C -0.13 -1.77 9.83 -39.55 -0.39 -2.15 14 15 C 0.00 0.03 6.32 -39.47 -0.25 -0.22 14 16 Cl -0.05 -0.67 27.96 -51.86 -1.45 -2.12 14 17 C -0.06 -0.90 6.32 -39.46 -0.25 -1.15 14 18 Cl -0.05 -0.75 27.96 -51.86 -1.45 -2.20 14 19 C -0.01 -0.10 9.31 -39.55 -0.37 -0.47 14 20 H 0.29 7.33 8.31 -40.82 -0.34 6.99 14 21 H 0.16 2.42 7.61 -52.49 -0.40 2.02 14 22 H 0.15 1.57 8.06 -52.49 -0.42 1.14 14 23 H 0.16 2.80 7.62 -52.49 -0.40 2.40 14 LS Contribution 260.51 15.07 3.93 3.93 Total: -1.00 -30.61 260.51 -8.16 -38.77 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -0.77 Total: -0.40 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: -1.67 Total: -39.05 kcal Atomic # 7 Polarization: -23.32 SS G_CDS: 0.73 Total: -22.59 kcal Atomic # 8 Polarization: -52.70 SS G_CDS: -1.96 Total: -54.66 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 64.37 SS G_CDS: -0.50 Total: 63.87 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.90 Total: -4.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.61 -8.16 -38.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000095597.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.571 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds