Wall clock time and date at job start Tue Mar 31 2020 01:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30598 * 1 3 3 Si 1.86806 * 119.99650 * 2 1 4 4 H 1.48499 * 109.47243 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47046 * 299.99798 * 3 2 1 6 6 H 1.48498 * 109.47408 * 59.99477 * 3 2 1 7 7 C 1.40208 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.40801 * 119.99488 * 359.97438 * 7 2 1 10 10 O 1.21998 * 120.00725 * 0.02562 * 9 7 2 11 11 N 1.34782 * 119.99761 * 179.97438 * 9 7 2 12 12 N 1.40099 * 120.00256 * 180.02562 * 11 9 7 13 13 C 1.30465 * 120.00089 * 180.02562 * 12 11 9 14 14 N 1.37008 * 120.00211 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99816 * 179.97438 * 13 12 11 16 16 S 1.81399 * 109.47287 * 0.02562 * 15 13 12 17 17 C 1.76200 * 102.99971 * 179.97438 * 16 15 13 18 18 C 1.39208 * 119.70805 * 179.97438 * 17 16 15 19 19 C 1.38274 * 119.08752 * 179.97438 * 18 17 16 20 20 C 1.38909 * 118.51576 * 0.02562 * 19 18 17 21 21 C 1.38031 * 119.33836 * 0.27638 * 20 19 18 22 22 N 1.31960 * 120.86241 * 359.44535 * 21 20 19 23 23 H 0.97002 * 120.00570 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00103 * 0.02562 * 11 9 7 25 25 H 0.97002 * 120.00355 * 180.02562 * 14 13 12 26 26 H 0.97005 * 120.00119 * 359.97438 * 14 13 12 27 27 H 1.09003 * 109.47198 * 240.00054 * 15 13 12 28 28 H 1.09002 * 109.46778 * 120.00224 * 15 13 12 29 29 H 1.07997 * 120.45449 * 0.02633 * 18 17 16 30 30 H 1.08004 * 120.73533 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.32660 * 179.97438 * 20 19 18 32 32 H 1.08000 * 119.56637 * 179.72239 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.6999 1.3466 0.0006 5 1 1.8811 2.3965 -1.2126 6 1 1.8811 2.3966 1.2124 7 6 2.0071 -1.2142 0.0005 8 1 3.0871 -1.2141 0.0010 9 6 1.3031 -2.4335 0.0016 10 8 0.0832 -2.4337 0.0016 11 7 1.9771 -3.6008 0.0016 12 7 1.2767 -4.8141 0.0022 13 6 1.9291 -5.9439 0.0027 14 7 3.2992 -5.9439 0.0032 15 6 1.1757 -7.2491 0.0038 16 16 -0.6078 -6.9177 0.0036 17 6 -1.3111 -8.5333 0.0042 18 6 -2.6951 -8.6832 0.0047 19 6 -3.2332 -9.9569 0.0047 20 6 -2.3670 -11.0428 0.0048 21 6 -1.0046 -10.8212 0.0106 22 7 -0.5183 -9.5944 0.0052 23 1 -0.4851 0.8400 -0.0004 24 1 2.9471 -3.6007 0.0013 25 1 3.7843 -6.7839 0.0032 26 1 3.7842 -5.1038 0.0028 27 1 1.4394 -7.8200 0.8941 28 1 1.4387 -7.8212 -0.8859 29 1 -3.3396 -7.8166 0.0043 30 1 -4.3032 -10.1041 0.0047 31 1 -2.7556 -12.0505 0.0052 32 1 -0.3277 -11.6628 0.0152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004052266.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:23 Heat of formation + Delta-G solvation = 19.013168 kcal Electronic energy + Delta-G solvation = -18067.554300 eV Core-core repulsion = 14961.402475 eV Total energy + Delta-G solvation = -3106.151825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76326 -39.74051 -38.22380 -34.87107 -34.08282 -33.44654 -32.12834 -31.69446 -29.99940 -27.93106 -24.61549 -24.38696 -22.57295 -20.88837 -19.95060 -18.92329 -18.37562 -17.73324 -17.26544 -17.19836 -16.81449 -15.95458 -15.79938 -15.68331 -15.04698 -14.91394 -14.61489 -14.46245 -14.22352 -13.69615 -13.16530 -13.05869 -12.70043 -12.69652 -12.66917 -11.96977 -11.48348 -11.09632 -10.97031 -10.94611 -10.76990 -10.66228 -10.49981 -9.84175 -8.54749 -8.51257 -8.34866 -6.99093 0.08225 0.35338 0.40207 1.33189 1.37033 1.39864 1.55546 1.59617 2.15918 2.45597 2.50906 2.79884 2.80063 3.66340 3.75870 4.03658 4.12734 4.15699 4.20229 4.24805 4.38401 4.47746 4.83026 5.12612 5.13446 5.24642 5.29341 5.74297 5.88754 6.03892 6.12740 6.75249 6.82105 6.89236 7.26577 7.69253 8.51573 8.75779 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.035714 B = 0.003362 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.817822 B = 8325.991895 C = 9094.664928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.029 3.971 3 Si 1.009 2.991 4 H -0.244 1.244 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.549 3.451 10 O -0.618 6.618 11 N -0.597 5.597 12 N -0.347 5.347 13 C 0.309 3.691 14 N -0.861 5.861 15 C -0.021 4.021 16 S -0.050 6.050 17 C 0.087 3.913 18 C -0.171 4.171 19 C -0.057 4.057 20 C -0.176 4.176 21 C 0.101 3.899 22 N -0.514 5.514 23 H 0.279 0.721 24 H 0.374 0.626 25 H 0.415 0.585 26 H 0.398 0.602 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.580 -21.803 0.021 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.189 4.189 3 Si 0.827 3.173 4 H -0.166 1.166 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.603 4.603 8 H 0.109 0.891 9 C 0.357 3.643 10 O -0.503 6.503 11 N -0.343 5.343 12 N -0.170 5.170 13 C 0.025 3.975 14 N -0.419 5.419 15 C -0.172 4.172 16 S 0.191 5.809 17 C -0.161 4.161 18 C -0.197 4.197 19 C -0.084 4.084 20 C -0.199 4.199 21 C -0.059 4.059 22 N -0.228 5.228 23 H 0.089 0.911 24 H 0.211 0.789 25 H 0.247 0.753 26 H 0.229 0.771 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.186 0.814 31 H 0.190 0.810 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.054 -19.952 0.018 19.979 hybrid contribution 1.487 -0.659 -0.001 1.626 sum 2.541 -20.610 0.018 20.766 Atomic orbital electron populations 1.70210 1.09940 1.29379 1.33750 1.27133 0.95528 1.05308 0.90932 0.84826 0.79291 0.74484 0.78713 1.16630 1.19083 1.19096 1.20310 0.95460 0.90243 1.54334 0.89098 1.17134 0.87335 0.82277 0.77548 1.90650 1.15907 1.86872 1.56883 1.46511 1.06802 1.01700 1.79313 1.75408 1.25090 0.90859 1.25679 1.22508 0.84158 0.93245 0.97577 1.42194 1.02906 1.12240 1.84518 1.21902 0.93092 0.93377 1.08847 1.87531 1.02857 0.99621 1.90905 1.23607 0.94260 0.98037 1.00168 1.21852 0.93738 1.00193 1.03944 1.21911 1.02280 0.90906 0.93310 1.22483 0.94110 1.01491 1.01812 1.23350 0.95407 0.93809 0.93381 1.68091 1.39282 0.99566 1.15826 0.91110 0.78909 0.75344 0.77112 0.85351 0.85362 0.84719 0.81435 0.81032 0.79616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -50.57 11.71 21.86 0.26 -50.32 16 2 C 0.03 1.63 5.50 85.36 0.47 2.10 16 3 Si 1.01 41.02 29.56 68.60 2.03 43.05 16 4 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.57 -33.18 9.27 23.38 0.22 -32.96 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.55 34.70 7.66 84.87 0.65 35.35 16 10 O -0.62 -45.46 15.20 -5.31 -0.08 -45.54 16 11 N -0.60 -30.58 6.22 -180.40 -1.12 -31.70 16 12 N -0.35 -16.62 9.74 -49.30 -0.48 -17.10 16 13 C 0.31 10.60 7.97 137.50 1.10 11.70 16 14 N -0.86 -21.16 8.93 -49.47 -0.44 -21.60 16 15 C -0.02 -0.59 5.71 71.24 0.41 -0.18 16 16 S -0.05 -1.77 20.92 -56.49 -1.18 -2.95 16 17 C 0.09 2.48 7.00 84.83 0.59 3.07 16 18 C -0.17 -4.16 9.84 22.51 0.22 -3.94 16 19 C -0.06 -0.94 10.16 22.44 0.23 -0.71 16 20 C -0.18 -2.39 10.11 22.38 0.23 -2.16 16 21 C 0.10 1.71 11.17 84.62 0.95 2.66 16 22 N -0.51 -12.64 9.43 -192.21 -1.81 -14.46 16 23 H 0.28 15.63 8.29 -92.71 -0.77 14.86 16 24 H 0.37 15.80 6.55 -213.32 -1.40 14.41 16 25 H 0.42 6.65 8.86 -92.71 -0.82 5.83 16 26 H 0.40 9.99 6.68 -92.70 -0.62 9.37 16 27 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -91.05 304.16 0.58 -90.48 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -1.64 Total: 35.21 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 5.05 Total: 14.93 kcal Atomic # 7 Polarization: -131.58 SS G_CDS: -3.60 Total: -135.18 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.08 Total: -45.54 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -1.18 Total: -2.95 kcal Total: -91.05 0.58 -90.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004052266.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.489 kcal (2) G-P(sol) polarization free energy of solvation -91.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds