Wall clock time and date at job start Tue Mar 31 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86798 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46929 * 299.99501 * 3 2 1 6 6 H 1.48501 * 109.47407 * 59.99681 * 3 2 1 7 7 C 1.40158 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 180.02562 * 7 2 1 9 9 C 1.40767 * 120.00085 * 0.02562 * 7 2 1 10 10 N 1.33983 * 120.29050 * 9.09721 * 9 7 2 11 11 C 1.31599 * 119.90212 * 179.97438 * 10 9 7 12 12 C 1.39194 * 120.51504 * 359.97438 * 11 10 9 13 13 N 1.31997 * 120.59533 * 0.02562 * 12 11 10 14 14 C 1.32898 * 120.07788 * 359.97438 * 13 12 11 15 15 C 1.47708 * 120.25495 * 179.97438 * 14 13 12 16 16 C 1.39753 * 120.14378 * 232.82555 * 15 14 13 17 17 C 1.38047 * 119.88744 * 179.97438 * 16 15 14 18 18 F 1.35099 * 119.90242 * 179.97438 * 17 16 15 19 19 C 1.38677 * 120.18996 * 0.02562 * 17 16 15 20 20 C 1.38446 * 120.29863 * 359.97438 * 19 17 16 21 21 F 1.35097 * 119.94789 * 179.97438 * 20 19 17 22 22 C 1.38445 * 120.10693 * 359.74923 * 20 19 17 23 23 F 1.35102 * 120.09596 * 180.27694 * 22 20 19 24 24 H 0.97002 * 120.00099 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.74446 * 179.72826 * 11 10 9 26 26 H 1.08004 * 119.70715 * 179.97438 * 12 11 10 27 27 H 1.07998 * 120.05606 * 359.95801 * 16 15 14 28 28 H 1.07996 * 119.84931 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0077 -1.2138 0.0005 8 1 3.0876 -1.2139 0.0010 9 6 1.3039 -2.4329 0.0005 10 7 -0.0233 -2.4470 -0.1829 11 6 -0.6735 -3.5911 -0.1820 12 6 0.0067 -4.7906 0.0078 13 7 1.3140 -4.7999 0.1904 14 6 1.9942 -3.6582 0.1938 15 6 3.4570 -3.6641 0.3983 16 6 4.0303 -2.8627 1.3894 17 6 5.3981 -2.8727 1.5763 18 9 5.9526 -2.0978 2.5339 19 6 6.2045 -3.6751 0.7831 20 6 5.6448 -4.4719 -0.2010 21 9 6.4370 -5.2504 -0.9700 22 6 4.2740 -4.4758 -0.3953 23 9 3.7276 -5.2577 -1.3520 24 1 -0.4850 0.8401 0.0004 25 1 -1.7439 -3.5992 -0.3257 26 1 -0.5400 -5.7220 0.0066 27 1 3.4045 -2.2366 2.0079 28 1 7.2738 -3.6783 0.9338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241081237.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:19 Heat of formation + Delta-G solvation = -85.613626 kcal Electronic energy + Delta-G solvation = -21102.814675 eV Core-core repulsion = 17282.532449 eV Total energy + Delta-G solvation = -3820.282226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.51872 -50.01372 -49.56964 -41.07273 -39.34947 -36.07806 -34.36555 -33.26385 -31.03300 -30.65222 -28.12844 -25.63359 -24.25347 -23.60164 -22.82876 -19.64636 -19.30277 -18.78808 -18.61644 -17.93802 -17.38797 -16.99703 -16.80934 -16.56726 -16.48615 -15.98828 -15.85910 -15.65317 -15.26954 -14.91989 -14.57070 -14.22674 -13.65791 -13.36678 -13.30050 -13.07610 -12.98556 -12.56761 -12.29405 -11.97030 -11.76612 -11.57367 -11.11595 -10.31010 -9.75236 -9.59121 -9.34443 -8.50816 -6.74764 -0.36003 -0.24883 0.57556 1.03461 1.39581 1.50287 1.55376 2.13988 2.15601 2.53617 2.69034 2.97152 3.30053 3.42335 3.67835 3.77010 3.81344 4.10012 4.25792 4.38833 4.49073 4.67298 4.82299 4.85645 4.96411 5.00726 5.07875 5.21065 5.64772 5.70011 6.02442 6.36411 6.61178 7.20580 7.78891 8.18825 Molecular weight = 280.05amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.008393 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.423354 B = 3335.243302 C = 4696.336871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.026 3.974 3 Si 0.982 3.018 4 H -0.247 1.247 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.105 0.895 9 C 0.197 3.803 10 N -0.484 5.484 11 C 0.088 3.912 12 C -0.116 4.116 13 N -0.419 5.419 14 C -0.066 4.066 15 C 0.034 3.966 16 C -0.121 4.121 17 C 0.129 3.871 18 F -0.122 7.122 19 C -0.154 4.154 20 C 0.097 3.903 21 F -0.124 7.124 22 C 0.042 3.958 23 F -0.136 7.136 24 H 0.290 0.710 25 H 0.166 0.834 26 H 0.164 0.836 27 H 0.150 0.850 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 -0.273 2.291 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.170 1.170 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.446 4.446 8 H 0.123 0.877 9 C 0.073 3.927 10 N -0.200 5.200 11 C -0.083 4.083 12 C -0.279 4.279 13 N -0.131 5.131 14 C -0.211 4.211 15 C 0.032 3.968 16 C -0.141 4.141 17 C 0.109 3.891 18 F -0.101 7.101 19 C -0.173 4.173 20 C 0.077 3.923 21 F -0.102 7.102 22 C 0.021 3.979 23 F -0.115 7.115 24 H 0.101 0.899 25 H 0.183 0.817 26 H 0.181 0.819 27 H 0.167 0.833 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.279 -0.135 2.259 8.582 hybrid contribution -0.315 0.163 -0.359 0.505 sum 7.964 0.028 1.900 8.188 Atomic orbital electron populations 1.70090 1.09142 1.30492 1.25739 1.27110 0.95738 1.04796 0.92326 0.85132 0.79941 0.75525 0.79354 1.16953 1.18928 1.18337 1.20147 0.95672 0.89498 1.39269 0.87677 1.19581 0.89441 0.93065 0.90610 1.69523 1.07885 1.26334 1.16300 1.24134 1.01580 0.89777 0.92833 1.23144 0.90656 0.99402 1.14660 1.67751 1.09455 1.29232 1.06688 1.20010 0.92534 0.90767 1.17780 1.17983 0.91124 0.94122 0.93618 1.21224 0.93881 1.00546 0.98432 1.16913 0.89962 0.92982 0.89210 1.91541 1.85363 1.72416 1.60764 1.21037 1.03220 0.97603 0.95472 1.17015 0.85245 0.95636 0.94412 1.91522 1.72790 1.72441 1.73460 1.18067 0.90328 0.97102 0.92384 1.91460 1.86403 1.72360 1.61259 0.89878 0.81703 0.81860 0.83268 0.78986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.77 11.53 21.86 0.25 -35.52 15 2 C 0.03 1.17 5.49 85.33 0.47 1.64 15 3 Si 0.98 33.79 29.56 68.60 2.03 35.82 15 4 H -0.25 -8.12 7.11 99.48 0.71 -7.41 15 5 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 6 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 7 C -0.42 -20.27 7.87 23.36 0.18 -20.09 15 8 H 0.11 4.74 5.79 -2.91 -0.02 4.72 15 9 C 0.20 10.26 6.52 40.36 0.26 10.52 15 10 N -0.48 -25.37 8.10 -187.84 -1.52 -26.89 15 11 C 0.09 4.00 11.22 84.96 0.95 4.96 15 12 C -0.12 -5.13 11.22 84.90 0.95 -4.18 15 13 N -0.42 -20.45 10.10 -182.32 -1.84 -22.29 15 14 C -0.07 -3.25 6.05 42.41 0.26 -2.99 15 15 C 0.03 1.44 5.01 -20.02 -0.10 1.34 15 16 C -0.12 -4.34 7.71 22.59 0.17 -4.16 15 17 C 0.13 3.76 7.29 22.33 0.16 3.92 15 18 F -0.12 -3.30 17.26 44.97 0.78 -2.53 15 19 C -0.15 -3.96 10.00 22.42 0.22 -3.74 15 20 C 0.10 3.08 7.30 22.37 0.16 3.24 15 21 F -0.12 -3.77 17.18 44.97 0.77 -2.99 15 22 C 0.04 1.68 7.27 22.71 0.17 1.84 15 23 F -0.14 -5.97 16.49 44.97 0.74 -5.23 15 24 H 0.29 12.56 8.29 -92.71 -0.77 11.79 15 25 H 0.17 6.14 8.06 -2.91 -0.02 6.12 15 26 H 0.16 5.96 8.06 -2.91 -0.02 5.93 15 27 H 0.15 5.50 7.53 -2.91 -0.02 5.47 15 28 H 0.19 3.37 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -59.69 270.26 6.32 -53.37 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.24 Total: 13.96 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 3.87 Total: -7.70 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -3.11 Total: -84.70 kcal Atomic # 9 Polarization: -13.04 SS G_CDS: 2.29 Total: -10.75 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Total: -59.69 6.32 -53.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241081237.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.243 kcal (2) G-P(sol) polarization free energy of solvation -59.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds