Wall clock time and date at job start Tue Mar 31 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46929 * 299.99501 * 3 2 1 6 6 H 1.48501 * 109.47407 * 59.99681 * 3 2 1 7 7 C 1.40158 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 180.02562 * 7 2 1 9 9 C 1.40767 * 120.00085 * 0.02562 * 7 2 1 10 10 N 1.33983 * 120.29050 * 9.09721 * 9 7 2 11 11 C 1.31599 * 119.90212 * 179.97438 * 10 9 7 12 12 C 1.39194 * 120.51504 * 359.97438 * 11 10 9 13 13 N 1.31997 * 120.59533 * 0.02562 * 12 11 10 14 14 C 1.32898 * 120.07788 * 359.97438 * 13 12 11 15 15 C 1.47708 * 120.25495 * 179.97438 * 14 13 12 16 16 C 1.39753 * 120.14378 * 232.82555 * 15 14 13 17 17 C 1.38047 * 119.88744 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.90242 * 179.97438 * 17 16 15 19 19 C 1.38677 * 120.18996 * 0.02562 * 17 16 15 20 20 C 1.38446 * 120.29863 * 359.97438 * 19 17 16 21 21 F 1.35097 * 119.94789 * 179.97438 * 20 19 17 22 22 C 1.38445 * 120.10693 * 359.74923 * 20 19 17 23 23 F 1.35102 * 120.09596 * 180.27694 * 22 20 19 24 24 H 0.97002 * 120.00099 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.74446 * 179.72826 * 11 10 9 26 26 H 1.08004 * 119.70715 * 179.97438 * 12 11 10 27 27 H 1.07998 * 120.05606 * 359.95801 * 16 15 14 28 28 H 1.07996 * 119.84931 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0077 -1.2138 0.0005 8 1 3.0876 -1.2139 0.0010 9 6 1.3039 -2.4329 0.0005 10 7 -0.0233 -2.4470 -0.1829 11 6 -0.6735 -3.5911 -0.1820 12 6 0.0067 -4.7906 0.0078 13 7 1.3140 -4.7999 0.1904 14 6 1.9942 -3.6582 0.1938 15 6 3.4570 -3.6641 0.3983 16 6 4.0303 -2.8627 1.3894 17 6 5.3981 -2.8727 1.5763 18 9 5.9526 -2.0978 2.5339 19 6 6.2045 -3.6751 0.7831 20 6 5.6448 -4.4719 -0.2010 21 9 6.4370 -5.2504 -0.9700 22 6 4.2740 -4.4758 -0.3953 23 9 3.7276 -5.2577 -1.3520 24 1 -0.4850 0.8401 0.0004 25 1 -1.7439 -3.5992 -0.3257 26 1 -0.5400 -5.7220 0.0066 27 1 3.4045 -2.2366 2.0079 28 1 7.2738 -3.6783 0.9338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241081237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:19 Heat of formation + Delta-G solvation = -70.866452 kcal Electronic energy + Delta-G solvation = -21102.175190 eV Core-core repulsion = 17282.532449 eV Total energy + Delta-G solvation = -3819.642741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09863 -48.73448 -48.06475 -39.37321 -37.87195 -34.35203 -32.69099 -31.59880 -29.60480 -29.06779 -26.39313 -24.05563 -22.67874 -22.00497 -21.25209 -17.91109 -17.88070 -17.34604 -17.13037 -16.31817 -15.92956 -15.57726 -15.19301 -15.13572 -14.99885 -14.49110 -14.33310 -14.27297 -13.82387 -13.20025 -12.98398 -12.71259 -12.05008 -11.95824 -11.67824 -11.56557 -11.46030 -11.11903 -10.78230 -10.43157 -10.07137 -9.77203 -9.40364 -8.78782 -8.28979 -7.90792 -7.62979 -6.80042 -4.96525 1.06614 1.16316 2.27144 2.74169 2.90286 2.95368 3.01088 3.59044 3.66384 3.92652 4.33826 4.41594 4.70526 4.91379 5.13529 5.15019 5.49100 5.70038 5.80423 5.88378 6.04800 6.14054 6.32289 6.35191 6.49697 6.62284 6.75267 6.88333 7.06979 7.40975 7.77480 8.10781 8.37378 8.96774 9.55966 9.84047 Molecular weight = 280.05amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.008393 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.423354 B = 3335.243302 C = 4696.336871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.398 4.398 8 H 0.097 0.903 9 C 0.227 3.773 10 N -0.449 5.449 11 C 0.098 3.902 12 C -0.110 4.110 13 N -0.397 5.397 14 C -0.055 4.055 15 C 0.060 3.940 16 C -0.119 4.119 17 C 0.114 3.886 18 F -0.133 7.133 19 C -0.185 4.185 20 C 0.089 3.911 21 F -0.129 7.129 22 C 0.064 3.936 23 F -0.119 7.119 24 H 0.282 0.718 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.156 0.844 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.322 -0.958 1.752 6.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.164 4.164 3 Si 0.733 3.267 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.427 4.427 8 H 0.115 0.885 9 C 0.103 3.897 10 N -0.165 5.165 11 C -0.075 4.075 12 C -0.274 4.274 13 N -0.109 5.109 14 C -0.200 4.200 15 C 0.057 3.943 16 C -0.139 4.139 17 C 0.095 3.905 18 F -0.112 7.112 19 C -0.205 4.205 20 C 0.069 3.931 21 F -0.108 7.108 22 C 0.042 3.958 23 F -0.097 7.097 24 H 0.094 0.906 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.174 0.826 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.155 -0.789 1.717 6.438 hybrid contribution 0.318 0.466 -0.225 0.607 sum 6.472 -0.323 1.491 6.650 Atomic orbital electron populations 1.70026 1.07563 1.29116 1.24983 1.26226 0.95054 1.01772 0.93342 0.86181 0.81194 0.80164 0.79188 1.17644 1.19241 1.19195 1.19859 0.95164 0.89081 1.38612 0.88464 1.19149 0.88986 0.91842 0.89727 1.69564 1.07278 1.24780 1.14862 1.23626 1.00133 0.90236 0.93517 1.22611 0.90855 0.98156 1.15748 1.67681 1.08549 1.28902 1.05768 1.19628 0.90878 0.91134 1.18335 1.18031 0.92295 0.92152 0.91808 1.21295 0.92652 1.01039 0.98939 1.17055 0.90924 0.93249 0.89288 1.91504 1.85742 1.72723 1.61193 1.20707 1.01404 1.00395 0.98023 1.17065 0.86454 0.95492 0.94084 1.91502 1.73279 1.72523 1.73481 1.17826 0.89019 0.96743 0.92196 1.91516 1.85882 1.71796 1.60504 0.90628 0.84752 0.84952 0.82594 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.70 11.53 55.56 0.64 -16.06 15 2 C 0.06 1.47 5.49 -17.32 -0.10 1.38 15 3 Si 0.91 16.75 29.56 -169.99 -5.02 11.72 15 4 H -0.25 -4.59 7.11 56.52 0.40 -4.19 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 7 C -0.40 -9.51 7.87 -37.91 -0.30 -9.81 15 8 H 0.10 2.17 5.79 -52.49 -0.30 1.87 15 9 C 0.23 5.74 6.52 -84.55 -0.55 5.18 15 10 N -0.45 -11.44 8.10 -10.72 -0.09 -11.53 15 11 C 0.10 2.18 11.22 -17.30 -0.19 1.99 15 12 C -0.11 -2.42 11.22 -17.13 -0.19 -2.61 15 13 N -0.40 -9.49 10.10 -8.98 -0.09 -9.58 15 14 C -0.05 -1.31 6.05 -82.11 -0.50 -1.81 15 15 C 0.06 1.25 5.01 -104.86 -0.53 0.73 15 16 C -0.12 -2.19 7.71 -39.09 -0.30 -2.49 15 17 C 0.11 1.83 7.29 -39.49 -0.29 1.55 15 18 F -0.13 -2.03 17.26 2.25 0.04 -2.00 15 19 C -0.19 -2.76 10.00 -39.34 -0.39 -3.15 15 20 C 0.09 1.52 7.30 -39.43 -0.29 1.23 15 21 F -0.13 -2.14 17.18 2.25 0.04 -2.10 15 22 C 0.06 1.27 7.27 -38.90 -0.28 0.98 15 23 F -0.12 -2.56 16.49 2.25 0.04 -2.52 15 24 H 0.28 6.03 8.29 -40.82 -0.34 5.69 15 25 H 0.14 2.52 8.06 -52.49 -0.42 2.09 15 26 H 0.13 2.46 8.06 -52.48 -0.42 2.04 15 27 H 0.16 2.85 7.53 -52.49 -0.39 2.46 15 28 H 0.15 1.76 8.06 -52.49 -0.42 1.34 15 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -27.03 270.26 -5.38 -32.42 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -1.10 Total: 2.40 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -3.91 Total: -6.83 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.46 Total: -37.17 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.02 Total: 11.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.03 -5.38 -32.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241081237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.451 kcal (2) G-P(sol) polarization free energy of solvation -27.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds