Wall clock time and date at job start Tue Mar 31 2020 01:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 120.00420 * 2 1 4 4 H 1.07998 * 120.00175 * 204.35097 * 3 2 1 5 5 C 1.38812 * 119.99870 * 24.35666 * 3 2 1 6 6 N 1.31617 * 119.99872 * 13.51111 * 5 3 2 7 7 Si 1.86795 * 119.99980 * 193.50762 * 5 3 2 8 8 H 1.48500 * 109.47090 * 60.00326 * 7 5 3 9 9 H 1.48503 * 109.46991 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47184 * 300.00045 * 7 5 3 11 11 C 1.46503 * 119.99982 * 179.97438 * 2 1 3 12 12 F 1.39902 * 109.46829 * 301.62656 * 11 2 1 13 13 F 1.39898 * 109.47537 * 181.62403 * 11 2 1 14 14 C 1.50704 * 109.47032 * 61.62125 * 11 2 1 15 15 C 1.38682 * 120.79030 * 240.37580 * 14 11 2 16 16 C 1.38145 * 119.21757 * 179.97438 * 15 14 11 17 17 N 1.31910 * 120.83655 * 0.02562 * 16 15 14 18 18 C 1.31925 * 121.72991 * 359.96129 * 17 16 15 19 19 Cl 1.73597 * 119.65113 * 180.02562 * 18 17 16 20 20 C 1.38629 * 120.69603 * 0.04166 * 18 17 16 21 21 F 1.35099 * 120.45030 * 180.25489 * 20 18 17 22 22 H 1.09003 * 109.47050 * 270.62096 * 1 2 3 23 23 H 1.09005 * 109.46748 * 30.60839 * 1 2 3 24 24 H 1.08992 * 109.47540 * 150.61260 * 1 2 3 25 25 H 0.96998 * 120.00190 * 179.97438 * 6 5 3 26 26 H 1.07999 * 120.39685 * 359.95055 * 15 14 11 27 27 H 1.08002 * 119.58487 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1577 1.2274 -0.3856 5 6 1.5484 2.3346 0.4958 6 7 0.4413 2.2454 1.2020 7 14 2.3105 4.0068 0.1608 8 1 2.3720 4.2381 -1.3048 9 1 1.4826 5.0640 0.7950 10 1 3.6829 4.0476 0.7265 11 6 2.1975 -1.2688 0.0006 12 9 1.8316 -2.0179 1.1240 13 9 3.5724 -1.0135 0.0378 14 6 1.8638 -2.0420 -1.2492 15 6 1.2759 -3.2957 -1.1726 16 6 0.9833 -3.9757 -2.3389 17 7 1.2566 -3.4474 -3.5163 18 6 1.8151 -2.2577 -3.6302 19 17 2.1505 -1.6137 -5.2070 20 6 2.1372 -1.5164 -2.5039 21 9 2.7044 -0.2964 -2.6263 22 1 -0.3633 0.0111 1.0276 23 1 -0.3633 0.8845 -0.5233 24 1 -0.3634 -0.8953 -0.5042 25 1 0.0213 3.0480 1.5487 26 1 1.0498 -3.7355 -0.2125 27 1 0.5259 -4.9526 -2.2862 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165091821.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:37 Heat of formation + Delta-G solvation = -74.627224 kcal Electronic energy + Delta-G solvation = -20487.935646 eV Core-core repulsion = 16665.696977 eV Total energy + Delta-G solvation = -3822.238670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.028 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.76936 -48.08218 -46.27399 -40.12639 -36.74657 -35.49706 -33.04762 -31.03654 -30.70464 -26.41718 -26.02827 -23.61692 -23.29438 -21.00872 -17.99758 -17.74244 -17.49456 -17.09008 -16.26824 -15.93401 -15.63265 -15.38844 -14.50283 -14.34323 -13.75007 -13.62645 -13.14763 -13.04852 -12.64020 -12.51324 -12.33553 -12.19509 -11.83750 -11.82101 -11.36700 -11.12480 -10.88056 -10.67175 -10.22966 -10.20920 -9.85713 -9.82133 -8.87225 -8.79426 -7.35559 -5.99833 -3.56198 0.67318 0.78151 1.64852 3.31906 3.32454 3.36193 3.38787 3.66273 3.93553 4.24275 4.36954 4.61574 4.79953 4.82023 5.20156 5.25697 5.47116 5.61304 5.68624 6.00610 6.28797 6.39105 7.03044 7.38511 7.42446 7.66498 7.98334 8.88617 9.41650 9.88938 11.06317 Molecular weight = 280.03amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.007696 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.851896 B = 3637.513869 C = 4418.388109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.276 4.276 4 H 0.083 0.917 5 C 0.019 3.981 6 N -0.898 5.898 7 Si 0.917 3.083 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.555 3.445 12 F -0.215 7.215 13 F -0.181 7.181 14 C -0.119 4.119 15 C -0.113 4.113 16 C 0.097 3.903 17 N -0.446 5.446 18 C 0.130 3.870 19 Cl -0.013 7.013 20 C 0.127 3.873 21 F -0.089 7.089 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.002 0.998 25 H 0.259 0.741 26 H 0.160 0.840 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -10.503 -7.028 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.325 5.325 3 C -0.404 4.404 4 H 0.101 0.899 5 C -0.182 4.182 6 N -0.540 5.540 7 Si 0.745 3.255 8 H -0.204 1.204 9 H -0.213 1.213 10 H -0.204 1.204 11 C 0.430 3.570 12 F -0.197 7.197 13 F -0.162 7.162 14 C -0.132 4.132 15 C -0.133 4.133 16 C -0.060 4.060 17 N -0.156 5.156 18 C -0.036 4.036 19 Cl 0.015 6.985 20 C 0.103 3.897 21 F -0.067 7.067 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.020 0.980 25 H 0.069 0.931 26 H 0.177 0.823 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.207 -10.693 -7.794 13.234 hybrid contribution 0.674 1.524 0.699 1.807 sum 0.881 -9.169 -7.095 11.627 Atomic orbital electron populations 1.20875 0.79846 0.97292 1.00010 1.45228 1.03419 0.99168 1.84681 1.19182 1.00772 0.83754 1.36720 0.89913 1.25166 0.97630 0.99187 0.96196 1.70069 1.20217 1.28506 1.35195 0.86152 0.78674 0.82323 0.78358 1.20370 1.21333 1.20356 1.17928 0.75253 0.83620 0.80243 1.93041 1.91697 1.78774 1.56193 1.92981 1.32024 1.94498 1.96734 1.21449 1.00786 0.96055 0.94898 1.22215 0.96392 0.92853 1.01862 1.22684 0.97579 1.00168 0.85596 1.67048 1.10269 1.09317 1.28975 1.21660 1.01981 0.92704 0.87258 1.98415 1.93021 1.83911 1.23131 1.17860 0.96885 0.82879 0.92055 1.91693 1.80584 1.38167 1.96217 0.94131 0.91811 0.97971 0.93052 0.82252 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.87 8.73 59.84 0.52 4.39 15 2 N -0.60 -14.93 2.63 -180.80 -0.47 -15.41 15 3 C -0.28 -7.50 8.70 -15.06 -0.13 -7.63 15 4 H 0.08 2.26 7.21 -52.49 -0.38 1.88 15 5 C 0.02 0.51 5.05 -17.43 -0.09 0.42 15 6 N -0.90 -25.21 10.85 55.49 0.60 -24.61 15 7 Si 0.92 21.47 29.57 -169.99 -5.03 16.44 15 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 11 C 0.55 12.14 2.14 -5.19 -0.01 12.13 15 12 F -0.22 -4.56 15.86 2.25 0.04 -4.52 15 13 F -0.18 -4.16 15.55 2.25 0.04 -4.12 15 14 C -0.12 -2.16 4.32 -104.27 -0.45 -2.61 15 15 C -0.11 -1.56 9.50 -39.45 -0.37 -1.94 15 16 C 0.10 1.17 11.18 -17.55 -0.20 0.97 15 17 N -0.45 -6.49 10.34 -10.31 -0.11 -6.60 15 18 C 0.13 2.09 7.28 -17.37 -0.13 1.97 15 19 Cl -0.01 -0.19 28.78 -51.86 -1.49 -1.69 15 20 C 0.13 2.32 7.11 -39.25 -0.28 2.04 15 21 F -0.09 -1.83 15.61 2.25 0.04 -1.79 15 22 H 0.04 1.03 7.57 -51.93 -0.39 0.63 15 23 H 0.06 1.61 7.14 -51.93 -0.37 1.24 15 24 H 0.00 0.04 7.34 -51.93 -0.38 -0.34 15 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 26 H 0.16 1.87 7.27 -52.49 -0.38 1.48 15 27 H 0.18 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -29.47 267.42 -4.96 -34.43 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: -1.46 Total: -5.90 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -1.13 Total: 9.74 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.02 Total: -46.62 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 0.11 Total: -10.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.49 Total: -1.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.47 -4.96 -34.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165091821.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.198 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds