Wall clock time and date at job start Tue Mar 31 2020 01:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14725 * 260.27863 * 3 2 1 5 5 C 1.37931 * 119.84545 * 179.72103 * 4 3 2 6 6 C 1.38387 * 120.14776 * 0.57637 * 5 4 3 7 7 C 1.38342 * 120.30616 * 359.68028 * 6 5 4 8 8 C 1.50696 * 119.92571 * 180.02562 * 7 6 5 9 9 S 1.81408 * 109.46940 * 270.01955 * 8 7 6 10 10 O 1.42095 * 110.53948 * 291.62270 * 9 8 7 11 11 O 1.42093 * 110.54411 * 68.37177 * 9 8 7 12 12 N 1.65593 * 104.45024 * 179.97438 * 9 8 7 13 13 C 1.46503 * 120.00080 * 64.99499 * 12 9 8 14 14 C 1.50700 * 109.47189 * 164.99979 * 13 12 9 15 15 H 1.08010 * 119.99960 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00170 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99865 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99755 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47158 * 90.00155 * 18 16 14 20 20 H 1.48495 * 109.47159 * 209.99636 * 18 16 14 21 21 H 1.48502 * 109.47340 * 330.00257 * 18 16 14 22 22 C 1.37967 * 120.14964 * 0.03915 * 7 6 5 23 23 H 1.08004 * 120.07835 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.92387 * 180.27808 * 5 4 3 25 25 H 1.08001 * 119.84964 * 179.69650 * 6 5 4 26 26 H 1.09000 * 109.47242 * 30.01456 * 8 7 6 27 27 H 1.09003 * 109.47479 * 150.02051 * 8 7 6 28 28 H 0.96999 * 120.00077 * 244.99750 * 12 9 8 29 29 H 1.08997 * 109.47519 * 285.00292 * 13 12 9 30 30 H 1.09003 * 109.46761 * 45.00431 * 13 12 9 31 31 H 0.96997 * 119.99465 * 180.02562 * 17 16 14 32 32 H 1.08003 * 120.07671 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2049 1.1903 5 6 4.6485 0.1985 1.1841 6 6 5.3374 0.0023 0.0000 7 6 4.6490 -0.1953 -1.1836 8 6 5.4077 -0.4088 -2.4680 9 16 5.7116 1.1927 -3.2640 10 8 4.4935 1.7570 -3.7300 11 8 6.6309 1.9623 -2.5013 12 7 6.5429 0.8162 -4.6458 13 6 5.8940 0.0337 -5.7008 14 6 6.6982 0.1388 -6.9710 15 1 7.6026 0.7290 -6.9903 16 6 6.2796 -0.5187 -8.1084 17 7 6.9818 -0.4274 -9.2167 18 14 4.7152 -1.5389 -8.0751 19 1 3.5585 -0.6836 -8.4438 20 1 4.8329 -2.6572 -9.0450 21 1 4.5105 -2.0868 -6.7101 22 6 3.2693 -0.1971 -1.1908 23 1 2.7328 0.3633 2.1142 24 1 5.1921 0.3518 2.1046 25 1 6.4174 0.0031 -0.0001 26 1 6.3598 -0.8932 -2.2513 27 1 4.8219 -1.0409 -3.1354 28 1 7.4594 1.1137 -4.7568 29 1 5.8340 -1.0105 -5.3941 30 1 4.8895 0.4199 -5.8739 31 1 6.6870 -0.8896 -10.0169 32 1 2.7331 -0.3519 -2.1154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487400821.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:08 Heat of formation + Delta-G solvation = -20.135737 kcal Electronic energy + Delta-G solvation = -18700.356503 eV Core-core repulsion = 15560.214303 eV Total energy + Delta-G solvation = -3140.142200 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93545 -36.81585 -36.75398 -35.65276 -34.85741 -33.45060 -32.27945 -31.68043 -27.76206 -27.43950 -24.28164 -22.41651 -22.12809 -19.38365 -18.56390 -17.77127 -16.69138 -16.49043 -16.24466 -16.00252 -15.63032 -14.77255 -14.58788 -14.29777 -13.77415 -13.65118 -13.40574 -13.23596 -13.04307 -12.73926 -12.65997 -12.55205 -12.10333 -11.91762 -11.79471 -11.69068 -11.59996 -11.08197 -10.95323 -10.67232 -10.05601 -9.60172 -9.37056 -9.23573 -8.89708 -8.55867 -6.25430 -4.27509 0.25256 0.49229 0.99478 2.38964 2.62675 3.12420 3.18784 3.23696 3.27969 3.49783 3.53063 3.92000 4.21881 4.24687 4.29137 4.51862 4.64687 4.82499 4.94096 5.07666 5.09931 5.21497 5.42815 5.57584 5.83910 5.89125 6.00953 6.04515 6.36113 6.70822 6.81252 7.20036 7.31738 7.73809 8.30122 8.76386 9.31930 10.86995 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021706 B = 0.004729 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.668173 B = 5918.935297 C = 6741.556618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.256 3.744 3 C -0.027 4.027 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.084 4.084 8 C -0.599 4.599 9 S 2.606 3.394 10 O -0.951 6.951 11 O -0.965 6.965 12 N -1.097 6.097 13 C 0.212 3.788 14 C -0.533 4.533 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.890 5.890 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.264 1.264 22 C -0.059 4.059 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.416 0.584 29 H 0.019 0.981 30 H 0.033 0.967 31 H 0.268 0.732 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 -2.380 19.936 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.059 4.059 3 C -0.030 4.030 4 C -0.088 4.088 5 C -0.135 4.135 6 C -0.096 4.096 7 C -0.086 4.086 8 C -0.724 4.724 9 S 2.696 3.304 10 O -0.941 6.941 11 O -0.955 6.955 12 N -0.859 5.859 13 C 0.087 3.913 14 C -0.572 4.572 15 H 0.101 0.899 16 C -0.129 4.129 17 N -0.528 5.528 18 Si 0.699 3.301 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.080 4.080 23 H 0.154 0.846 24 H 0.158 0.842 25 H 0.159 0.841 26 H 0.165 0.835 27 H 0.164 0.836 28 H 0.251 0.749 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.870 -1.662 20.009 20.660 hybrid contribution 0.145 -1.287 -0.344 1.340 sum -4.725 -2.948 19.665 20.438 Atomic orbital electron populations 1.81259 1.11963 1.08552 1.07105 1.25609 0.92550 0.93846 0.93942 1.15918 0.84496 1.07545 0.95082 1.21270 0.94490 0.96317 0.96684 1.21123 0.93542 1.00169 0.98617 1.21493 1.01250 0.95342 0.91511 1.18942 0.92935 1.03045 0.93650 1.29844 1.09911 1.26907 1.05771 1.05072 0.74755 0.76359 0.74169 1.93595 1.47630 1.73947 1.78949 1.93557 1.63120 1.66726 1.72115 1.55329 1.27655 1.70940 1.31933 1.19512 0.94400 0.89749 0.87600 1.21031 1.11078 1.32492 0.92601 0.89901 1.24872 0.96935 0.95956 0.95134 1.69873 1.38855 1.42805 1.01237 0.86901 0.83996 0.80524 0.78635 1.19552 1.20752 1.18863 1.21262 0.93410 0.95685 0.97660 0.84551 0.84174 0.84133 0.83459 0.83622 0.74871 0.96335 0.94930 0.92199 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.63 18.54 41.83 0.78 -4.86 16 2 C 0.26 2.92 15.33 -22.47 -0.34 2.58 16 3 C -0.03 -0.26 5.73 -106.93 -0.61 -0.88 16 4 C -0.07 -0.49 9.76 -39.17 -0.38 -0.87 16 5 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 6 C -0.08 -0.66 9.69 -39.49 -0.38 -1.04 16 7 C -0.08 -0.88 5.13 -104.68 -0.54 -1.42 16 8 C -0.60 -6.62 6.20 36.00 0.22 -6.39 16 9 S 2.61 40.95 5.44 -107.50 -0.58 40.36 16 10 O -0.95 -18.21 17.50 -57.54 -1.01 -19.22 16 11 O -0.97 -16.43 18.08 -57.54 -1.04 -17.47 16 12 N -1.10 -19.76 5.88 -11.65 -0.07 -19.83 16 13 C 0.21 4.57 4.95 -5.19 -0.03 4.54 16 14 C -0.53 -13.99 9.83 -34.44 -0.34 -14.33 16 15 H 0.08 2.32 7.90 -52.48 -0.41 1.91 16 16 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 18 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.26 -5.49 6.54 56.52 0.37 -5.13 16 22 C -0.06 -0.62 9.40 -39.17 -0.37 -0.99 16 23 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 24 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 25 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 26 H 0.15 1.23 8.08 -51.92 -0.42 0.81 16 27 H 0.15 1.47 8.08 -51.92 -0.42 1.05 16 28 H 0.42 7.14 8.50 -34.46 -0.29 6.85 16 29 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 30 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -33.66 306.56 -7.61 -41.28 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -3.15 Total: 2.97 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -3.26 Total: -18.06 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 1.48 Total: -49.67 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -2.05 Total: -36.69 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 16 Polarization: 40.95 SS G_CDS: -0.58 Total: 40.36 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.66 -7.61 -41.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487400821.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.141 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds