Wall clock time and date at job start Tue Mar 31 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38240 * 120.00012 * 2 1 4 4 C 1.38228 * 119.99676 * 179.97438 * 3 2 1 5 5 C 1.38241 * 120.00383 * 0.25859 * 4 3 2 6 6 S 1.76201 * 120.00184 * 179.72268 * 5 4 3 7 7 O 1.42093 * 106.40427 * 203.54081 * 6 5 4 8 8 O 1.42108 * 106.40043 * 336.45876 * 6 5 4 9 9 N 1.65600 * 107.21623 * 89.99717 * 6 5 4 10 10 C 1.36939 * 119.99456 * 90.00241 * 9 6 5 11 11 H 1.07997 * 120.00100 * 7.23874 * 10 9 6 12 12 C 1.38819 * 119.99503 * 187.23403 * 10 9 6 13 13 N 1.31614 * 120.00022 * 25.60680 * 12 10 9 14 14 Si 1.86797 * 119.99701 * 205.60380 * 12 10 9 15 15 H 1.48506 * 109.47333 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47317 * 120.00265 * 14 12 10 17 17 H 1.48500 * 109.47247 * 240.00011 * 14 12 10 18 18 C 1.46501 * 120.00274 * 269.99558 * 9 6 5 19 19 C 1.47201 * 109.46419 * 93.33861 * 18 9 6 20 20 N 5.07135 * 127.24054 * 61.23540 * 2 1 3 21 21 C 1.38235 * 119.99752 * 359.48445 * 5 4 3 22 22 C 1.38233 * 119.99800 * 0.49080 * 21 5 4 23 23 H 1.08998 * 109.46878 * 90.00138 * 1 2 3 24 24 H 1.08995 * 109.47370 * 210.00105 * 1 2 3 25 25 H 1.09001 * 109.47013 * 330.00406 * 1 2 3 26 26 H 1.08001 * 119.99813 * 359.97438 * 3 2 1 27 27 H 1.08009 * 119.99703 * 179.97438 * 4 3 2 28 28 H 0.96998 * 119.99870 * 179.97438 * 13 12 10 29 29 H 1.09001 * 109.47255 * 213.33575 * 18 9 6 30 30 H 1.09000 * 109.47169 * 333.34149 * 18 9 6 31 31 H 1.07999 * 120.00119 * 180.25348 * 21 5 4 32 32 H 1.07999 * 119.99904 * 179.76270 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 -0.0043 6 16 6.0337 -0.0001 -0.0110 7 8 6.4329 -1.2487 -0.5593 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5689 10 6 6.7350 -1.1902 2.2198 11 1 6.6876 -2.1207 1.6737 12 6 7.0040 -1.1974 3.5817 13 7 6.5864 -0.2063 4.3403 14 14 7.9587 -2.6140 4.3375 15 1 8.3120 -3.5936 3.2788 16 1 9.2004 -2.0950 4.9654 17 1 7.1232 -3.2794 5.3693 18 6 6.7495 1.2644 2.2701 19 6 5.5221 1.6476 2.9867 20 7 4.5760 1.9428 3.5391 21 6 3.5806 -1.1972 0.0010 22 6 2.1982 -1.1972 0.0010 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6582 2.1325 -0.0004 27 1 4.1206 2.1325 0.0001 28 1 6.7740 -0.2116 5.2919 29 1 7.5655 1.1484 2.9834 30 1 7.0056 2.0396 1.5479 31 1 4.1205 -2.1325 0.0014 32 1 1.6582 -2.1324 0.0013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000304825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:40 Heat of formation + Delta-G solvation = -26.943276 kcal Electronic energy + Delta-G solvation = -19953.321568 eV Core-core repulsion = 16812.884170 eV Total energy + Delta-G solvation = -3140.437397 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.14360 -38.44151 -37.87649 -36.47943 -36.25997 -33.83371 -33.45513 -31.94863 -29.20851 -28.05040 -25.86123 -23.75713 -22.70865 -20.40753 -19.83535 -18.99377 -18.36491 -17.75312 -16.78317 -16.32113 -16.24937 -15.90209 -15.31702 -15.22470 -14.80856 -14.66592 -14.44846 -14.09990 -13.55945 -13.29650 -13.21556 -13.14641 -13.08735 -12.95117 -12.85516 -12.76577 -12.60963 -12.15106 -12.05512 -12.03548 -11.81602 -11.62889 -11.24293 -10.21891 -9.96703 -9.90728 -8.44659 -5.87321 -0.27304 0.03724 0.37806 1.51973 1.59186 1.71737 1.95385 2.32389 2.40885 2.53556 2.79530 2.90504 3.18695 3.60529 3.67144 3.88794 3.89790 3.99998 4.38972 4.39586 4.48189 4.69990 4.73333 4.79454 4.85352 5.05271 5.08954 5.20146 5.28404 5.29777 5.47221 5.49976 5.99644 6.32478 6.74670 7.11057 7.15866 8.55572 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018364 B = 0.007229 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.370790 B = 3872.399963 C = 3991.111428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.154 4.154 4 C -0.043 4.043 5 C -0.692 4.692 6 S 2.578 3.422 7 O -0.998 6.998 8 O -1.002 7.002 9 N -0.813 5.813 10 C -0.282 4.282 11 H 0.120 0.880 12 C 0.007 3.993 13 N -0.865 5.865 14 Si 0.990 3.010 15 H -0.260 1.260 16 H -0.266 1.266 17 H -0.286 1.286 18 C 0.224 3.776 19 C 0.254 3.746 20 N -0.506 5.506 21 C -0.040 4.040 22 C -0.152 4.152 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.127 0.873 28 H 0.281 0.719 29 H 0.139 0.861 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 -0.226 -3.823 6.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.172 4.172 4 C -0.063 4.063 5 C -0.775 4.775 6 S 2.678 3.322 7 O -0.988 6.988 8 O -0.992 6.992 9 N -0.637 5.637 10 C -0.425 4.425 11 H 0.137 0.863 12 C -0.202 4.202 13 N -0.504 5.504 14 Si 0.813 3.187 15 H -0.183 1.183 16 H -0.191 1.191 17 H -0.212 1.212 18 C 0.094 3.906 19 C -0.065 4.065 20 N -0.187 5.187 21 C -0.060 4.060 22 C -0.170 4.170 23 H 0.111 0.889 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.003 0.370 -3.794 7.111 hybrid contribution -0.053 -0.667 0.720 0.984 sum -6.056 -0.298 -3.074 6.798 Atomic orbital electron populations 1.20929 0.87989 1.04122 1.03896 1.20596 0.98254 0.92657 0.93752 1.21447 0.93842 0.99187 1.02757 1.20973 0.95558 0.96384 0.93352 1.31924 1.30855 0.99280 1.15418 1.08615 0.74696 0.72222 0.76630 1.93354 1.82284 1.44198 1.78942 1.93355 1.82699 1.44031 1.79142 1.54915 1.67871 1.09577 1.31356 1.20195 1.42194 0.86653 0.93485 0.86260 1.26124 0.97680 1.00742 0.95643 1.69997 1.39968 1.33506 1.06948 0.84907 0.78068 0.77761 0.77967 1.18346 1.19121 1.21203 1.19201 0.90049 0.85650 0.95668 1.29813 0.94598 0.90188 0.91879 1.80782 1.13414 1.12684 1.11810 1.21048 0.95537 0.96644 0.92729 1.21490 0.93731 0.99219 1.02607 0.88941 0.90056 0.90385 0.83572 0.85487 0.90885 0.84389 0.85625 0.85095 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 10.01 71.24 0.71 -1.51 16 2 C -0.05 -1.54 5.88 -19.86 -0.12 -1.66 16 3 C -0.15 -5.00 9.70 22.27 0.22 -4.78 16 4 C -0.04 -1.67 9.52 22.27 0.21 -1.46 16 5 C -0.69 -28.69 5.97 22.27 0.13 -28.56 16 6 S 2.58 113.59 5.65 -56.49 -0.32 113.27 16 7 O -1.00 -48.00 16.06 -128.00 -2.06 -50.06 16 8 O -1.00 -45.04 15.85 -128.00 -2.03 -47.07 16 9 N -0.81 -35.77 2.88 -352.50 -1.02 -36.79 16 10 C -0.28 -12.92 9.47 84.03 0.80 -12.13 16 11 H 0.12 5.50 7.22 -2.91 -0.02 5.48 16 12 C 0.01 0.29 4.90 84.86 0.42 0.70 16 13 N -0.86 -39.57 8.99 21.65 0.19 -39.38 16 14 Si 0.99 35.82 29.62 68.60 2.03 37.85 16 15 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 16 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 17 H -0.29 -10.55 7.11 99.48 0.71 -9.84 16 18 C 0.22 8.97 5.45 84.57 0.46 9.44 16 19 C 0.25 11.24 13.28 89.46 1.19 12.43 16 20 N -0.51 -23.98 18.53 19.99 0.37 -23.61 16 21 C -0.04 -1.55 9.52 22.27 0.21 -1.34 16 22 C -0.15 -4.84 9.70 22.27 0.22 -4.62 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 25 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 26 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 27 H 0.13 4.73 7.62 -2.91 -0.02 4.71 16 28 H 0.28 12.29 8.31 -92.71 -0.77 11.52 16 29 H 0.14 5.37 6.47 -2.39 -0.02 5.36 16 30 H 0.13 4.34 6.95 -2.39 -0.02 4.33 16 31 H 0.13 4.93 7.62 -2.91 -0.02 4.91 16 32 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -60.95 296.96 2.77 -58.18 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.15 Total: 21.09 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 4.45 Total: -33.49 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -0.45 Total: -99.77 kcal Atomic # 8 Polarization: -93.04 SS G_CDS: -4.09 Total: -97.12 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 113.59 SS G_CDS: -0.32 Total: 113.27 kcal Total: -60.95 2.77 -58.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000304825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.234 kcal (2) G-P(sol) polarization free energy of solvation -60.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds