Wall clock time and date at job start Tue Mar 31 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86806 * 119.99650 * 2 1 4 4 H 1.48499 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47046 * 299.99798 * 3 2 1 6 6 H 1.48498 * 109.47408 * 59.99477 * 3 2 1 7 7 C 1.40208 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.40801 * 119.99488 * 359.97438 * 7 2 1 10 10 O 1.21998 * 120.00725 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99761 * 179.97438 * 9 7 2 12 12 N 1.40099 * 120.00256 * 180.02562 * 11 9 7 13 13 C 1.30465 * 120.00089 * 180.02562 * 12 11 9 14 14 N 1.37008 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99816 * 179.97438 * 13 12 11 16 16 S 1.81399 * 109.47287 * 0.02562 * 15 13 12 17 17 C 1.76200 * 102.99971 * 179.97438 * 16 15 13 18 18 C 1.39208 * 119.70805 * 179.97438 * 17 16 15 19 19 C 1.38274 * 119.08752 * 179.97438 * 18 17 16 20 20 C 1.38909 * 118.51576 * 0.02562 * 19 18 17 21 21 C 1.38031 * 119.33836 * 0.27638 * 20 19 18 22 22 N 1.31960 * 120.86241 * 359.44535 * 21 20 19 23 23 H 0.97002 * 120.00570 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00103 * 0.02562 * 11 9 7 25 25 H 0.97002 * 120.00355 * 180.02562 * 14 13 12 26 26 H 0.97005 * 120.00119 * 359.97438 * 14 13 12 27 27 H 1.09003 * 109.47198 * 240.00054 * 15 13 12 28 28 H 1.09002 * 109.46778 * 120.00224 * 15 13 12 29 29 H 1.07997 * 120.45449 * 0.02633 * 18 17 16 30 30 H 1.08004 * 120.73533 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.32660 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.56637 * 179.72239 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.6999 1.3466 0.0006 5 1 1.8811 2.3965 -1.2126 6 1 1.8811 2.3966 1.2124 7 6 2.0071 -1.2142 0.0005 8 1 3.0871 -1.2141 0.0010 9 6 1.3031 -2.4335 0.0016 10 8 0.0832 -2.4337 0.0016 11 7 1.9771 -3.6008 0.0016 12 7 1.2767 -4.8141 0.0022 13 6 1.9291 -5.9439 0.0027 14 7 3.2992 -5.9439 0.0032 15 6 1.1757 -7.2491 0.0038 16 16 -0.6078 -6.9177 0.0036 17 6 -1.3111 -8.5333 0.0042 18 6 -2.6951 -8.6832 0.0047 19 6 -3.2332 -9.9569 0.0047 20 6 -2.3670 -11.0428 0.0048 21 6 -1.0046 -10.8212 0.0106 22 7 -0.5183 -9.5944 0.0052 23 1 -0.4851 0.8400 -0.0004 24 1 2.9471 -3.6007 0.0013 25 1 3.7843 -6.7839 0.0032 26 1 3.7842 -5.1038 0.0028 27 1 1.4394 -7.8200 0.8941 28 1 1.4387 -7.8212 -0.8859 29 1 -3.3396 -7.8166 0.0043 30 1 -4.3032 -10.1041 0.0047 31 1 -2.7556 -12.0505 0.0052 32 1 -0.3277 -11.6628 0.0152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004052266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:24 Heat of formation + Delta-G solvation = 48.997910 kcal Electronic energy + Delta-G solvation = -18066.254064 eV Core-core repulsion = 14961.402475 eV Total energy + Delta-G solvation = -3104.851589 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90846 -37.97264 -36.33748 -32.92966 -32.60634 -32.06268 -31.28392 -30.29616 -28.26967 -25.97908 -23.73504 -23.55026 -20.73521 -19.21729 -18.34572 -17.83044 -16.60001 -16.34455 -16.25327 -15.91667 -15.32363 -14.74369 -14.71763 -13.97631 -13.95593 -13.51329 -13.32764 -12.73331 -12.72748 -12.44473 -11.83688 -11.46039 -11.27892 -11.01874 -10.53296 -10.31989 -10.18311 -10.12733 -9.75769 -9.69273 -9.44628 -9.32261 -8.78591 -7.55662 -7.32596 -6.77675 -6.25985 -4.79541 0.93990 1.16646 1.54350 2.44210 2.97813 3.11879 3.16964 3.21756 3.63720 3.86882 4.09691 4.19590 4.47040 4.57922 4.71441 4.98928 5.05898 5.17585 5.29294 5.36722 5.60927 5.69126 5.88603 5.95387 6.07128 6.49700 6.60542 7.32306 7.43019 7.69173 7.89218 8.04923 8.19621 8.89815 9.06418 9.53995 10.53630 10.87521 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.003362 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.817822 B = 8325.991895 C = 9094.664928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.089 3.911 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.565 3.435 10 O -0.555 6.555 11 N -0.597 5.597 12 N -0.273 5.273 13 C 0.272 3.728 14 N -0.883 5.883 15 C -0.039 4.039 16 S 0.042 5.958 17 C 0.099 3.901 18 C -0.154 4.154 19 C -0.059 4.059 20 C -0.193 4.193 21 C 0.112 3.888 22 N -0.498 5.498 23 H 0.271 0.729 24 H 0.359 0.641 25 H 0.392 0.608 26 H 0.395 0.605 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -19.487 0.018 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.373 3.627 10 O -0.434 6.434 11 N -0.344 5.344 12 N -0.095 5.095 13 C -0.011 4.011 14 N -0.440 5.440 15 C -0.191 4.191 16 S 0.284 5.716 17 C -0.149 4.149 18 C -0.180 4.180 19 C -0.086 4.086 20 C -0.217 4.217 21 C -0.049 4.049 22 N -0.212 5.212 23 H 0.082 0.918 24 H 0.194 0.806 25 H 0.220 0.780 26 H 0.226 0.774 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.743 -17.529 0.016 17.544 hybrid contribution 2.002 -0.934 0.000 2.210 sum 1.259 -18.463 0.016 18.506 Atomic orbital electron populations 1.70032 1.07244 1.27573 1.32661 1.25733 0.94615 1.00480 0.92530 0.86232 0.80413 0.81248 0.78367 1.18689 1.19966 1.19972 1.19759 0.94194 0.89822 1.54098 0.91483 1.16706 0.87773 0.80329 0.77933 1.90714 1.13447 1.85376 1.53879 1.47283 1.06406 1.01477 1.79210 1.75253 1.24060 0.90585 1.19566 1.21937 0.82631 0.93420 1.03097 1.42207 1.04260 1.10681 1.86854 1.21864 0.95388 0.94934 1.06869 1.87219 0.99900 0.95241 1.89231 1.24071 0.93855 0.99476 0.97516 1.21682 0.94354 0.98746 1.03265 1.21482 1.00355 0.92050 0.94728 1.21990 0.94810 0.99909 1.04994 1.22689 0.93805 0.94176 0.94192 1.68187 1.38834 0.98816 1.15385 0.91773 0.80644 0.78033 0.77441 0.87591 0.87597 0.84170 0.84628 0.85033 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -22.52 11.71 55.56 0.65 -21.87 16 2 C 0.09 2.49 5.50 -17.34 -0.10 2.40 16 3 Si 0.91 19.92 29.56 -169.99 -5.02 14.89 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -15.46 9.27 -37.87 -0.35 -15.81 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.57 17.02 7.66 -15.29 -0.12 16.90 16 10 O -0.55 -19.13 15.20 4.92 0.07 -19.06 16 11 N -0.60 -14.73 6.22 28.95 0.18 -14.55 16 12 N -0.27 -6.30 9.74 33.07 0.32 -5.97 16 13 C 0.27 4.71 7.97 -153.62 -1.22 3.49 16 14 N -0.88 -11.66 8.93 33.01 0.29 -11.37 16 15 C -0.04 -0.56 5.71 36.01 0.21 -0.36 16 16 S 0.04 0.71 20.92 -107.50 -2.25 -1.54 16 17 C 0.10 1.40 7.00 -16.92 -0.12 1.29 16 18 C -0.15 -1.88 9.84 -39.21 -0.39 -2.26 16 19 C -0.06 -0.56 10.16 -39.32 -0.40 -0.96 16 20 C -0.19 -1.70 10.11 -39.41 -0.40 -2.09 16 21 C 0.11 1.13 11.17 -17.57 -0.20 0.93 16 22 N -0.50 -6.52 9.43 -12.10 -0.11 -6.63 16 23 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 24 H 0.36 7.46 6.55 -182.60 -1.20 6.26 16 25 H 0.39 3.75 8.86 -40.82 -0.36 3.39 16 26 H 0.40 5.27 6.68 -40.82 -0.27 4.99 16 27 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 28 H 0.11 1.36 8.14 -51.92 -0.42 0.93 16 29 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -38.28 304.16 -8.28 -46.55 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.91 Total: 11.43 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -3.08 Total: 3.53 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 1.33 Total: -60.39 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.07 Total: -19.06 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.25 Total: -1.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -38.28 -8.28 -46.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004052266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.552 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds